genome.fa.s13.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  119  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39430599--39430710	44	2.5	43	81	4	107	54	2	5	37	1.37
39431498--39431522	13	1.9	13	100	0	50	64	0	20	16	1.30
39432278--39432460	44	4.3	43	70	14	126	24	18	24	32	1.97
39432241--39432472	127	1.8	127	92	0	392	23	18	25	32	1.97
39432507--39432750	44	5.6	44	82	3	251	24	24	20	31	1.98
39432505--39432777	130	2.1	131	88	2	406	23	24	20	31	1.98
39432774--39435837	46	68.6	46	81	7	2699	28	22	20	28	1.99
39432907--39433143	44	5.4	44	72	12	184	27	22	20	29	1.98
39437394--39437444	7	7.6	7	86	8	79	13	13	0	72	1.12
39437394--39437444	13	3.8	14	84	10	79	13	13	0	72	1.12
39437394--39437444	20	2.5	20	93	0	84	13	13	0	72	1.12
39438374--39438470	23	4.2	22	75	15	74	9	9	6	75	1.19
39438330--39438429	50	2.0	52	82	7	125	9	12	6	73	1.25
39438407--39438470	30	2.1	30	85	5	85	10	7	6	75	1.20
39441807--39441878	2	36.5	2	74	13	60	48	2	4	44	1.36
39441807--39441891	44	1.9	44	83	4	109	50	2	4	42	1.36
39441982--39442023	9	4.5	10	82	11	54	61	7	2	28	1.35
39441990--39442035	22	2.1	22	84	8	58	60	4	6	28	1.40
39442723--39442747	13	1.9	13	100	0	50	64	0	20	16	1.30
39446284--39446327	22	2.0	22	90	0	70	9	0	43	47	1.35
39451206--39451230	13	1.9	13	100	0	50	72	4	0	24	1.02
39451916--39451973	28	2.0	29	93	6	100	17	5	32	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39451957--39451994	16	2.4	16	90	0	58	31	0	34	34	1.58
39466921--39466945	12	2.1	12	100	0	50	28	40	24	8	1.83
39476282--39476355	20	3.7	20	80	7	96	44	14	0	40	1.46
39476283--39476362	40	2.0	40	100	0	160	42	17	0	40	1.49
39476606--39476863	115	2.2	115	90	0	390	31	15	16	37	1.89
39479716--39479758	21	2.0	21	90	0	68	27	30	20	20	1.98
39488171--39488237	33	2.0	33	97	0	125	38	28	11	20	1.88
39499148--39499219	33	2.2	33	100	0	144	27	19	11	41	1.85
39511001--39511031	16	1.9	16	100	0	62	12	9	6	70	1.31
39511206--39511797	296	2.0	296	100	0	1184	32	14	20	32	1.93
39512974--39513073	37	2.7	39	78	17	106	42	3	3	52	1.32
39513128--39513168	14	2.7	14	88	11	55	41	2	4	51	1.36
39514498--39514548	25	2.1	25	88	3	77	7	3	23	64	1.37
39514693--39514742	12	4.2	12	81	0	55	46	18	12	24	1.82
39518310--39518372	31	2.0	31	84	6	83	47	3	1	47	1.27
39520294--39520398	54	2.0	54	83	9	137	41	0	29	28	1.56
39522850--39522880	16	2.0	15	93	6	53	0	25	58	16	1.38
39523114--39523394	91	3.1	91	100	0	562	43	8	6	41	1.61
39523687--39523717	9	3.4	9	95	0	53	12	35	16	35	1.87
39524489--39524532	17	2.5	18	82	13	56	65	4	0	29	1.12
39524487--39524536	18	2.8	17	82	14	64	66	4	0	30	1.10
39524592--39524658	28	2.2	31	84	10	86	79	1	2	16	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39526557--39526593	6	6.2	6	100	0	74	32	0	51	16	1.45
39527546--39527628	41	2.0	41	93	2	141	20	13	12	54	1.70
39529289--39529442	27	5.7	27	74	8	102	29	24	11	35	1.90
39529289--39529442	54	2.9	54	80	8	154	29	24	11	35	1.90
39529323--39529444	27	4.6	27	76	12	119	28	22	11	37	1.89
39530740--39530779	19	2.1	19	90	0	62	5	30	17	47	1.69
39530856--39530913	19	3.1	19	87	0	89	1	25	20	51	1.57
39530756--39530881	25	5.0	25	89	0	189	3	23	25	48	1.65
39533813--39533860	18	2.7	18	96	0	87	35	12	12	39	1.81
39534282--39534454	72	2.4	72	81	7	217	27	6	12	54	1.61
39535921--39535981	19	3.1	19	81	9	70	47	1	0	50	1.10
39536210--39536283	13	5.7	13	86	0	103	37	28	8	25	1.84
39540682--39540740	27	2.2	27	93	0	100	30	20	18	30	1.96
39544800--39544864	27	2.4	27	92	0	103	36	12	9	41	1.75
39546232--39546284	20	2.5	20	77	22	56	66	16	1	15	1.35
39562656--39562706	25	2.0	25	85	7	68	29	23	19	27	1.98
39565624--39565717	26	3.6	26	85	2	109	35	22	23	19	1.96
39565895--39566224	27	12.2	27	84	1	338	18	18	18	44	1.87
39567600--39567664	32	2.0	32	96	0	121	38	29	15	16	1.90
39572444--39572479	18	2.1	18	89	5	56	16	27	11	44	1.82
39573716--39573872	27	5.8	27	84	4	183	17	18	22	41	1.90
39573712--39573871	81	2.0	81	88	0	239	17	18	23	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39577759--39577852	25	3.8	25	84	0	125	20	22	19	38	1.94
39577759--39577865	25	4.3	25	81	0	115	21	22	18	37	1.94
39577759--39577865	50	2.1	50	84	0	133	21	22	18	37	1.94
39579591--39579632	23	1.9	21	90	9	66	52	21	16	9	1.72
39588283--39588622	166	2.1	166	98	0	664	28	19	12	40	1.88
39588732--39588831	25	4.0	25	73	17	82	31	7	2	60	1.35
39588743--39588834	49	1.9	47	86	4	130	30	7	1	60	1.31
39592871--39592916	25	1.9	25	86	8	69	26	8	0	65	1.21
39594911--39595125	88	2.4	88	88	0	331	26	26	26	21	1.99
39595140--39595392	44	5.8	44	88	0	337	31	18	21	28	1.97
39595150--39595454	132	2.3	131	80	5	321	30	17	22	28	1.97
39595847--39595967	44	2.8	44	82	3	138	31	16	21	30	1.95
39595973--39596090	44	2.7	45	77	7	134	30	18	23	27	1.98
39597978--39598011	15	2.3	15	90	10	52	26	0	0	73	0.83
39602893--39602935	21	2.0	21	90	0	68	46	11	2	39	1.53
39605691--39605799	53	2.1	53	100	0	218	36	14	14	33	1.87
39607608--39607632	4	6.2	4	100	0	50	52	0	0	48	1.00
39611383--39611426	16	2.8	16	96	0	79	45	2	25	27	1.65
39611416--39611508	44	2.1	44	87	4	132	31	3	29	36	1.73
39630686--39630735	18	2.6	19	84	12	59	40	4	0	56	1.18
39630862--39630898	19	1.9	19	94	0	65	27	5	0	67	1.12
39631366--39631448	40	2.0	41	86	6	116	37	0	7	55	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39637142--39637205	26	2.6	25	75	18	62	45	3	3	48	1.34
39637352--39637442	46	2.0	46	89	4	141	39	28	4	27	1.76
39637422--39637458	16	2.3	16	95	0	65	24	32	5	37	1.78
39639499--39639557	22	2.6	22	86	7	75	35	6	1	55	1.36
39642166--39642196	15	2.0	16	93	6	55	35	25	19	19	1.95
39643826--39643926	52	1.9	52	85	0	139	32	22	17	26	1.97
39648294--39648381	15	5.7	16	82	6	110	32	22	3	40	1.71
39648294--39648398	15	6.9	15	78	10	97	31	23	4	40	1.76
39648294--39648398	30	3.4	30	82	10	115	31	23	4	40	1.76
39651012--39651041	2	15.0	2	100	0	60	50	0	0	50	1.00
39654543--39654593	26	1.9	27	92	4	86	37	13	1	47	1.55
39656278--39656312	18	1.9	18	94	0	61	54	2	5	37	1.39
39656562--39656616	29	1.9	28	85	3	74	52	5	14	27	1.63
39656689--39656745	3	19.0	3	100	0	114	66	0	0	33	0.92
39657339--39657370	16	1.9	16	93	6	55	81	0	6	12	0.87
39657986--39658040	23	2.4	23	82	11	76	25	25	5	43	1.76
39658598--39658702	37	2.8	37	68	13	99	42	3	2	50	1.35
39658692--39658725	15	2.2	16	89	5	52	41	0	2	55	1.15
39661392--39661510	54	2.2	54	80	0	139	26	20	25	28	1.99
39664534--39664596	3	22.0	3	76	20	64	1	33	3	61	1.21
39665921--39665962	20	2.2	19	86	4	57	26	7	9	57	1.56
39670771--39670795	7	3.6	7	100	0	50	0	12	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39674457--39674493	20	1.9	18	89	10	56	51	0	0	48	1.00
39677007--39677069	31	2.0	31	81	6	74	47	7	11	33	1.68
39682419--39682452	2	17.0	2	100	0	68	50	0	0	50	1.00
39696245--39697302	528	2.0	529	99	0	2109	40	12	12	35	1.80
39706031--39706107	41	1.9	41	83	2	102	29	15	24	29	1.96
39706023--39706288	114	2.3	114	75	6	263	25	21	26	27	1.99
39707960--39708296	147	2.3	145	79	5	347	26	14	21	36	1.93
39708014--39708424	146	2.8	144	78	4	349	25	15	22	35	1.94
39714155--39714239	30	2.9	30	93	6	140	34	23	3	38	1.72
39714158--39714270	59	1.9	59	82	10	142	32	24	4	38	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145