genome.fa.s13.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  137  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45187719--45187753	17	2.1	17	88	0	52	37	28	11	22	1.89
45187744--45187791	20	2.4	20	85	0	60	43	29	6	20	1.76
45188938--45189011	29	2.5	29	86	4	94	50	14	14	20	1.78
45191874--45191903	13	2.3	13	100	0	60	50	16	0	33	1.46
45199576--45199717	41	3.5	41	81	5	155	18	19	30	32	1.95
45199576--45199681	38	2.7	38	88	4	149	19	16	32	31	1.95
45207793--45207848	29	1.9	29	88	0	85	21	21	8	48	1.77
45209228--45209288	27	2.3	27	94	0	104	19	4	13	62	1.48
45214045--45214094	14	3.6	14	74	15	50	34	8	4	54	1.49
45215413--45215462	14	3.6	14	74	15	50	34	8	4	54	1.49
45215836--45215874	20	1.9	21	89	5	62	17	0	2	79	0.84
45215837--45215884	8	5.8	8	80	4	51	16	0	4	79	0.89
45226508--45226727	109	2.0	109	100	0	440	36	13	20	30	1.90
45233661--45233721	19	3.0	19	80	15	68	36	8	14	40	1.76
45250604--45250671	34	2.0	34	91	0	109	26	22	5	45	1.75
45259012--45259045	14	2.3	15	90	5	52	50	0	14	35	1.44
45266185--45266220	6	6.0	6	100	0	72	0	16	0	83	0.65
45266186--45266229	6	6.7	7	94	5	51	2	13	0	84	0.73
45266237--45266294	8	7.0	8	81	14	55	10	1	8	79	1.01
45266192--45266294	48	2.1	49	82	7	120	7	6	6	78	1.09
45266233--45266293	16	3.7	16	80	8	77	9	1	9	78	1.03
45280927--45280965	19	2.1	19	85	9	53	66	7	7	17	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45288991--45289015	12	2.1	12	100	0	50	52	0	24	24	1.48
45291740--45291811	31	2.3	30	76	6	72	54	13	6	25	1.64
45298815--45298853	14	2.8	13	88	7	51	71	0	2	25	0.98
45301195--45301223	7	4.1	7	100	0	58	55	0	17	27	1.42
45302688--45302743	29	1.9	29	88	0	85	21	21	8	48	1.77
45305381--45305483	49	2.2	48	81	6	113	39	10	1	47	1.49
45307563--45307587	8	3.1	8	100	0	50	12	52	0	36	1.39
45311147--45311202	29	1.9	29	88	0	85	21	21	8	48	1.77
45313621--45313711	35	2.6	35	74	17	91	16	5	4	73	1.18
45314620--45314644	8	3.1	8	100	0	50	12	52	0	36	1.39
45315278--45315323	24	1.9	24	82	8	58	39	0	2	58	1.10
45316575--45316635	27	2.3	27	97	0	113	18	4	14	62	1.49
45327885--45327940	29	1.9	29	88	0	85	21	21	8	48	1.77
45336154--45336203	20	2.6	19	78	12	57	50	14	8	28	1.70
45336850--45336901	26	2.0	26	85	7	70	17	17	34	30	1.93
45336884--45336942	26	2.3	26	84	0	82	15	16	40	27	1.89
45340719--45340752	2	17.5	2	93	6	61	50	0	0	50	1.00
45343872--45343997	37	3.2	39	77	7	130	34	24	15	25	1.95
45343872--45343997	41	3.2	39	75	10	114	34	24	15	25	1.95
45344131--45344180	15	3.2	15	76	20	57	50	14	0	36	1.43
45348172--45348214	22	2.0	22	95	0	77	11	20	27	39	1.88
45348308--45348535	43	5.3	43	87	0	312	28	30	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45352957--45353060	52	2.0	52	96	0	190	31	2	13	51	1.55
45353013--45353476	133	3.5	133	79	6	602	30	9	14	45	1.77
45353223--45353324	52	2.0	52	96	0	186	30	3	14	50	1.61
45352920--45353471	263	2.1	263	96	1	1029	30	8	14	46	1.75
45353409--45353625	115	1.9	118	92	2	368	27	12	16	43	1.83
45354958--45355155	41	4.9	41	86	3	274	29	23	21	25	1.99
45358327--45358364	20	1.9	19	89	5	58	55	2	2	39	1.28
45358588--45358670	34	2.4	34	81	0	103	27	8	21	42	1.82
45359170--45359404	48	4.9	48	100	0	470	35	8	22	33	1.84
45359314--45359653	186	1.8	186	100	0	680	35	9	23	30	1.87
45363168--45363247	30	2.6	31	75	13	76	48	3	7	40	1.49
45374152--45374214	33	1.9	33	83	0	81	41	12	1	44	1.52
45374187--45374255	30	2.3	29	80	11	77	42	8	7	42	1.63
45377351--45377382	2	16.0	2	100	0	64	50	0	0	50	1.00
45380261--45380431	40	4.3	40	62	20	97	49	2	1	46	1.25
45380279--45380437	31	5.3	31	65	17	84	49	2	1	46	1.26
45380175--45380452	120	2.3	120	98	0	529	47	2	2	46	1.32
45384398--45384547	74	2.0	74	100	0	300	18	16	22	42	1.88
45386603--45386698	47	2.1	43	83	9	120	47	11	8	32	1.69
45386614--45386708	47	2.0	47	97	0	181	43	13	6	36	1.70
45386915--45386946	16	1.9	17	93	6	57	40	0	0	59	0.97
45386902--45387092	95	2.0	96	98	1	375	40	4	4	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45387010--45387041	16	1.9	17	93	6	57	40	0	0	59	0.97
45392302--45392345	23	1.9	23	86	9	63	50	15	9	25	1.74
45394456--45394539	35	2.3	36	87	6	116	59	1	8	30	1.34
45395475--45395727	129	2.0	129	91	0	416	34	20	12	32	1.90
45412553--45412591	4	9.8	4	100	0	78	25	0	23	51	1.49
45412794--45412819	3	8.7	3	100	0	52	0	65	0	34	0.93
45413687--45413719	4	8.2	4	100	0	66	51	0	0	48	1.00
45420089--45420118	2	15.0	2	100	0	60	50	0	0	50	1.00
45421341--45421375	2	17.5	2	100	0	70	51	0	0	48	1.00
45422458--45422490	17	1.9	17	93	0	57	33	3	12	51	1.54
45429900--45430048	60	2.5	60	88	0	217	35	16	14	33	1.89
45429923--45430051	29	4.3	29	72	13	100	35	15	14	34	1.88
45429899--45430051	31	5.1	31	72	9	127	34	15	15	34	1.89
45430269--45430300	7	4.6	7	96	0	55	34	0	0	65	0.93
45430261--45430303	14	2.9	15	86	6	61	34	0	2	62	1.08
45430256--45430449	96	2.0	97	98	1	381	41	4	8	45	1.54
45430358--45430396	7	5.6	7	90	0	60	33	0	0	66	0.92
45430279--45430476	96	2.1	94	88	5	290	42	5	10	41	1.60
45445661--45445778	58	2.0	58	98	0	227	45	18	4	31	1.69
45446412--45446511	41	2.5	40	82	6	116	31	25	18	26	1.97
45447384--45447439	17	2.8	21	70	30	50	30	7	0	62	1.22
45452575--45452630	29	1.9	29	89	7	87	41	19	16	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45455476--45455549	35	2.1	35	82	5	87	52	25	5	16	1.64
45468235--45468311	34	2.3	34	84	4	93	35	10	11	42	1.76
45469708--45469732	12	2.1	12	100	0	50	56	8	20	16	1.65
45471103--45471398	148	2.0	147	92	4	499	39	11	8	41	1.71
45487855--45487904	10	5.6	9	77	15	50	70	8	2	20	1.23
45487863--45487904	10	4.3	10	82	14	52	71	7	2	19	1.20
45487863--45487904	19	2.2	19	86	0	57	71	7	2	19	1.20
45491692--45491749	30	2.0	30	83	10	75	37	6	5	50	1.52
45503784--45503832	19	2.6	19	96	0	89	48	26	4	20	1.67
45504671--45504717	24	1.9	24	82	4	58	34	23	25	17	1.96
45504754--45504804	26	1.9	27	88	4	77	37	19	23	19	1.94
45504860--45504912	24	2.2	26	80	13	67	39	22	22	15	1.91
45504866--45504913	25	2.0	24	87	4	69	43	18	22	14	1.87
45505245--45505290	21	2.2	21	84	7	58	43	17	0	39	1.49
45506964--45507020	20	2.8	20	76	10	62	66	0	1	31	1.02
45506971--45507016	12	4.2	11	76	18	51	71	0	2	26	0.97
45506971--45507018	21	2.3	21	85	3	62	68	0	2	29	1.01
45507092--45507127	17	2.1	18	89	5	56	47	2	0	50	1.15
45509179--45509203	12	2.1	12	100	0	50	32	8	8	52	1.60
45510329--45510399	29	2.4	29	90	0	106	45	15	11	28	1.80
45527032--45527090	17	3.3	18	83	9	68	64	0	0	35	0.94
45536012--45536092	42	1.9	42	89	0	126	16	32	13	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45538233--45538270	19	2.1	19	90	5	60	39	0	2	57	1.12
45538639--45538678	16	2.3	18	87	8	57	65	0	0	35	0.93
45538639--45538673	17	2.0	18	88	5	54	65	0	0	34	0.93
45540255--45540594	147	2.3	147	89	0	511	35	21	15	27	1.94
45540519--45540804	121	2.3	122	89	5	423	35	22	12	29	1.91
45542083--45542111	12	2.4	12	100	0	58	44	0	0	55	0.99
45542909--45543094	62	3.0	62	99	0	365	22	28	16	32	1.95
45546273--45546531	81	3.2	81	79	4	272	23	15	27	33	1.95
45546273--45546512	82	3.0	82	81	1	250	23	14	27	33	1.94
45548702--45548962	41	6.6	41	83	11	332	26	18	29	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145