genome.fa.s13.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  118  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39106456--39106553	51	1.9	51	87	4	144	45	3	23	27	1.67
39106515--39106574	11	5.3	11	75	20	61	41	1	28	28	1.66
39106515--39106574	23	2.7	21	80	19	68	41	1	28	28	1.66
39106900--39106930	16	1.9	16	93	0	53	58	3	3	35	1.31
39113514--39113569	29	1.9	29	85	0	76	25	1	35	37	1.66
39117414--39117465	23	2.3	23	83	6	61	40	15	17	26	1.89
39117467--39117541	35	2.2	34	87	2	105	42	20	13	24	1.87
39117505--39117752	23	10.5	24	70	4	182	40	14	17	27	1.88
39117505--39117752	47	5.3	47	94	0	442	40	14	17	27	1.88
39118619--39118746	43	3.0	43	79	8	127	31	27	17	24	1.97
39119631--39119687	28	2.0	28	90	6	89	38	5	0	56	1.22
39119887--39119915	14	2.0	15	93	6	51	51	20	0	27	1.47
39120006--39120060	26	2.1	26	96	0	101	29	10	21	38	1.88
39121276--39121309	18	2.0	16	88	11	50	76	8	0	14	1.01
39121276--39121309	17	1.9	18	88	5	52	76	8	0	14	1.01
39121387--39121437	14	3.6	14	79	7	50	62	0	3	33	1.13
39122271--39122359	2	43.5	2	79	12	83	46	4	2	43	1.36
39124247--39124302	21	2.7	21	88	0	85	26	8	35	28	1.87
39126104--39126153	13	4.0	13	84	10	77	38	20	8	34	1.82
39126103--39126148	24	1.9	24	100	0	92	36	17	8	36	1.81
39129990--39130039	13	4.0	13	84	10	77	38	20	8	34	1.82
39129987--39130034	24	2.0	24	100	0	96	37	16	8	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39131371--39131443	32	2.2	34	85	4	96	45	5	1	47	1.34
39133326--39133354	7	4.1	7	100	0	58	41	31	0	27	1.56
39137847--39137882	13	2.7	13	86	4	54	83	8	8	0	0.82
39137907--39137945	19	2.1	19	90	9	62	28	41	28	2	1.69
39138016--39138087	1	72.0	1	71	0	54	86	0	13	0	0.58
39138017--39138088	8	9.0	8	82	11	94	84	0	15	0	0.62
39138017--39138076	15	3.9	15	89	4	93	85	0	15	0	0.61
39138014--39138086	31	2.3	32	83	9	96	84	0	15	0	0.61
39138016--39138087	15	5.1	14	75	11	76	86	0	13	0	0.58
39138632--39139126	71	7.0	69	71	17	263	30	13	11	43	1.80
39138709--39139124	89	4.6	88	78	11	400	31	13	10	43	1.79
39138620--39139143	18	29.3	17	71	12	297	31	14	11	43	1.80
39142135--39142170	11	3.2	11	88	4	54	16	33	0	50	1.46
39142364--39142419	26	2.2	26	80	6	60	35	1	3	58	1.26
39143836--39143871	10	3.6	10	100	0	72	27	0	11	61	1.30
39143863--39143910	25	1.9	25	100	0	96	45	0	14	39	1.45
39151815--39152034	74	3.0	74	98	0	422	29	18	20	31	1.96
39152347--39152379	16	2.1	16	100	0	66	45	18	6	30	1.73
39155470--39155523	16	3.6	14	80	14	63	24	0	1	74	0.92
39155450--39155523	26	2.8	25	78	13	69	22	2	1	72	1.04
39156534--39156576	4	10.5	4	85	14	61	72	0	4	23	1.04
39156536--39156576	21	2.0	21	90	9	66	70	0	4	24	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39156530--39156576	12	3.8	13	94	5	73	70	0	6	23	1.10
39159776--39160200	211	2.0	211	93	0	726	24	24	21	29	1.99
39160677--39160707	16	1.9	16	93	0	53	70	3	6	19	1.22
39161504--39161536	16	2.1	16	100	0	66	45	18	6	30	1.73
39176621--39176654	16	2.1	16	94	0	59	29	20	11	38	1.88
39180336--39180369	18	1.9	17	88	5	50	52	0	5	41	1.25
39184952--39184989	20	1.9	20	88	0	58	55	2	13	28	1.51
39185023--39185058	15	2.5	14	86	8	54	44	8	0	47	1.33
39190265--39190298	11	2.8	12	91	8	52	70	0	0	29	0.87
39190265--39190298	6	5.7	6	89	10	52	70	0	0	29	0.87
39200909--39200943	18	1.9	18	94	0	61	51	22	5	20	1.68
39203404--39204271	434	2.0	434	100	0	1736	39	20	16	23	1.92
39206606--39206702	28	3.5	28	74	4	97	49	16	14	19	1.79
39209177--39209226	23	2.1	24	82	10	59	28	2	2	68	1.12
39213270--39213304	18	1.9	18	88	0	52	54	2	0	42	1.15
39213434--39213467	18	1.9	18	94	5	61	55	0	2	41	1.15
39214574--39214626	26	2.0	26	82	7	63	60	1	1	35	1.19
39218136--39218181	23	2.0	24	83	8	60	28	2	2	67	1.14
39218315--39218376	23	2.6	23	82	10	63	27	3	1	67	1.15
39218123--39218514	195	2.0	196	99	0	777	37	9	6	46	1.61
39219681--39219826	76	1.9	76	88	2	222	28	19	22	28	1.98
39220085--39220144	25	2.4	26	78	13	63	68	1	5	25	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39220175--39220205	6	5.2	6	92	0	53	80	0	19	0	0.71
39223639--39223673	19	1.9	17	88	11	52	51	0	11	37	1.38
39226160--39226276	58	2.0	59	98	1	227	26	20	20	32	1.97
39233064--39233102	11	3.5	11	82	0	51	58	5	15	20	1.55
39236770--39236829	30	2.0	31	86	3	86	20	40	0	40	1.52
39249142--39249177	1	36.0	1	100	0	72	100	0	0	0	0.00
39249106--39249246	72	2.0	72	95	0	255	63	12	9	14	1.51
39250843--39250910	34	2.0	34	100	0	136	26	14	20	38	1.91
39261714--39261748	2	17.5	2	100	0	70	0	0	48	51	1.00
39265459--39265493	18	1.9	18	88	0	52	14	20	2	62	1.43
39288046--39288100	27	2.0	27	86	6	76	12	14	0	72	1.12
39288050--39288108	26	2.3	26	77	13	68	16	11	0	71	1.15
39293076--39293108	17	1.9	17	93	0	57	33	6	9	51	1.58
39293138--39293195	2	29.0	2	100	0	116	0	0	50	50	1.00
39294277--39294341	31	2.1	31	82	0	76	33	9	9	47	1.67
39299524--39299858	164	2.0	165	98	1	645	29	18	10	41	1.84
39304140--39304212	31	2.4	31	80	0	83	32	10	8	47	1.68
39304127--39304280	62	2.5	62	80	0	164	34	11	9	44	1.74
39307633--39307694	21	3.3	20	66	29	55	30	19	12	37	1.89
39309946--39310031	29	2.8	32	72	16	90	26	16	9	47	1.76
39319818--39320091	126	2.2	124	89	1	422	31	22	17	28	1.97
39320732--39320779	23	2.0	24	84	11	64	70	4	0	25	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39320766--39320817	20	2.7	18	78	21	61	63	5	0	30	1.18
39325666--39326030	175	2.1	172	79	5	405	39	20	7	32	1.81
39325904--39326205	156	1.9	159	81	6	373	41	20	8	30	1.82
39335665--39335730	30	2.3	28	79	7	78	46	3	21	28	1.66
39344734--39344810	13	5.9	13	92	0	127	25	6	28	38	1.81
39348006--39348066	30	2.0	30	87	6	88	44	14	36	4	1.67
39348593--39348663	33	2.2	33	82	5	81	7	11	9	71	1.30
39348647--39348697	22	2.3	21	83	9	66	17	7	3	70	1.27
39352948--39352977	2	15.0	2	100	0	60	50	0	0	50	1.00
39356100--39356142	23	1.9	23	90	4	70	27	6	13	51	1.67
39356107--39356155	23	2.1	23	85	7	64	28	10	14	46	1.77
39356730--39356969	94	2.6	94	80	4	252	29	12	20	38	1.88
39365328--39365364	9	4.1	9	92	0	65	45	13	10	29	1.77
39365566--39365606	19	2.1	20	82	13	50	26	31	0	41	1.56
39367816--39367867	18	2.9	18	80	2	52	78	9	7	3	1.06
39368041--39368078	7	5.4	7	100	0	76	31	13	39	15	1.86
39369189--39369232	23	1.9	23	86	9	63	43	0	2	54	1.12
39369222--39369279	6	10.0	6	87	7	84	53	0	0	46	1.00
39371251--39371338	43	2.0	43	89	4	133	14	56	4	23	1.57
39379460--39379495	6	6.0	6	96	0	63	19	0	63	16	1.30
39384191--39384234	20	2.2	20	83	4	52	70	9	0	20	1.14
39384430--39384456	2	13.5	2	100	0	54	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39391697--39391741	20	2.2	21	84	11	58	26	2	4	66	1.22
39404428--39404503	37	2.1	34	81	16	82	63	3	23	9	1.41
39410303--39410570	133	2.0	134	97	2	513	48	4	5	41	1.48
39411586--39411767	94	1.9	95	94	1	321	23	3	13	60	1.47
39412962--39413143	94	1.9	95	94	1	321	23	3	13	60	1.47
39415056--39415085	15	2.0	15	93	0	51	50	0	10	40	1.36
39415210--39415258	25	1.9	26	84	12	66	40	6	10	42	1.63
39422106--39422146	21	2.0	20	85	4	55	46	4	19	29	1.71
39426370--39426424	20	2.7	22	75	16	64	40	7	3	49	1.48
39428960--39428987	12	2.3	12	100	0	56	50	14	14	21	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145