genome.fa.s13.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr11
Parameters: 2 7 7 80 10 50 1000
Length:  47972186

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  48  of  145  ( 17310 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16883963--16883997	18	1.9	18	88	0	52	25	14	11	48	1.77
16886423--16886471	13	3.7	13	80	2	53	32	8	14	44	1.74
16888452--16888526	26	2.9	25	90	5	114	44	21	18	16	1.87
16895728--16895892	23	7.2	23	81	9	185	31	25	18	24	1.97
16895728--16895895	46	3.7	46	89	0	246	32	25	17	25	1.97
16895728--16895895	69	2.4	69	82	11	218	32	25	17	25	1.97
16896121--16896159	18	2.2	17	86	13	53	46	20	0	33	1.51
16900140--16900185	24	1.9	24	95	0	83	63	6	4	26	1.38
16900374--16900400	8	3.4	8	100	0	54	51	0	0	48	1.00
16904985--16905044	3	20.3	3	96	3	113	66	0	0	33	0.92
16907107--16907154	19	2.6	19	86	3	71	35	2	14	47	1.56
16910960--16911018	19	3.2	19	97	2	111	38	3	15	42	1.63
16911483--16911560	39	2.0	39	92	0	129	33	19	17	29	1.95
16918488--16918555	31	2.2	32	89	2	102	26	19	5	48	1.71
16919179--16919207	12	2.5	12	94	5	51	68	0	6	24	1.13
16923747--16923801	21	2.6	21	80	5	58	21	27	36	14	1.93
16927271--16927509	119	2.0	120	99	0	471	41	16	5	37	1.71
16927676--16927708	16	2.1	16	94	0	57	36	9	12	42	1.74
16933865--16934037	43	4.0	43	100	0	346	37	6	34	20	1.80
16935920--16936123	43	4.7	43	80	6	216	23	16	27	31	1.96
16939167--16939195	12	2.3	13	94	5	51	13	13	3	68	1.33
16959063--16959088	7	3.7	7	100	0	52	15	0	15	69	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16959908--16959936	12	2.3	13	94	5	51	24	10	34	31	1.89
16965571--16965628	17	3.2	17	77	17	62	51	1	0	46	1.11
16965566--16965628	20	3.2	20	74	17	69	52	1	0	46	1.10
16983056--16983099	23	1.9	22	82	17	54	36	25	0	38	1.56
16983144--16983231	45	2.0	45	88	0	131	35	22	17	25	1.95
16983234--16983429	51	3.9	51	80	3	225	29	29	18	22	1.97
16983241--16983425	101	1.8	101	90	3	300	30	28	18	22	1.97
16987732--16987817	35	2.5	35	82	0	100	25	26	17	30	1.97
17000512--17000551	18	2.2	19	86	4	55	17	15	2	65	1.39
17007804--17007856	27	2.0	27	92	0	88	30	3	28	37	1.75
17012802--17012831	14	2.1	14	100	0	60	0	26	23	50	1.50
17012901--17012955	25	2.3	24	87	12	78	0	23	21	54	1.45
17014872--17014937	18	3.7	18	95	0	114	34	15	12	37	1.84
17017216--17017265	17	2.8	18	72	22	52	54	6	4	36	1.44
17017576--17017637	13	4.7	13	83	2	61	37	25	8	29	1.85
17021257--17021325	35	2.0	35	94	0	120	14	31	30	23	1.94
17022123--17022147	2	12.5	2	100	0	50	52	0	0	48	1.00
17029515--17029555	22	1.9	21	85	14	57	21	0	7	70	1.11
17032775--17032815	22	1.9	21	85	14	57	21	0	7	70	1.11
17038051--17038202	72	2.1	72	98	0	295	32	17	13	36	1.89
17038207--17038301	30	3.2	29	79	18	106	27	15	23	33	1.95
17038225--17038301	29	2.6	30	91	2	120	24	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17040415--17040439	12	2.1	12	100	0	50	68	0	0	32	0.90
17044937--17044986	20	2.5	20	83	0	73	18	40	20	22	1.92
17046559--17046599	15	2.6	16	88	7	66	53	4	4	36	1.44
17046812--17046967	57	2.9	54	83	3	197	23	16	13	46	1.82
17049812--17049854	21	2.0	23	81	9	54	34	11	9	44	1.73
17057410--17057671	66	4.0	66	88	0	380	40	20	11	27	1.86
17059474--17059499	13	2.0	13	100	0	52	23	0	0	76	0.78
17062101--17062248	66	2.2	66	91	0	233	19	10	27	41	1.85
17064096--17064948	431	2.0	432	93	1	1451	31	16	22	29	1.95
17071863--17071910	23	2.1	23	100	0	96	43	8	8	39	1.65
17079474--17079793	107	3.0	106	86	5	444	35	18	16	28	1.93
17082139--17082687	50	11.0	49	71	5	355	24	21	22	31	1.98
17082118--17083410	100	12.9	99	72	10	826	25	21	21	32	1.98
17082957--17083411	50	9.1	50	70	5	276	24	21	21	32	1.98
17082226--17083637	704	2.0	705	98	0	2702	25	21	20	32	1.98
17083415--17083775	132	2.7	131	82	2	454	28	22	16	32	1.96
17083792--17084162	50	7.4	50	71	3	228	25	21	21	32	1.98
17083764--17084254	100	4.9	100	83	5	602	25	20	20	33	1.97
17082723--17084484	843	2.1	836	93	1	3035	26	21	19	32	1.97
17084877--17085451	89	6.5	89	86	1	731	23	23	22	29	1.99
17084877--17085451	267	2.2	267	88	1	830	23	23	22	29	1.99
17086692--17086750	14	3.9	14	79	14	55	0	20	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17086691--17086745	18	3.1	18	80	15	69	0	20	0	80	0.72
17086691--17086752	22	2.8	21	85	11	79	0	19	0	80	0.71
17086688--17086754	28	2.4	28	85	9	84	0	19	0	80	0.71
17086698--17086751	8	6.9	8	74	18	51	0	20	0	79	0.73
17088815--17089135	108	3.0	107	87	3	464	35	19	16	28	1.93
17097553--17097642	33	2.7	33	76	8	94	30	14	27	27	1.95
17097417--17097643	101	2.2	101	84	0	310	29	15	26	28	1.96
17100905--17101041	42	3.3	41	80	7	143	37	18	14	29	1.90
17101380--17101442	32	2.0	32	81	6	74	49	6	4	39	1.49
17102494--17102521	13	2.2	13	100	0	56	28	0	32	39	1.57
17116470--17116499	15	2.0	15	93	0	51	0	16	20	63	1.31
17123135--17123194	29	2.0	30	81	9	70	68	0	1	30	0.99
17125312--17125391	23	3.5	23	76	6	81	40	18	17	23	1.91
17127888--17128185	152	2.0	152	87	1	436	27	12	23	36	1.91
17130110--17130149	15	2.7	14	84	7	53	57	5	0	37	1.21
17130311--17130360	17	3.2	16	78	13	59	48	8	0	44	1.32
17130518--17130562	17	2.7	17	86	3	56	42	26	2	28	1.67
17131724--17131757	17	2.0	17	100	0	68	52	11	11	23	1.70
17142105--17142194	41	2.2	41	87	2	126	47	17	2	32	1.60
17153941--17154003	9	7.4	8	83	16	58	66	1	3	28	1.16
17153943--17153993	26	2.0	26	85	14	70	66	1	3	27	1.20
17153975--17154003	3	10.0	3	92	7	51	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17154812--17154993	97	1.9	97	90	5	296	41	18	9	31	1.82
17154967--17154995	11	2.5	12	88	11	51	58	0	6	34	1.25
17155712--17155758	23	2.0	25	83	8	62	10	2	12	74	1.16
17156007--17156507	217	2.3	217	86	2	675	26	22	20	30	1.98
17156171--17156556	44	8.8	44	76	8	270	26	23	19	30	1.98
17156171--17156556	89	4.4	89	76	7	290	26	23	19	30	1.98
17165020--17165179	82	2.0	82	98	0	311	37	25	12	25	1.91
17165185--17165362	91	2.0	91	100	0	356	26	30	12	30	1.93
17168814--17168885	9	8.4	8	80	17	58	66	1	2	29	1.14
17168848--17168885	3	13.0	3	88	5	60	65	0	2	31	1.06
17169924--17169969	24	2.0	23	86	4	65	10	2	13	73	1.17
17177597--17177664	34	2.0	34	94	0	118	45	19	14	20	1.85
17184800--17184842	21	2.1	20	86	4	59	30	16	0	53	1.43
17185204--17185238	18	1.9	18	94	0	61	8	8	0	82	0.83
17192362--17192437	21	3.5	22	83	3	93	2	34	15	47	1.60
17194493--17194531	6	6.2	6	88	11	60	38	0	46	15	1.46
17194492--17194662	13	12.6	13	65	23	77	35	2	49	12	1.55
17194512--17194678	43	3.8	43	95	1	280	34	4	50	11	1.58
17194732--17194869	30	4.7	29	94	2	231	52	0	9	38	1.34
17199334--17199384	21	2.4	21	93	0	84	31	37	7	23	1.83
17203457--17203714	10	24.4	10	67	23	83	57	4	4	32	1.40
17203467--17203519	21	2.7	19	85	5	70	60	0	1	37	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17203468--17203520	19	2.7	19	75	16	54	60	0	1	37	1.08
17203456--17203789	97	3.4	97	97	1	627	56	5	5	32	1.44
17203541--17203617	21	3.6	22	80	15	74	62	1	2	33	1.17
17203565--17203617	19	2.7	19	75	16	54	60	0	1	37	1.08
17203638--17203714	21	3.6	22	80	15	74	62	1	2	33	1.17
17203662--17203714	19	2.7	19	75	16	54	60	0	1	37	1.08
17204809--17204841	16	2.1	16	94	0	57	9	0	30	60	1.27
17210576--17210651	37	2.1	37	82	9	93	43	1	3	51	1.28
17211210--17211269	29	2.1	29	100	0	120	26	13	23	36	1.92
17212542--17212566	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145