genome.fa.s13.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  70  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23905052--23905213	31	5.4	31	82	11	228	26	12	9	51	1.69
23905075--23905239	29	5.6	29	82	11	219	26	12	9	52	1.69
23905052--23905239	60	3.2	60	99	0	369	26	12	9	51	1.70
23906591--23906722	72	1.9	72	88	3	205	22	21	7	48	1.75
23914341--23914413	33	2.2	34	82	7	87	56	0	10	32	1.34
23916258--23916817	44	12.6	44	67	14	182	28	20	19	31	1.97
23916498--23916812	87	3.6	86	75	10	289	27	20	20	30	1.98
23916444--23916818	44	8.6	44	73	6	201	28	20	19	31	1.97
23929545--23929635	45	2.0	45	84	0	119	59	6	14	19	1.57
23942084--23942159	39	1.9	39	81	5	91	60	3	0	35	1.15
23942120--23942184	27	2.5	26	77	7	69	60	3	0	36	1.13
23943615--23944021	18	22.7	17	69	16	191	44	11	11	32	1.76
23943621--23944021	35	11.2	35	71	13	255	45	11	11	31	1.76
23943589--23943930	71	4.9	70	74	12	230	45	11	11	32	1.76
23943893--23944019	57	2.3	55	84	9	159	46	9	14	29	1.76
23943863--23944014	17	8.1	20	72	17	82	44	9	13	32	1.76
23944117--23944163	17	2.8	17	84	9	69	46	10	14	27	1.78
23944956--23945022	9	7.4	9	77	14	59	2	13	1	82	0.86
23944985--23945024	9	4.2	10	87	12	66	0	20	0	80	0.72
23944969--23945028	20	3.1	19	79	11	59	1	18	0	80	0.80
23944964--23945018	8	6.5	8	82	12	56	3	12	0	83	0.77
23944977--23945024	18	2.7	18	87	9	71	0	18	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23945540--23945700	30	5.4	29	86	3	205	40	3	19	36	1.68
23945540--23945699	59	2.7	58	84	4	212	40	3	20	36	1.68
23949459--23949524	26	2.5	26	80	9	89	25	28	21	24	1.99
23949642--23949682	16	2.5	17	96	4	75	31	4	14	48	1.65
23949978--23950014	18	2.1	18	90	10	58	32	0	5	62	1.18
23950185--23950218	17	2.0	17	100	0	68	58	0	5	35	1.22
23951812--23951873	26	2.4	26	89	5	90	25	29	20	24	1.99
23953094--23953154	27	2.3	25	81	10	68	55	1	3	39	1.26
23953097--23953152	26	2.1	28	83	6	71	58	1	3	35	1.26
23955881--23956110	100	2.3	98	96	1	424	34	13	11	40	1.80
23958697--23958772	39	1.9	39	81	5	91	60	3	0	35	1.15
23958740--23958815	27	2.8	26	75	13	73	61	2	0	35	1.10
23964360--23964498	50	2.8	50	69	0	125	23	26	21	28	1.99
23964360--23964573	100	2.1	100	88	1	313	26	23	20	29	1.99
23964407--23964565	50	3.2	50	72	3	149	27	19	20	32	1.97
23964503--23964655	82	1.9	82	90	2	245	30	20	19	29	1.97
23964650--23964921	50	5.4	50	67	10	169	25	25	21	28	1.99
23964576--23964921	100	3.5	100	95	0	613	25	24	21	28	1.99
23973667--23974193	263	2.0	263	87	0	757	30	15	28	25	1.96
23980644--23980976	50	6.7	50	67	10	151	26	21	26	26	1.99
23980611--23980976	100	3.7	100	90	0	545	25	21	26	26	2.00
23988466--23988565	23	4.3	23	86	5	139	32	26	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23993043--23993102	26	2.3	26	85	0	84	30	31	15	23	1.95
23993056--23993108	26	2.0	26	96	0	97	28	28	18	24	1.98
23998271--23998320	14	3.6	14	83	0	55	50	10	2	38	1.48
24004509--24004542	17	2.0	17	100	0	68	52	0	5	41	1.25
24005365--24005407	22	2.0	22	81	9	52	20	9	9	60	1.55
24007016--24007064	3	17.0	3	87	8	75	36	0	0	63	0.95
24008954--24009354	46	9.6	45	80	15	433	31	20	14	33	1.93
24009043--24009354	74	3.9	83	87	11	392	31	19	14	33	1.92
24009136--24009322	38	5.0	38	80	14	246	32	17	16	34	1.92
24009136--24009340	74	2.8	74	99	0	401	31	19	15	34	1.92
24008954--24009354	120	3.2	125	79	16	403	31	20	14	33	1.93
24019141--24019183	22	2.0	22	85	0	59	65	0	0	34	0.93
24019160--24019208	25	1.9	26	83	4	64	59	2	0	38	1.09
24020625--24020699	31	2.3	32	86	6	107	42	4	8	45	1.52
24034377--24034445	30	2.2	32	79	7	79	55	4	7	33	1.47
24036052--24036097	13	3.5	13	80	14	58	15	15	15	54	1.72
24040328--24040368	20	2.0	21	85	4	57	36	0	2	60	1.10
24040327--24040368	22	2.0	21	85	4	57	38	0	2	59	1.10
24043452--24043491	19	2.2	18	95	4	71	42	15	2	40	1.60
24051863--24051896	17	1.9	18	88	5	52	38	0	2	58	1.13
24052244--24052279	3	12.0	3	100	0	72	33	0	0	66	0.92
24052650--24052726	41	1.9	39	82	10	93	18	9	35	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24063929--24063993	4	16.0	4	77	6	51	26	7	0	66	1.19
24064153--24064198	23	2.0	23	83	8	58	23	13	2	60	1.43
24064859--24064892	17	1.9	18	88	5	52	44	2	2	50	1.32
24066910--24066952	21	2.0	22	86	13	63	58	0	0	41	0.98
24066247--24067743	748	2.0	748	99	0	2985	38	11	12	38	1.79
24067658--24067700	21	2.0	22	86	13	63	58	0	0	41	0.98
24069175--24069215	6	6.8	6	89	10	66	65	17	0	17	1.27
24069175--24069210	13	2.8	13	95	4	65	66	16	0	16	1.25
24069175--24069224	25	2.0	25	88	7	75	64	16	2	18	1.39
24069177--24069215	19	2.1	19	95	4	71	69	15	0	15	1.20
24069247--24069295	9	5.4	9	92	0	80	24	10	26	38	1.87
24075020--24075073	14	3.7	15	78	11	67	18	38	0	42	1.50
24075007--24075089	30	2.8	30	96	1	150	22	38	0	38	1.55
24075011--24075089	16	5.2	16	74	11	85	24	39	0	36	1.55
24075009--24075090	15	5.3	16	68	22	68	23	40	0	36	1.55
24075311--24075542	113	2.0	114	98	0	448	43	10	7	37	1.68
24080962--24081015	27	2.0	28	92	3	92	22	24	27	25	2.00
24080994--24081201	33	5.7	33	69	19	110	21	18	26	33	1.96
24081027--24081162	42	3.5	41	71	17	126	21	15	27	35	1.94
24080990--24081200	75	2.8	73	86	5	296	21	18	27	32	1.96
24082965--24083002	19	2.0	19	89	0	58	34	5	26	34	1.79
24090088--24090170	25	3.3	25	91	0	130	15	22	22	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24090159--24090216	22	2.6	22	75	0	62	17	27	17	37	1.92
24091139--24091192	28	1.9	27	82	14	65	44	3	16	35	1.66
24101633--24101691	29	2.1	28	84	6	75	15	10	8	66	1.45
24107078--24107144	1	67.0	1	81	0	62	88	0	11	0	0.53
24107078--24107144	23	3.3	20	82	15	84	88	0	11	0	0.53
24120477--24120579	1	103.0	1	66	0	53	83	0	15	0	0.70
24120477--24120579	26	3.9	26	81	11	111	83	0	15	0	0.70
24120480--24120576	31	3.2	31	85	11	121	82	0	16	1	0.73
24120481--24120580	27	3.7	26	84	10	121	82	0	17	1	0.74
24120477--24120586	5	23.0	5	78	19	96	81	0	17	0	0.74
24121747--24122173	44	10.0	44	69	14	220	29	22	22	25	1.99
24121794--24122158	83	4.3	83	71	12	312	28	22	23	26	1.99
24121744--24122175	127	3.4	127	96	0	792	29	22	22	25	1.99
24124787--24124904	41	2.9	41	94	0	200	23	20	24	31	1.98
24125083--24125258	41	4.3	41	85	0	217	30	15	27	26	1.96
24128085--24128431	173	2.0	173	99	0	685	40	13	20	25	1.89
24135357--24135911	44	12.6	44	82	4	591	32	16	20	30	1.94
24135368--24135878	177	2.9	176	83	2	673	33	15	20	30	1.94
24138497--24138549	28	2.0	26	85	7	70	33	13	1	50	1.52
24142631--24142656	6	4.3	6	100	0	52	15	15	0	69	1.20
24144393--24144429	16	2.3	16	90	0	56	27	13	2	56	1.50
24148173--24148312	47	3.0	47	96	1	255	57	13	15	13	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24163076--24163125	18	2.7	18	84	6	55	46	2	2	50	1.24
24163633--24163765	61	2.2	60	84	1	167	37	6	15	40	1.72
24164977--24165005	14	2.1	14	100	0	58	75	0	0	24	0.80
24164972--24165053	42	1.9	42	87	7	121	63	0	1	35	1.02
24164976--24165065	41	2.2	41	80	9	103	64	0	1	34	1.01
24165716--24165764	19	2.5	20	80	6	64	24	4	0	71	1.03
24186751--24186804	28	2.0	27	85	10	74	29	20	1	48	1.60
24196956--24197102	77	1.9	77	81	2	179	24	28	12	34	1.92
24197122--24197146	8	3.1	8	100	0	50	24	0	28	48	1.52
24197287--24197357	34	2.1	34	100	0	142	52	9	14	23	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145