genome.fa.s13.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  49  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17214307--17214350	23	2.0	22	81	4	52	22	15	11	50	1.76
17217053--17217143	13	6.9	13	71	12	60	57	6	5	30	1.47
17218787--17219048	102	2.6	98	86	4	328	28	21	20	29	1.98
17218885--17219231	143	2.4	143	84	0	437	27	22	19	29	1.98
17218643--17219125	245	2.0	245	90	2	765	26	22	20	30	1.99
17223159--17223417	33	7.6	34	68	26	147	32	27	21	18	1.97
17223114--17223421	103	3.0	103	97	0	564	30	28	21	19	1.97
17227749--17227796	24	2.0	24	83	0	60	10	25	20	43	1.83
17227939--17227981	19	2.3	19	84	8	52	41	6	20	30	1.79
17231760--17231816	13	4.2	13	78	12	69	59	5	1	33	1.30
17233074--17233099	11	2.4	11	100	0	52	7	0	15	76	0.99
17234554--17234578	12	2.1	12	100	0	50	24	0	28	48	1.52
17236607--17236650	22	2.0	22	95	0	79	9	20	27	43	1.82
17236914--17237186	43	6.3	43	80	4	273	29	31	17	20	1.96
17236912--17237166	86	3.0	86	89	1	368	27	32	17	22	1.96
17236914--17237186	129	2.1	129	82	4	327	29	31	17	20	1.96
17236940--17237228	86	3.4	86	85	0	265	29	30	17	22	1.97
17236958--17237228	129	2.1	129	80	4	296	29	30	17	22	1.96
17237536--17237648	21	5.4	21	81	2	102	4	38	17	39	1.70
17237625--17237784	66	2.4	66	84	4	198	13	28	18	40	1.87
17254460--17254657	41	4.8	41	85	4	256	31	26	22	19	1.98
17254460--17254657	82	2.4	82	89	5	285	31	26	22	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17254712--17254830	40	3.0	40	81	2	152	20	20	22	36	1.95
17254834--17254859	12	2.2	12	100	0	52	46	30	15	7	1.74
17261929--17261967	17	2.6	14	84	15	51	56	2	2	38	1.27
17261951--17261987	19	1.9	19	94	0	65	62	0	0	37	0.96
17262052--17262126	33	2.2	35	81	11	84	60	4	1	34	1.24
17262112--17262173	24	2.6	24	85	10	74	72	8	4	14	1.24
17262112--17262149	13	3.1	13	85	11	53	73	10	0	15	1.09
17266468--17266511	23	2.0	23	81	4	54	36	9	2	52	1.46
17285110--17285134	12	2.1	12	100	0	50	20	16	40	24	1.91
17285794--17285866	26	2.8	26	81	4	94	43	9	15	31	1.78
17286331--17286496	43	3.9	43	84	0	206	37	22	10	28	1.88
17289621--17289648	14	2.0	14	100	0	56	50	28	14	7	1.69
17306415--17307055	44	14.8	44	73	14	365	28	20	23	27	1.99
17306723--17306967	133	1.9	127	80	10	289	28	21	23	26	1.99
17306419--17307170	216	3.5	215	92	1	1147	28	20	23	27	1.99
17307436--17307463	14	2.0	14	100	0	56	50	28	14	7	1.69
17308580--17308630	25	2.1	25	88	3	77	29	0	3	66	1.09
17308589--17308642	25	2.2	25	86	3	74	29	1	5	62	1.28
17309813--17309852	19	2.1	19	85	0	53	25	22	7	45	1.78
17311200--17311228	15	1.9	15	100	0	58	27	24	0	48	1.51
17316694--17316786	47	2.0	46	82	2	114	37	23	6	32	1.80
17331730--17331800	35	2.0	36	91	2	117	47	4	2	45	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17335121--17335170	17	2.9	17	75	16	50	0	30	10	60	1.30
17337868--17337925	25	2.4	25	91	2	91	46	8	13	31	1.74
17346227--17346265	18	2.2	18	86	9	53	25	20	12	41	1.88
17357295--17357389	31	3.0	31	81	14	97	42	6	5	46	1.51
17370924--17370955	16	1.9	17	93	6	57	37	21	0	40	1.54
17377106--17377166	12	5.2	12	72	9	54	70	1	4	22	1.15
17378597--17378624	7	4.0	7	100	0	56	42	14	42	0	1.45
17386491--17386526	18	2.0	18	100	0	72	22	16	16	44	1.86
17388685--17388723	2	19.5	2	89	0	60	46	48	2	2	1.29
17391898--17391924	8	3.4	8	100	0	54	44	14	0	40	1.46
17391898--17391931	16	2.1	16	88	0	50	44	17	0	38	1.49
17397417--17397633	105	2.1	101	85	5	283	31	16	24	27	1.96
17398828--17398876	20	2.4	21	76	10	57	36	2	0	61	1.08
17398848--17398910	18	3.4	17	75	16	63	28	0	3	68	1.05
17398847--17398910	20	3.3	19	79	16	62	28	0	3	68	1.04
17398859--17399027	38	4.2	39	73	16	137	31	5	1	61	1.28
17398949--17399083	20	6.4	20	68	25	75	32	5	1	60	1.28
17398885--17399083	87	2.3	87	98	0	380	31	6	1	60	1.30
17398894--17399014	28	4.2	29	65	15	81	30	6	0	61	1.27
17398922--17399043	28	4.2	28	65	17	79	33	7	0	58	1.32
17399036--17399085	10	5.0	10	76	16	50	34	2	2	62	1.18
17414671--17414715	3	15.0	3	95	0	81	64	0	2	33	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17419782--17419814	14	2.3	15	85	15	52	24	0	0	75	0.80
17419786--17419814	7	4.3	7	95	4	51	24	0	0	75	0.80
17422811--17422891	37	2.2	37	84	8	103	38	7	18	35	1.79
17422882--17422913	7	4.9	7	88	11	50	59	0	25	15	1.36
17430028--17430069	22	2.0	22	90	4	68	38	21	21	19	1.94
17435370--17435416	23	2.0	24	83	4	60	21	17	17	44	1.86
17457328--17457354	7	3.9	7	100	0	54	29	0	29	40	1.57
17458069--17458107	7	5.6	7	93	6	62	0	15	0	84	0.62
17458594--17458644	20	2.6	20	90	3	77	58	9	0	31	1.30
17459251--17459708	229	2.0	229	100	0	916	33	13	16	36	1.87
17463863--17463893	16	1.9	16	93	0	53	64	0	0	35	0.94
17471108--17471145	11	3.5	11	82	7	51	65	0	34	0	0.93
17473699--17473770	25	2.9	25	91	0	117	45	13	18	22	1.84
17479542--17479627	31	2.8	31	83	0	109	40	18	13	26	1.88
17483317--17483342	13	2.0	13	100	0	52	30	0	30	38	1.58
17485417--17485441	2	12.5	2	100	0	50	48	0	0	52	1.00
17487026--17487441	207	2.0	209	98	0	800	43	9	9	37	1.69
17488858--17489429	285	2.0	286	99	0	1137	32	10	7	49	1.65
17490852--17490904	20	2.5	20	87	6	70	33	13	15	37	1.86
17491391--17491441	18	2.8	18	74	14	50	23	29	1	45	1.64
17503672--17503726	3	18.3	3	100	0	110	65	0	0	34	0.93
17512112--17512222	25	4.4	25	77	1	96	34	21	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17516816--17516907	19	4.8	19	94	0	157	35	18	8	36	1.82
17517452--17517580	45	2.9	45	83	4	161	24	23	24	27	2.00
17517545--17517936	217	1.8	217	88	0	604	27	22	19	30	1.98
17517596--17517921	44	7.5	44	71	10	186	28	20	19	31	1.97
17518420--17518810	88	4.4	88	89	1	613	20	24	27	27	1.99
17520991--17521051	26	2.3	26	83	5	70	57	4	14	22	1.57
17525146--17525188	23	1.9	22	85	4	59	58	9	0	32	1.30
17525700--17525744	19	2.4	19	88	0	63	42	15	8	33	1.78
17525711--17525753	19	2.3	19	95	0	77	44	11	6	37	1.68
17525677--17525753	38	1.9	40	82	10	95	41	14	7	36	1.75
17526941--17526981	19	2.2	19	86	8	57	4	12	14	68	1.36
17529523--17529558	13	2.8	13	91	4	56	25	0	0	75	0.81
17531801--17531860	25	2.4	23	74	15	57	33	1	6	58	1.34
17539820--17539860	18	2.3	18	86	0	64	17	36	4	41	1.71
17542104--17542162	27	2.2	28	82	11	70	55	23	1	18	1.51
17543384--17543437	20	2.8	20	81	13	67	25	0	0	74	0.83
17550296--17550338	22	2.0	22	85	0	59	41	9	6	41	1.64
17555631--17555717	37	2.3	38	88	5	124	37	13	26	21	1.91
17558696--17559482	37	21.5	37	78	10	660	37	14	21	26	1.92
17558696--17559482	73	10.7	74	77	10	669	37	14	21	26	1.92
17558733--17559327	38	16.1	40	80	11	223	37	14	22	26	1.92
17558831--17559529	35	19.3	37	78	9	551	38	13	21	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17559720--17559870	75	2.0	75	84	0	194	40	20	13	25	1.89
17560821--17560846	10	2.6	10	100	0	52	73	0	0	26	0.84
17562978--17563002	7	3.6	7	100	0	50	88	0	0	12	0.53
17564061--17564120	21	2.7	22	82	12	70	55	0	3	41	1.16
17564054--17564120	23	3.2	19	76	19	62	55	0	2	41	1.15
17564067--17564121	22	2.5	22	82	11	69	54	0	3	41	1.18
17569000--17569721	64	11.3	64	99	0	1437	31	0	12	56	1.36
17569851--17569923	37	1.9	38	94	2	130	53	4	2	39	1.34
17572557--17572596	6	6.7	6	88	0	62	37	27	32	2	1.70
17577645--17577722	22	3.5	22	75	15	79	65	3	1	29	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145