genome.fa.s13.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  38  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13546504--13546532	13	2.1	14	93	6	51	34	0	6	58	1.25
13551956--13551993	14	2.6	15	83	4	51	63	7	10	18	1.50
13563255--13563296	21	2.0	21	86	4	59	35	2	4	57	1.33
13563254--13563298	20	2.2	20	80	7	56	33	2	4	60	1.29
13565472--13565546	22	3.4	22	83	0	96	14	13	14	57	1.66
13569978--13570009	13	2.5	13	94	0	55	37	3	0	59	1.13
13573324--13573398	1	75.0	1	97	0	141	0	1	0	98	0.10
13575423--13575502	37	2.2	37	97	2	153	43	10	16	30	1.80
13585005--13585215	114	1.8	112	85	6	280	28	21	24	25	1.99
13585375--13585426	7	7.3	7	79	12	52	21	0	36	42	1.53
13589156--13589310	43	3.6	43	88	3	224	21	15	29	32	1.94
13597857--13597895	20	2.0	20	85	10	53	58	5	2	33	1.33
13623955--13624011	28	2.0	28	86	0	78	40	19	8	31	1.82
13625082--13625113	12	2.8	11	90	9	55	78	0	21	0	0.76
13625082--13625127	23	2.0	24	86	4	67	73	0	23	2	0.94
13629727--13629770	21	2.0	21	83	12	54	63	0	0	36	0.95
13632786--13632817	2	16.0	2	100	0	64	50	0	50	0	1.00
13648684--13648723	20	2.0	20	90	0	62	30	27	0	42	1.56
13651493--13651822	27	12.2	27	82	8	359	42	16	20	20	1.89
13651501--13651822	54	5.9	53	86	4	405	42	16	20	19	1.89
13654343--13654418	4	19.5	4	94	5	138	51	0	0	48	1.00
13654545--13654577	17	1.9	18	88	11	52	45	0	12	42	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13654980--13655095	57	2.0	58	81	6	137	47	6	16	29	1.72
13677077--13677128	16	3.2	16	73	13	52	53	0	28	17	1.44
13680101--13680125	12	2.1	12	100	0	50	48	12	40	0	1.40
13686245--13686270	6	4.3	6	100	0	52	15	34	15	34	1.89
13688939--13689189	132	1.9	132	90	1	405	23	21	21	33	1.97
13691502--13691540	4	9.8	4	94	0	60	20	28	0	51	1.48
13694094--13694118	2	12.5	2	100	0	50	52	0	0	48	1.00
13702001--13702048	9	5.3	9	82	0	51	31	43	0	25	1.55
13702001--13702051	18	2.8	18	75	0	57	31	43	0	25	1.55
13713850--13713889	14	2.9	14	84	0	53	32	7	17	42	1.77
13713873--13713912	20	2.0	20	90	0	62	27	10	12	50	1.72
13713858--13713923	34	1.9	34	87	6	98	31	9	12	46	1.72
13713905--13713989	33	2.6	31	78	12	91	25	10	18	44	1.82
13715274--13715344	27	2.5	29	81	4	83	53	19	1	25	1.53
13717857--13717882	10	2.6	10	100	0	52	57	23	0	19	1.40
13718594--13718630	16	2.3	16	95	0	65	35	16	8	40	1.78
13721267--13721384	36	3.3	35	78	11	123	39	28	15	16	1.88
13723994--13724058	30	2.2	30	94	0	112	21	4	15	58	1.55
13724667--13724778	21	5.3	21	64	6	64	42	16	25	16	1.87
13724665--13724873	43	4.9	44	82	3	221	43	16	22	17	1.88
13732102--13732531	96	4.5	96	89	2	657	40	2	19	38	1.63
13732105--13732531	193	2.2	192	89	2	651	40	2	19	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13732568--13732978	126	3.3	126	89	2	648	35	17	20	27	1.95
13739063--13739224	61	2.7	62	70	22	157	49	6	2	41	1.41
13739330--13739388	21	2.8	21	87	5	75	11	20	38	28	1.88
13740297--13740343	7	6.7	7	100	0	94	57	14	0	27	1.38
13749866--13750016	21	7.2	21	73	0	122	15	23	17	43	1.87
13749892--13750043	42	3.6	42	81	1	153	15	21	17	45	1.85
13749949--13750046	21	4.7	21	70	5	72	14	21	18	45	1.84
13752006--13752093	41	2.1	41	100	0	176	30	15	18	35	1.92
13754193--13754234	14	3.1	14	77	16	52	61	0	4	33	1.17
13755492--13755564	38	1.9	38	100	0	146	32	2	8	56	1.43
13757056--13757105	17	2.9	17	100	0	100	24	28	6	42	1.78
13760589--13760641	17	3.1	17	86	0	79	24	20	5	49	1.71
13760869--13760924	29	2.0	28	86	10	78	64	7	3	25	1.35
13772539--13772572	9	3.8	9	100	0	68	55	11	11	20	1.67
13779875--13779926	23	2.5	20	84	9	59	51	7	0	40	1.30
13779881--13779929	21	2.2	23	82	13	59	57	8	0	34	1.29
13779919--13779968	20	2.5	20	87	6	66	60	2	2	36	1.20
13779839--13780105	132	2.0	133	99	0	527	48	8	3	39	1.50
13780007--13780058	23	2.5	20	84	9	59	51	7	0	40	1.30
13780013--13780061	21	2.2	23	82	13	59	57	8	0	34	1.29
13780051--13780100	20	2.5	20	87	6	66	60	2	2	36	1.20
13780047--13780115	20	3.5	18	78	11	57	59	2	2	34	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13785733--13785926	97	2.0	97	92	0	325	28	17	21	32	1.95
13786765--13786802	17	2.2	17	90	9	60	44	15	2	36	1.61
13797685--13797801	2	58.5	2	100	0	234	49	0	0	50	1.00
13821770--13821817	9	5.2	9	77	5	51	60	2	0	37	1.09
13824766--13824823	17	3.2	16	79	16	53	50	0	25	24	1.50
13825063--13825087	5	5.0	5	100	0	50	20	0	80	0	0.72
13825084--13825145	30	2.1	30	87	6	90	43	0	37	19	1.51
13838516--13838560	4	11.2	4	100	0	90	24	0	24	51	1.49
13838558--13838595	2	19.0	2	100	0	76	0	0	50	50	1.00
13841108--13841250	70	2.0	71	98	1	279	41	5	5	47	1.50
13844061--13844207	34	4.3	34	75	11	97	29	12	14	43	1.82
13844061--13844146	35	2.5	34	81	10	104	27	11	16	44	1.82
13844092--13844237	67	2.2	67	82	6	179	27	14	13	44	1.83
13844127--13844237	33	3.3	34	73	12	95	27	14	13	44	1.83
13848091--13848174	33	2.5	33	86	1	114	34	9	10	45	1.72
13850417--13850460	22	2.0	22	82	8	54	52	22	6	18	1.69
13852865--13852907	22	2.0	22	86	4	61	53	11	0	34	1.37
13857375--13857415	20	2.0	20	100	0	82	65	4	24	4	1.32
13858953--13858985	17	1.9	17	93	0	57	45	18	15	21	1.85
13860349--13860392	20	2.1	21	87	4	63	68	9	6	15	1.38
13861565--13861605	20	2.0	20	100	0	82	4	24	4	65	1.32
13862548--13862583	2	18.0	2	88	0	54	47	2	2	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13863527--13863567	20	2.0	20	100	0	82	65	4	24	4	1.32
13865105--13865137	17	1.9	17	93	0	57	45	18	15	21	1.85
13866501--13866544	20	2.1	21	87	4	63	68	9	6	15	1.38
13867705--13867769	30	2.1	32	91	8	109	43	3	15	38	1.62
13870211--13870354	69	2.1	69	93	0	243	37	8	25	29	1.85
13885741--13885996	85	3.0	86	84	1	336	30	19	16	32	1.95
13889019--13889051	16	2.1	16	94	0	57	72	12	0	15	1.12
13892305--13892333	4	7.2	4	100	0	58	27	24	0	48	1.51
13899209--13899241	17	2.0	16	94	5	57	42	6	21	30	1.77
13903779--13903811	17	1.9	18	88	11	52	48	0	12	39	1.40
13912043--13912112	35	2.0	35	88	0	104	35	24	10	30	1.88
13918170--13918198	15	1.9	15	100	0	58	65	6	0	27	1.18
13918575--13918632	22	2.6	22	84	7	73	43	17	3	36	1.66
13918604--13918656	19	3.0	17	78	10	61	35	18	9	35	1.84
13918588--13918645	19	2.8	20	84	10	64	39	17	6	36	1.76
13919354--13919393	20	2.0	20	90	0	62	50	12	10	27	1.72
13919342--13919408	34	1.9	35	90	3	109	46	13	8	31	1.74
13919549--13919626	37	2.1	37	92	0	129	21	8	6	62	1.47
13919825--13919871	22	2.1	23	84	11	62	61	0	0	38	0.96
13935293--13935459	40	4.2	40	78	7	169	35	17	29	16	1.93
13935323--13935387	20	3.3	19	68	12	51	32	16	36	13	1.89
13935313--13935463	80	1.9	80	86	5	216	36	17	29	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13941749--13941781	10	3.7	9	88	11	50	69	9	0	21	1.15
13951706--13951843	44	3.2	44	63	20	117	29	23	21	26	1.99
13951750--13951886	43	3.2	43	63	20	113	27	21	22	28	1.99
13951556--13952119	87	6.5	87	92	0	860	25	23	22	28	1.99
13953366--13953417	14	3.8	14	97	2	97	13	13	0	73	1.11
13953357--13953420	6	9.3	7	78	21	73	15	15	0	68	1.21
13954230--13954273	16	2.8	16	82	0	61	0	27	0	72	0.85
13954326--13954360	16	2.2	16	95	5	63	11	0	5	82	0.82
13958928--13959123	24	8.2	24	100	0	392	33	20	8	37	1.83
13960272--13960304	15	2.3	15	89	5	50	18	0	9	72	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145