genome.fa.s3.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  158  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47102456--47102514	19	3.0	20	76	14	61	37	1	5	55	1.32
47103137--47103652	218	2.4	218	95	0	908	33	20	17	28	1.95
47103416--47103572	80	2.0	79	85	6	210	40	15	11	33	1.83
47115247--47115298	22	2.4	22	80	6	61	13	25	19	42	1.87
47119720--47119818	50	2.0	50	88	4	146	42	12	8	37	1.72
47123362--47123395	18	1.9	18	88	5	52	29	0	5	64	1.17
47126118--47126147	14	2.1	14	93	0	51	23	3	13	60	1.48
47143363--47143438	31	2.5	31	100	0	152	22	15	22	39	1.92
47146461--47146539	31	2.5	31	95	0	140	24	17	12	45	1.83
47147663--47147695	17	1.9	17	88	11	50	51	0	0	48	1.00
47147730--47147789	23	2.7	22	79	5	75	48	0	0	51	1.00
47151617--47151659	14	3.2	13	78	12	50	44	30	0	25	1.55
47151626--47151679	21	2.6	20	81	16	65	44	25	1	27	1.64
47151640--47151691	26	1.9	28	84	7	72	42	28	3	25	1.72
47151694--47151768	35	2.2	35	87	2	107	53	6	10	29	1.61
47152313--47152565	126	2.0	126	92	0	425	19	34	8	37	1.82
47153779--47153843	28	2.2	30	86	8	89	38	3	21	36	1.69
47153831--47154020	30	6.4	30	68	15	101	30	4	30	35	1.77
47153975--47154039	30	2.2	30	80	0	76	32	3	26	38	1.72
47153850--47154039	89	2.1	88	80	6	204	31	3	28	35	1.75
47156290--47156825	117	4.6	115	73	8	404	25	19	30	24	1.98
47156253--47156834	39	15.0	39	71	5	336	24	19	31	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47156240--47156864	156	4.0	156	81	4	708	24	18	31	25	1.98
47156252--47156831	78	7.5	78	80	1	583	24	19	31	24	1.98
47156868--47156948	41	2.0	41	88	9	121	30	17	16	35	1.92
47157190--47157681	49	10.0	48	73	9	229	18	31	16	33	1.93
47157258--47157691	99	4.4	98	78	4	388	17	32	16	33	1.93
47157258--47157817	49	11.3	49	71	8	244	18	32	15	33	1.92
47157486--47157786	149	2.0	147	84	5	383	18	31	15	33	1.93
47158600--47158662	19	3.0	23	82	11	73	0	22	0	77	0.76
47158609--47158662	15	3.6	14	83	11	72	0	16	0	83	0.65
47158630--47158662	9	3.6	9	95	4	57	0	12	0	87	0.53
47158606--47158662	25	2.2	26	84	3	80	0	17	0	82	0.67
47159445--47159488	22	2.0	22	86	8	63	0	25	0	75	0.81
47163725--47163789	30	2.2	30	91	2	105	38	3	20	38	1.68
47163725--47163812	30	3.0	29	83	9	99	36	3	22	37	1.71
47163796--47164018	29	7.7	28	76	11	157	28	6	28	36	1.82
47163910--47163984	28	2.5	30	85	8	100	32	9	22	36	1.86
47164022--47164174	30	5.1	30	73	16	122	40	3	22	33	1.70
47163994--47164169	89	2.0	88	81	5	203	40	4	21	32	1.74
47164923--47164951	3	9.7	3	100	0	58	31	0	0	68	0.89
47165784--47165821	14	2.7	14	80	11	51	34	2	21	42	1.67
47166148--47166182	17	2.2	15	90	10	52	77	0	0	22	0.78
47169129--47169176	13	3.8	13	76	20	57	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47169134--47169176	18	2.3	18	84	11	52	60	0	0	39	0.97
47176603--47176698	48	2.0	48	97	0	183	23	12	21	41	1.87
47178094--47178140	22	2.1	22	96	0	85	40	0	10	48	1.38
47181679--47181712	17	2.0	17	88	0	50	35	0	11	52	1.38
47181702--47181764	17	3.7	17	77	12	58	39	0	4	55	1.21
47181717--47181791	6	13.2	6	73	8	50	44	2	4	49	1.35
47182563--47182627	3	21.7	3	76	6	51	61	1	0	36	1.05
47182570--47182614	9	5.2	9	81	10	58	60	0	0	40	0.97
47182564--47182627	16	4.0	16	80	11	69	62	1	0	35	1.05
47183375--47183539	30	5.6	30	87	5	239	38	25	3	32	1.71
47183361--47183593	30	7.8	30	77	12	207	38	25	3	33	1.73
47183356--47183593	60	4.0	59	84	8	279	37	25	3	32	1.74
47183375--47183593	90	2.4	91	82	8	245	37	26	3	32	1.72
47183548--47183610	29	2.2	29	82	5	74	31	33	1	33	1.68
47196143--47196289	76	1.9	77	90	2	233	31	16	18	34	1.93
47196211--47197038	91	9.1	91	92	1	1363	31	19	18	30	1.96
47196211--47197038	183	4.5	182	94	0	1381	31	19	18	30	1.96
47196211--47197038	274	3.0	273	92	1	1363	31	19	18	30	1.96
47196775--47196924	41	3.4	42	68	24	121	30	19	20	30	1.97
47197324--47197398	6	13.2	6	71	10	50	45	2	4	48	1.35
47197314--47197369	17	3.4	16	80	7	67	41	0	5	53	1.24
47197315--47197391	33	2.3	33	82	6	84	42	2	5	49	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47198183--47198220	9	4.4	9	80	12	53	57	0	0	42	0.98
47198177--47198219	22	1.9	23	90	4	70	58	0	0	41	0.98
47198177--47198233	16	3.8	16	82	8	59	61	1	0	36	1.07
47199120--47199326	30	6.9	29	80	7	175	38	23	4	33	1.76
47199131--47199334	60	3.4	60	82	8	238	38	24	3	33	1.74
47199126--47199334	90	2.3	89	86	4	278	37	24	4	33	1.75
47199168--47199351	30	6.2	28	78	10	79	36	26	3	33	1.73
47210174--47210236	19	3.3	19	80	14	67	34	1	7	55	1.39
47210174--47210236	20	3.2	20	80	10	69	34	1	7	55	1.39
47216185--47216230	2	23.0	2	100	0	92	50	0	0	50	1.00
47222919--47222969	21	2.4	21	83	0	66	27	3	11	56	1.52
47224865--47225254	29	13.3	29	71	19	235	34	2	29	33	1.72
47224865--47225283	59	7.2	58	85	6	519	34	2	29	33	1.71
47225117--47225297	30	6.1	29	73	11	116	33	1	30	34	1.65
47225117--47225311	29	6.6	29	70	16	107	33	1	29	35	1.67
47225148--47225345	29	6.8	28	69	16	89	33	3	26	35	1.74
47224865--47225334	118	4.0	118	86	6	421	34	3	28	33	1.73
47226383--47226431	19	2.6	18	84	9	62	40	2	2	55	1.23
47227090--47227167	6	13.0	6	75	20	74	51	0	3	44	1.19
47227092--47227167	16	4.6	16	80	14	84	52	0	3	43	1.19
47227125--47227167	17	2.6	17	96	3	79	55	0	2	41	1.12
47227131--47227185	27	2.0	27	85	0	74	52	5	1	40	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47227679--47227738	23	2.5	25	81	10	63	18	5	5	71	1.23
47228611--47228636	12	2.2	12	100	0	52	38	7	7	46	1.61
47230001--47230037	5	7.4	5	93	0	56	21	0	5	72	1.04
47240527--47240616	42	2.1	42	83	0	108	37	3	5	53	1.41
47240558--47240613	19	3.1	17	82	10	67	32	3	7	57	1.43
47240564--47240630	17	3.8	17	86	7	73	37	2	5	53	1.41
47240582--47240638	6	9.8	6	77	7	55	45	0	5	49	1.24
47240582--47240638	23	2.5	23	82	5	62	45	0	5	49	1.24
47240583--47240638	17	3.2	17	87	9	78	46	0	5	48	1.25
47241250--47241308	12	5.5	11	76	19	54	59	1	3	35	1.24
47242490--47242620	30	4.4	30	81	9	144	35	25	3	35	1.72
47242490--47242620	60	2.2	58	83	5	165	35	25	3	35	1.72
47242490--47242744	30	8.6	29	73	9	95	32	28	3	35	1.73
47242579--47242774	59	3.4	57	81	8	216	31	32	3	33	1.73
47242548--47242657	29	3.8	29	79	8	98	34	30	1	32	1.69
47242579--47242718	30	4.8	29	72	15	108	32	31	2	34	1.70
47270825--47272131	92	14.2	92	95	0	2341	34	12	16	36	1.86
47272438--47272497	23	2.7	23	86	2	86	38	0	6	55	1.27
47272441--47272512	23	3.2	23	84	7	85	41	0	5	52	1.24
47272438--47272510	6	12.7	6	78	8	62	42	0	5	52	1.24
47272447--47272504	17	3.4	17	84	13	75	41	0	6	51	1.28
47272455--47272510	17	3.2	17	82	9	69	44	0	5	50	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47273119--47273177	12	5.5	11	76	19	54	59	1	3	35	1.24
47274327--47274615	30	9.7	30	81	7	286	38	22	2	36	1.69
47274327--47274587	121	2.2	119	87	6	384	38	21	3	37	1.69
47274327--47274628	60	5.0	60	84	8	366	37	23	2	36	1.69
47274581--47274653	29	2.5	30	84	8	96	36	28	0	34	1.58
47274341--47274674	30	11.2	28	79	9	195	37	23	2	36	1.67
47274581--47274718	59	2.3	59	80	8	147	32	30	3	33	1.75
47276509--47276541	17	1.9	17	93	0	57	33	9	3	54	1.47
47284586--47284657	27	2.7	27	97	2	137	37	2	6	52	1.43
47284586--47284657	13	5.5	12	83	16	90	37	2	6	52	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171