genome.fa.s3.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  104  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33526224--33526761	271	2.0	272	91	0	880	32	18	13	35	1.89
33528566--33528598	16	2.1	16	88	11	50	24	18	12	45	1.83
33529488--33529547	23	2.7	21	82	7	66	78	0	18	3	0.89
33529493--33529545	16	3.2	17	81	5	65	79	0	18	1	0.83
33529493--33529546	11	4.9	11	78	14	58	79	0	18	1	0.82
33531301--33531813	99	5.2	99	76	7	436	38	18	17	25	1.93
33531340--33531838	195	2.5	197	84	2	630	37	17	18	25	1.93
33531858--33532349	50	9.8	50	79	0	228	34	17	23	23	1.96
33531924--33532324	150	2.7	148	80	3	435	35	16	24	22	1.95
33531844--33532347	100	5.0	100	81	0	515	35	17	24	23	1.95
33566462--33566510	20	2.5	19	80	6	62	40	8	4	46	1.52
33566546--33566597	24	2.1	25	83	16	65	34	1	0	63	1.06
33567081--33567132	28	1.9	27	84	7	70	36	1	1	59	1.19
33569642--33569681	21	1.9	21	84	0	53	20	5	22	52	1.65
33571392--33571443	20	2.5	19	75	25	52	34	3	5	55	1.42
33583494--33583541	20	2.5	20	83	12	57	43	6	0	50	1.27
33586855--33586951	28	3.3	29	72	4	88	37	5	20	37	1.75
33587129--33587214	17	5.1	17	79	0	100	37	2	5	54	1.37
33588477--33588517	22	1.9	22	85	5	57	39	12	26	21	1.89
33589296--33589335	9	4.3	9	87	6	53	90	5	5	0	0.57
33589280--33589344	13	4.8	13	79	12	60	84	3	10	1	0.80
33590273--33590446	49	3.5	50	68	8	122	34	17	29	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33590654--33590763	39	2.8	38	77	16	109	24	28	22	24	2.00
33590950--33591316	171	2.1	171	92	1	601	37	17	22	22	1.94
33590783--33591523	379	2.0	378	89	1	1155	36	17	22	23	1.95
33591121--33591627	208	2.4	208	89	1	766	36	18	22	22	1.95
33593943--33594081	30	4.7	29	79	5	120	36	23	4	35	1.74
33593944--33594104	29	5.4	29	75	7	119	37	22	3	36	1.72
33594187--33594278	29	3.2	29	75	7	89	30	28	8	32	1.87
33594117--33594282	59	2.8	57	72	13	149	31	26	9	32	1.88
33599092--33599153	30	2.0	31	93	3	108	38	0	11	50	1.39
33600581--33600611	14	2.2	14	94	0	53	35	0	0	64	0.94
33602267--33602309	21	2.0	21	86	8	61	46	6	6	39	1.58
33603918--33603964	21	2.2	21	88	7	69	51	34	0	14	1.43
33607307--33607337	12	2.5	13	94	5	55	25	6	6	61	1.45
33608054--33608080	7	3.9	7	100	0	54	44	0	0	55	0.99
33608163--33608272	57	1.9	57	83	3	139	25	10	10	54	1.64
33608163--33608322	54	2.8	59	77	10	138	26	11	9	51	1.69
33608185--33608322	54	2.5	55	77	8	147	26	12	7	52	1.66
33615351--33615402	18	2.8	18	73	2	50	26	3	3	65	1.27
33615364--33615392	6	4.8	6	100	0	58	17	0	0	82	0.66
33619498--33619556	31	1.9	31	89	6	93	33	13	11	40	1.81
33624597--33626311	861	2.0	858	92	1	2859	35	15	20	29	1.93
33629007--33629066	26	2.3	27	80	8	70	36	15	11	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33651645--33651699	21	2.7	20	80	8	65	34	10	23	30	1.89
33657846--33658051	41	5.0	41	83	2	234	29	19	20	30	1.97
33659077--33659135	17	3.3	18	83	11	77	1	11	5	81	0.93
33659086--33659125	14	2.9	13	85	10	53	2	10	2	85	0.80
33659082--33659133	14	3.8	13	78	16	52	1	13	1	82	0.84
33663792--33663839	16	2.9	15	82	14	51	43	2	6	47	1.40
33663794--33663872	17	4.9	16	78	10	81	43	3	3	49	1.38
33663791--33663899	6	18.3	6	72	16	84	47	3	2	45	1.34
33663808--33663882	31	2.5	29	87	8	114	44	4	1	50	1.29
33663788--33663885	11	9.0	11	71	10	76	44	3	3	48	1.33
33663788--33663887	17	6.1	17	73	10	73	45	3	3	49	1.33
33663827--33663899	31	2.4	30	84	9	85	49	4	0	46	1.21
33665781--33665835	27	2.0	28	82	7	67	41	20	1	36	1.63
33665838--33666004	59	2.8	58	84	4	210	29	29	6	34	1.83
33665847--33665997	30	5.1	29	67	22	75	30	27	5	36	1.81
33677944--33678362	68	6.0	68	87	5	490	33	17	19	29	1.95
33678058--33678169	31	3.4	31	69	15	91	35	18	21	24	1.95
33678089--33678357	37	7.4	37	69	19	179	33	15	19	31	1.93
33678188--33678396	38	5.6	37	73	15	169	33	14	18	33	1.91
33678013--33678445	68	5.9	75	87	6	500	33	16	19	29	1.94
33678763--33678792	10	2.8	11	95	5	53	40	0	10	50	1.36
33678755--33678807	27	2.0	27	85	7	72	41	1	7	49	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33678782--33678858	31	2.6	29	86	8	109	44	5	1	49	1.33
33678785--33678873	17	5.6	16	72	17	62	47	5	1	46	1.33
33678782--33678873	31	3.0	28	80	14	103	46	5	1	46	1.32
33678833--33678880	12	3.8	12	86	2	51	54	4	0	41	1.20
33678782--33678873	6	15.2	6	74	15	82	46	5	1	46	1.32
33680733--33680789	29	2.0	29	85	0	78	42	19	1	36	1.62
33680772--33680897	59	2.2	59	82	4	148	30	30	4	33	1.78
33680785--33680892	30	3.8	28	73	19	89	31	28	4	35	1.78
33688144--33688209	30	2.2	30	89	5	98	50	9	0	40	1.34
33693415--33693452	3	13.3	3	83	10	53	34	0	2	63	1.09
33693415--33693452	17	2.2	17	90	0	58	34	0	2	63	1.09
33698623--33698726	29	3.6	29	94	0	172	32	21	4	41	1.74
33703150--33703192	21	2.0	22	86	4	61	32	18	4	44	1.71
33704970--33705001	2	16.0	2	100	0	64	50	0	0	50	1.00
33706672--33706859	39	4.8	39	74	7	175	36	17	18	27	1.93
33711403--33711427	13	1.9	13	100	0	50	76	0	0	24	0.80
33712474--33712507	18	2.0	17	88	11	52	38	0	0	61	0.96
33713738--33714386	159	4.1	159	99	0	1289	36	4	9	48	1.58
33714723--33714969	88	2.8	86	81	6	280	42	14	7	35	1.74
33715124--33715167	21	2.1	21	80	15	56	65	0	4	29	1.12
33715125--33715167	20	2.2	20	87	8	61	65	0	4	30	1.13
33715366--33715439	19	3.9	19	73	19	73	31	4	2	62	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33715424--33715458	17	2.1	17	88	0	52	37	0	0	62	0.95
33715452--33715560	19	5.7	19	70	15	73	30	2	3	63	1.26
33715667--33715898	91	2.6	89	78	4	241	35	7	19	36	1.81
33722484--33722518	13	2.8	12	87	8	52	20	2	2	74	1.08
33754252--33754350	43	2.3	42	81	5	110	32	4	8	55	1.48
33759435--33759460	5	5.2	5	100	0	52	38	19	19	23	1.93
33763689--33763948	133	2.0	133	95	0	466	42	15	9	32	1.79
33771425--33771506	15	5.5	15	70	2	67	41	40	3	14	1.64
33771426--33771520	44	2.2	44	98	0	181	41	41	4	13	1.64
33772027--33772094	34	2.0	35	85	2	93	27	13	30	27	1.94
33772038--33772113	35	2.2	34	80	2	89	32	13	27	26	1.93
33773267--33773300	15	2.3	15	94	0	59	41	0	0	58	0.98
33775166--33775216	24	2.1	24	92	0	84	56	7	11	23	1.61
33776138--33776163	9	2.9	9	100	0	52	23	11	23	42	1.86
33777785--33777835	24	2.1	24	92	0	84	54	5	13	25	1.61
33782252--33782702	147	3.1	147	92	0	744	27	11	28	32	1.91
33783829--33783855	13	2.1	13	100	0	54	85	0	0	14	0.61
33794279--33794306	6	4.7	6	100	0	56	14	17	32	35	1.90
33797089--33797217	51	2.5	53	80	7	140	38	9	16	35	1.81
33804271--33804312	22	1.9	22	90	0	66	14	16	42	26	1.86
33805564--33805644	39	2.1	39	83	4	101	22	19	19	38	1.94
33813261--33813341	29	2.8	29	94	1	146	43	11	8	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33813374--33813408	15	2.3	15	90	5	52	42	2	0	54	1.15
33813552--33813603	16	3.2	16	78	10	61	48	1	32	17	1.58
33818896--33818963	27	2.5	27	90	2	100	8	23	4	63	1.42
33818945--33819014	24	2.9	24	78	19	67	8	27	2	61	1.39
33823199--33823356	33	4.9	33	88	3	207	49	19	2	28	1.61
33824094--33824142	22	2.2	22	85	0	62	53	0	6	40	1.26
33826193--33826381	29	6.5	28	76	9	148	44	24	10	20	1.82
33826196--33826381	58	3.2	57	78	6	212	45	24	10	19	1.82
33826198--33826381	87	2.1	87	82	4	219	45	23	10	19	1.82
33835226--33835284	29	2.0	29	86	0	82	22	8	35	33	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171