genome.fa.s13.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  12  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4922202--4922269	22	3.1	21	81	6	82	17	19	2	60	1.49
4922217--4922269	16	3.2	17	86	5	74	18	16	3	60	1.51
4922266--4922302	20	2.0	20	89	10	60	32	0	0	67	0.91
4922266--4922301	19	1.9	18	88	5	54	33	0	0	66	0.92
4922284--4922558	26	11.2	25	71	18	165	24	14	0	61	1.36
4922256--4922594	171	2.0	164	88	5	491	23	13	0	61	1.36
4922359--4922561	49	4.2	48	87	5	275	24	14	0	61	1.33
4922359--4922538	97	1.9	95	90	4	290	25	14	0	60	1.35
4922256--4922604	70	4.9	71	78	13	253	24	13	0	61	1.35
4922262--4922577	47	6.6	46	73	17	175	24	13	0	61	1.34
4926470--4926927	23	19.6	23	72	9	246	42	17	15	25	1.88
4926496--4926857	47	7.7	47	80	3	286	40	17	15	26	1.89
4926425--4926927	70	7.2	70	81	5	471	41	17	14	25	1.88
4926703--4926937	117	2.0	118	89	0	364	42	17	17	22	1.89
4926678--4926857	47	3.8	47	96	0	333	41	16	18	23	1.90
4926844--4926937	47	2.0	47	87	0	134	43	18	15	22	1.87
4927928--4928057	43	3.0	43	72	18	117	29	27	18	24	1.98
4927988--4929416	714	2.0	714	98	0	2779	35	21	9	33	1.86
4930021--4930209	91	2.1	91	83	4	238	28	6	21	43	1.76
4931182--4931350	43	4.0	43	75	9	157	21	15	28	33	1.95
4935647--4935697	26	2.0	26	84	0	66	58	5	11	23	1.55
4936161--4936207	14	3.4	14	81	0	58	27	0	38	34	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4940555--4940651	43	2.3	43	87	0	131	23	13	30	31	1.93
4953375--4953514	34	4.1	34	85	1	174	30	18	18	32	1.95
4953373--4953514	68	2.1	68	85	0	194	30	19	18	32	1.95
4958327--4958759	215	2.0	217	98	1	843	45	14	5	35	1.68
4960001--4960049	25	2.0	25	87	0	71	57	0	0	42	0.99
4966975--4967708	320	2.3	320	93	0	1225	33	19	15	31	1.93
4967600--4967817	109	2.0	109	94	0	382	33	14	15	36	1.88
4967280--4968137	429	2.0	429	93	0	1468	33	18	15	32	1.92
4967709--4969001	320	4.0	320	88	0	1924	33	18	16	31	1.93
4966983--4968457	749	2.0	749	89	0	2279	33	18	16	31	1.93
4967709--4969001	640	2.0	640	97	0	2433	33	18	16	31	1.93
4968861--4969085	95	2.4	94	81	3	254	35	16	20	27	1.94
4969138--4969274	34	4.1	35	81	4	131	41	13	13	30	1.84
4974010--4974047	20	1.9	20	88	0	58	42	2	5	50	1.39
4975766--4975826	14	4.4	14	74	0	59	18	18	6	57	1.61
4975781--4975838	28	2.1	28	86	0	80	24	18	5	51	1.66
4976754--4976788	16	2.2	16	100	0	70	28	11	28	31	1.92
4979331--4979462	44	3.0	43	78	4	122	29	21	18	29	1.97
4979345--4979465	44	2.8	44	84	0	152	32	22	19	26	1.97
4980492--4980526	4	8.8	4	87	0	52	71	2	2	22	1.13
4981742--4981790	25	2.0	25	83	0	62	14	10	30	44	1.78
4982008--4982989	44	21.7	44	71	10	453	27	20	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4982143--4982987	182	4.7	178	77	7	690	28	20	19	32	1.97
4982597--4982844	41	5.8	41	70	12	140	28	20	19	31	1.97
4982143--4982998	268	3.2	269	81	6	712	28	20	19	32	1.97
4982145--4982989	450	1.9	455	82	4	1089	28	20	19	32	1.97
4982864--4983045	44	4.0	43	76	10	132	29	20	17	32	1.95
4982143--4983033	89	9.8	89	75	11	427	28	20	18	32	1.97
4994083--4994121	4	9.8	4	88	0	60	71	2	2	23	1.10
4995619--4995875	133	2.0	130	81	8	306	28	21	16	33	1.95
4995903--4996005	45	2.3	45	86	0	143	30	25	10	33	1.90
4995729--4996189	226	2.0	227	86	2	658	30	21	14	32	1.94
4996033--4996335	137	2.2	138	89	2	459	31	21	16	31	1.95
4996033--4996421	137	2.8	136	84	4	336	30	21	16	31	1.95
5001393--5001443	20	2.7	18	79	11	57	52	11	17	17	1.73
5004518--5004614	37	2.5	40	77	11	103	31	6	12	49	1.65
5011104--5011137	12	2.9	12	86	4	52	38	0	2	58	1.13
5011720--5011755	10	3.6	10	88	0	54	66	2	0	30	1.06
5028112--5028180	34	2.0	34	100	0	138	23	14	2	59	1.49
5037746--5037818	30	2.5	28	80	10	76	31	5	6	56	1.49
5039381--5039413	2	16.5	2	93	0	57	51	3	0	45	1.16
5051386--5051414	2	15.0	2	92	7	51	51	0	0	48	1.00
5064112--5064161	24	2.0	27	81	18	63	38	2	0	60	1.09
5065252--5065439	3	62.7	3	100	0	376	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5065681--5065715	18	1.9	18	94	0	61	28	0	2	68	1.04
5080000--5080165	43	3.8	43	80	4	163	29	27	17	25	1.97
5080028--5080165	43	3.2	43	83	0	168	28	30	18	21	1.97
5080112--5080339	113	2.0	114	98	0	440	38	17	10	32	1.85
5087470--5087521	13	3.7	14	79	7	61	38	1	0	59	1.08
5087488--5087520	15	2.1	16	88	11	50	39	3	0	57	1.14
5087710--5087741	13	2.3	15	89	10	50	56	0	0	43	0.99
5087781--5087826	20	2.2	20	92	3	74	58	2	13	26	1.46
5087781--5087834	21	2.6	21	88	8	83	57	3	12	25	1.52
5088434--5088566	7	18.7	7	72	11	65	46	33	0	19	1.50
5088435--5088561	15	8.9	15	72	14	63	46	34	0	18	1.50
5088922--5089234	41	7.7	39	80	10	124	33	28	19	18	1.96
5088956--5089241	41	7.0	41	85	3	353	32	29	19	18	1.96
5089276--5089409	40	3.4	39	82	10	132	22	18	23	35	1.96
5089638--5090204	3	189.0	3	100	0	1134	33	0	0	66	0.92
5098810--5098976	82	2.0	83	98	1	327	46	20	4	28	1.71
5118144--5118258	57	2.0	58	89	1	178	26	18	8	46	1.77
5120922--5120973	24	2.2	24	92	0	86	34	7	9	48	1.65
5125336--5125387	24	2.2	24	85	0	68	34	5	9	50	1.59
5126426--5126483	7	8.3	7	76	17	50	39	1	0	58	1.08
5126426--5126494	21	3.3	20	75	13	59	39	1	0	59	1.06
5128358--5128387	15	2.0	15	93	0	51	56	6	3	33	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5129160--5129454	140	2.1	140	100	0	590	30	16	15	37	1.90
5130211--5130380	49	3.2	49	66	18	142	28	25	0	45	1.54
5130200--5130420	110	2.0	111	98	0	426	28	23	0	48	1.51
5130382--5130424	17	2.4	19	85	14	65	27	9	0	62	1.25
5130415--5130464	13	4.0	13	71	7	50	34	2	2	62	1.18
5135820--5135942	42	2.9	42	77	6	115	32	27	16	23	1.96
5135841--5135993	43	3.6	44	79	5	136	33	26	15	24	1.95
5138253--5138277	13	1.9	13	100	0	50	16	16	12	56	1.68
5141746--5141832	32	2.7	31	84	10	97	36	9	9	44	1.68
5143332--5143416	14	5.8	14	71	13	64	56	24	0	18	1.42
5143316--5143426	30	3.6	30	89	4	152	57	25	0	17	1.40
5143316--5143398	14	5.4	16	74	12	84	57	25	0	16	1.39
5144671--5144720	16	2.8	17	85	11	57	36	8	0	56	1.29
5144679--5144828	18	8.4	18	67	10	85	36	6	4	53	1.44
5144697--5144855	36	4.4	36	98	0	300	35	5	5	53	1.47
5144724--5144853	18	7.2	18	69	10	104	35	5	5	53	1.47
5144805--5144918	47	2.4	46	73	16	108	33	6	2	57	1.37
5144660--5144918	108	2.4	109	73	13	262	35	5	3	54	1.43
5150084--5150125	22	1.9	22	85	9	59	54	16	4	23	1.61
5153080--5153119	21	1.9	21	85	10	55	27	32	2	37	1.70
5156557--5156659	40	2.5	42	85	6	149	54	4	6	33	1.48
5156557--5156662	41	2.6	39	86	10	142	54	4	6	33	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5157301--5157325	13	1.9	13	100	0	50	48	4	0	48	1.20
5158347--5158389	11	4.0	10	85	14	59	20	30	0	48	1.50
5158350--5158406	11	5.2	11	80	14	55	22	31	0	45	1.53
5158448--5158481	14	2.5	14	90	4	52	32	0	0	67	0.91
5159425--5159477	14	3.8	14	83	14	65	26	0	15	58	1.37
5159425--5159477	21	2.5	21	85	11	81	26	0	15	58	1.37
5160423--5160462	21	1.9	21	90	10	64	30	42	22	5	1.75
5163774--5163815	13	3.0	14	82	6	50	73	11	11	2	1.18
5165431--5165719	125	2.3	125	90	1	463	26	20	20	32	1.97
5171517--5171541	10	2.5	10	100	0	50	64	12	0	24	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145