genome.fa.s13.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  109  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36547943--36548084	41	3.5	42	78	6	132	41	27	14	16	1.87
36549102--36549139	13	3.0	13	82	17	53	44	0	0	55	0.99
36549216--36549394	97	1.9	96	86	1	259	41	13	1	43	1.55
36549337--36549411	26	2.8	26	78	7	80	40	13	2	44	1.58
36554857--36554885	14	2.1	14	100	0	58	34	20	24	20	1.97
36559657--36559782	63	2.0	64	90	4	200	56	3	5	34	1.41
36563668--36563698	14	2.2	14	94	0	53	38	0	12	48	1.42
36564076--36564281	103	2.0	103	97	0	385	40	11	25	22	1.88
36576205--36576254	19	2.5	21	80	9	59	16	2	6	76	1.08
36576703--36576753	25	2.0	25	100	0	102	52	11	15	19	1.73
36578560--36578775	113	1.9	113	100	0	432	37	13	21	27	1.92
36597040--36597498	229	2.0	230	99	0	911	41	7	11	38	1.70
36627039--36627080	18	2.3	18	83	0	57	45	2	9	42	1.49
36626958--36627167	103	2.0	104	96	1	386	49	3	10	36	1.54
36627268--36627304	19	1.9	19	88	0	56	59	5	2	32	1.34
36628087--36628732	9	71.8	9	99	0	1283	33	33	10	22	1.89
36632033--36632066	16	2.1	16	100	0	68	50	11	0	38	1.39
36632033--36632076	16	2.6	16	89	7	52	47	11	0	40	1.39
36632714--36632766	20	2.7	20	84	0	61	41	3	37	16	1.67
36632939--36632978	16	2.5	16	91	0	62	27	5	32	35	1.79
36636969--36636998	13	2.3	13	94	0	51	36	3	13	46	1.60
36642586--36642619	17	2.0	17	88	11	52	58	0	5	35	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36645972--36646062	26	3.3	27	81	10	105	41	10	17	29	1.84
36646126--36646227	26	3.7	27	75	19	104	41	10	16	31	1.83
36645961--36646294	165	2.0	166	99	0	661	42	7	15	34	1.74
36653578--36654271	346	2.0	346	97	0	1327	36	8	16	38	1.78
36656966--36657213	124	2.0	124	92	0	415	45	9	16	28	1.79
36657348--36657383	18	1.9	18	88	5	54	58	2	0	38	1.13
36658131--36658159	2	14.5	2	100	0	58	48	0	0	51	1.00
36659483--36659511	2	14.5	2	100	0	58	48	0	0	51	1.00
36661630--36661702	37	2.0	37	91	0	119	46	15	4	34	1.64
36661630--36661719	37	2.4	37	85	7	103	47	14	4	33	1.64
36661836--36661913	38	2.0	39	92	2	131	20	2	25	51	1.60
36663217--36663276	23	2.5	24	79	15	63	60	0	0	40	0.97
36663203--36663257	20	2.7	22	73	23	57	60	0	0	40	0.97
36663255--36663797	288	1.9	288	91	2	894	32	16	18	32	1.93
36669598--36669879	141	2.0	140	88	8	423	44	13	3	38	1.60
36670194--36670250	13	4.4	13	78	8	62	40	1	1	56	1.20
36670198--36670250	26	2.1	25	89	3	79	39	1	1	56	1.21
36670936--36671117	17	10.3	17	75	8	141	43	12	13	30	1.81
36670933--36670994	20	3.2	20	75	9	74	37	8	12	41	1.73
36670957--36671139	35	5.2	34	78	8	147	46	13	11	28	1.77
36671373--36671432	30	1.9	33	87	12	92	50	3	0	46	1.18
36672167--36672226	23	2.5	24	79	15	63	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36672153--36672207	20	2.7	22	73	23	57	60	0	0	40	0.97
36681826--36682055	110	2.1	112	87	2	329	24	19	24	31	1.98
36685140--36685209	22	3.2	22	63	15	54	50	10	2	37	1.51
36685140--36685291	44	3.5	44	92	3	252	49	11	1	37	1.50
36685448--36685535	36	2.4	36	90	1	131	20	32	29	17	1.95
36685621--36685736	12	10.0	12	71	21	72	58	0	14	26	1.37
36685628--36685736	17	6.2	17	75	13	89	59	0	13	26	1.35
36685623--36685736	24	5.0	23	73	19	80	59	0	14	26	1.35
36685621--36685693	5	13.2	5	74	18	56	57	0	15	27	1.38
36685825--36685868	12	3.8	12	78	6	54	56	0	22	20	1.42
36685824--36685875	23	2.2	24	89	3	79	53	0	23	23	1.46
36690764--36690891	58	2.2	58	88	2	186	51	14	7	26	1.69
36690822--36691010	90	2.1	90	89	2	281	53	12	5	28	1.60
36690822--36691032	90	2.3	90	85	1	244	54	12	5	27	1.59
36693023--36693509	243	2.0	244	95	0	868	42	8	12	36	1.72
36696285--36696315	13	2.3	14	94	5	55	41	6	0	51	1.27
36698332--36698385	12	4.6	12	79	2	56	20	5	3	70	1.23
36698338--36698383	24	1.9	24	86	0	65	19	6	4	69	1.28
36707279--36707791	155	3.3	154	79	7	464	30	10	21	37	1.87
36714691--36714821	68	1.9	68	87	0	190	42	12	9	34	1.77
36717565--36717695	68	1.9	68	87	0	190	42	12	9	34	1.77
36732082--36732151	29	2.6	27	80	8	72	55	2	4	37	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36732192--36732346	76	2.0	77	98	1	303	43	5	5	46	1.48
36733082--36733200	42	2.8	42	93	0	202	32	22	23	21	1.98
36733175--36733411	42	5.7	42	77	14	251	21	21	20	36	1.95
36733173--36733405	81	2.8	81	84	7	290	21	21	20	35	1.96
36733171--36733406	123	1.9	124	86	6	336	21	22	21	35	1.96
36733726--36733797	21	3.5	20	79	9	81	4	44	19	31	1.70
36737021--36737081	14	4.4	14	75	8	70	34	18	13	34	1.89
36738320--36738379	15	3.9	15	80	4	57	41	36	3	18	1.67
36738318--36738379	8	8.3	7	72	13	52	43	35	3	17	1.66
36738792--36738866	14	5.3	14	74	3	69	46	41	0	12	1.41
36739178--36739885	115	6.2	114	77	5	644	27	23	18	30	1.98
36739326--36739882	229	2.4	225	82	4	638	28	23	17	30	1.97
36739708--36740088	205	1.9	204	82	6	493	27	21	18	32	1.97
36742160--36742215	23	2.4	23	76	5	69	37	14	16	32	1.88
36742364--36742435	19	3.5	19	70	20	56	54	5	0	40	1.24
36742364--36742402	18	2.1	19	85	4	53	58	2	0	38	1.12
36742391--36742436	23	2.0	24	91	4	76	50	6	0	43	1.28
36742415--36742471	29	2.0	29	86	6	82	59	5	0	35	1.20
36744319--36744413	41	2.3	40	94	3	172	61	14	1	23	1.40
36745672--36745708	19	2.0	19	89	5	58	29	2	2	64	1.21
36747257--36747680	211	2.0	212	99	0	841	43	8	7	40	1.62
36750574--36750854	95	3.0	95	83	2	339	29	21	16	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36750714--36751266	139	4.0	139	77	9	570	29	21	16	31	1.96
36750617--36751158	44	11.7	45	69	11	256	29	21	16	31	1.95
36750726--36751266	278	1.9	282	83	4	709	29	21	17	31	1.96
36751088--36751174	44	2.0	44	84	8	115	31	24	16	28	1.96
36750776--36751410	285	2.3	273	78	7	605	31	21	16	31	1.95
36751276--36751409	44	3.0	44	81	0	151	33	20	14	32	1.92
36763498--36763581	41	2.0	41	90	4	134	36	8	19	35	1.82
36765316--36765340	6	4.2	6	100	0	50	16	0	0	84	0.63
36765697--36765743	15	3.1	15	90	0	76	55	0	12	31	1.38
36771561--36771695	29	4.6	30	80	7	152	31	24	3	40	1.73
36771559--36771695	59	2.3	56	84	10	168	32	24	3	40	1.72
36772246--36772308	21	3.0	20	84	11	74	76	0	17	6	0.99
36772602--36772657	24	2.3	24	84	6	69	25	39	26	8	1.85
36775268--36775321	23	2.4	23	78	12	58	64	5	0	29	1.16
36776374--36776440	31	2.2	29	82	10	89	44	19	7	28	1.77
36776384--36776514	31	4.2	31	84	3	174	42	18	9	29	1.82
36776384--36776529	31	4.7	31	82	4	159	44	18	8	28	1.80
36776384--36776553	93	1.8	93	82	5	218	45	16	7	30	1.75
36785348--36785392	22	2.0	22	100	0	90	33	26	17	22	1.96
36786795--36786829	16	2.2	16	94	0	61	34	28	5	31	1.81
36790675--36790715	10	4.1	10	87	9	57	53	2	0	43	1.13
36790675--36790715	21	2.1	19	86	9	55	53	2	0	43	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36790629--36790709	36	2.2	37	78	8	85	56	3	0	39	1.17
36790676--36790717	9	4.4	9	86	13	50	54	2	0	42	1.13
36793107--36793140	17	1.9	18	88	5	52	50	8	20	20	1.75
36794466--36794494	6	4.8	6	100	0	58	65	17	0	17	1.27
36794532--36794564	9	3.7	9	91	0	57	27	9	18	45	1.79
36795298--36795335	20	1.9	20	88	0	58	21	2	15	60	1.47
36796400--36796570	85	2.0	86	98	1	335	44	7	5	42	1.55
36796574--36796622	15	3.3	14	83	11	53	24	16	6	53	1.66
36800079--36800247	42	4.0	42	100	0	338	40	11	9	37	1.74
36803374--36803415	14	2.9	14	82	3	57	50	0	19	30	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145