genome.fa.s3.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  100  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32397632--32397726	41	2.3	41	90	0	145	31	13	18	35	1.90
32397967--32398800	50	17.0	49	74	8	551	18	31	17	32	1.94
32397967--32398800	49	17.0	49	75	6	611	18	31	17	32	1.94
32397964--32398800	99	8.5	99	76	6	684	18	31	16	32	1.94
32399741--32399814	20	3.5	19	78	12	58	4	18	0	77	0.93
32399769--32399815	21	2.2	21	85	7	60	0	19	0	80	0.70
32399777--32399815	20	2.0	20	90	10	62	0	17	0	82	0.68
32404629--32404749	29	4.1	30	81	8	142	34	4	27	33	1.76
32404629--32404778	58	2.6	57	84	8	178	34	3	26	35	1.73
32404629--32404773	30	4.9	30	80	5	143	35	3	25	35	1.73
32405447--32405639	97	2.0	97	87	0	278	22	12	33	31	1.92
32410598--32410751	29	5.2	30	81	3	188	33	1	23	41	1.66
32410602--32410761	59	2.7	60	79	9	186	34	1	21	41	1.64
32415575--32415722	23	6.4	23	81	9	169	43	21	22	12	1.86
32415621--32415743	46	2.7	46	87	2	176	43	21	22	12	1.86
32415575--32415719	69	2.1	66	86	10	193	43	20	22	13	1.86
32415575--32415743	23	7.4	22	81	7	144	42	21	23	12	1.87
32422934--32423102	23	7.3	23	82	7	166	42	21	24	11	1.86
32422980--32423102	46	2.7	46	88	2	185	43	21	23	11	1.85
32422934--32423078	69	2.1	66	86	10	193	43	20	23	12	1.86
32424938--32424996	27	2.2	27	90	6	93	57	1	1	38	1.19
32430761--32430797	14	2.8	13	88	8	56	72	0	8	18	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32441911--32441946	18	2.0	18	88	0	54	47	0	50	2	1.15
32448216--32448273	27	2.1	27	90	0	89	29	24	13	32	1.94
32448227--32448331	27	3.9	27	78	0	84	31	21	14	32	1.93
32452703--32452748	23	2.0	23	82	0	56	41	4	6	47	1.49
32453863--32453889	14	1.9	14	100	0	54	51	25	14	7	1.68
32455294--32455501	83	2.5	82	80	7	210	22	11	22	43	1.85
32459120--32459156	17	2.1	18	85	14	51	51	5	0	43	1.24
32459557--32460108	274	2.0	275	97	0	1052	40	12	17	29	1.86
32468707--32469270	283	2.0	283	98	0	1101	27	25	8	38	1.84
32470635--32470706	37	1.9	37	100	0	144	36	25	8	30	1.85
32470635--32470696	21	3.2	21	60	21	53	37	25	6	30	1.81
32473848--32473883	17	2.1	17	89	0	54	44	0	0	55	0.99
32475213--32475243	3	10.3	3	92	0	53	32	0	0	67	0.91
32480325--32480366	5	8.8	5	85	15	54	80	0	19	0	0.70
32481269--32481368	49	2.0	49	86	3	139	46	20	16	18	1.85
32483122--32483201	27	3.0	27	83	3	99	28	16	25	30	1.96
32485972--32486042	33	2.1	34	82	7	83	57	2	0	39	1.13
32497178--32497229	6	8.2	6	75	12	50	19	3	3	73	1.15
32499806--32499838	13	2.5	13	86	13	50	81	3	15	0	0.80
32500719--32500773	25	2.2	25	96	0	101	40	0	20	40	1.52
32500730--32500785	25	2.2	25	83	0	76	46	0	14	39	1.44
32504612--32504760	46	3.2	46	84	4	140	12	22	20	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32504647--32504760	23	5.0	23	92	1	176	13	21	20	44	1.85
32504647--32504805	69	2.3	69	83	9	184	13	23	18	44	1.86
32504647--32504805	46	3.5	43	80	11	133	13	23	18	44	1.86
32511847--32511973	23	5.4	23	86	5	112	10	23	21	44	1.82
32511868--32512018	46	3.2	47	81	9	159	11	23	21	44	1.84
32511881--32512017	69	2.0	66	83	11	168	11	23	21	43	1.85
32521159--32521225	23	3.0	22	76	20	68	37	7	16	38	1.77
32523891--32523931	21	1.9	22	85	5	57	17	0	31	51	1.46
32524533--32524565	14	2.4	14	94	0	57	33	0	6	60	1.21
32528181--32528223	6	7.2	6	89	0	59	48	0	30	20	1.50
32528181--32528235	18	3.2	18	84	5	60	49	0	27	23	1.51
32530202--32530268	30	2.2	31	84	5	84	37	2	19	40	1.67
32532453--32532510	19	3.1	19	84	0	80	48	34	0	17	1.47
32532822--32532875	26	2.1	26	100	0	108	27	14	22	35	1.93
32533364--32533399	6	6.2	6	96	3	65	50	0	13	36	1.43
32533853--32533890	18	2.2	18	85	4	51	36	7	0	55	1.29
32535315--32535439	61	2.0	61	96	0	232	43	11	12	33	1.77
32541779--32541883	33	3.4	30	78	16	101	36	1	1	60	1.19
32541823--32541865	14	3.1	14	77	9	52	34	0	0	65	0.93
32542454--32542487	14	2.4	14	90	0	50	23	5	5	64	1.38
32545068--32545099	12	2.4	14	85	15	50	31	50	9	9	1.66
32545072--32545102	13	2.5	13	94	5	55	32	48	6	12	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32545131--32545173	19	2.2	20	84	12	54	18	2	34	44	1.63
32545449--32545561	49	2.3	47	73	11	111	45	0	3	50	1.25
32554285--32554355	31	2.4	30	83	4	90	45	16	7	30	1.75
32556605--32556666	20	3.0	20	83	4	70	33	3	22	40	1.70
32556595--32556665	11	6.6	11	75	6	65	35	2	19	42	1.66
32559281--32559635	43	8.3	43	82	0	381	29	27	18	24	1.98
32565694--32565862	8	20.6	8	67	4	59	49	3	5	42	1.43
32565695--32565822	50	2.6	50	94	0	220	49	3	6	40	1.46
32565840--32565964	34	3.6	34	71	13	103	43	3	6	47	1.45
32565851--32565907	26	2.2	25	84	12	71	40	1	5	52	1.34
32565811--32565956	68	2.2	66	88	2	211	43	2	6	47	1.42
32565877--32566016	42	3.3	40	75	16	122	45	2	5	46	1.39
32565947--32565972	8	3.2	8	100	0	52	61	0	0	38	0.96
32565987--32566047	22	2.8	22	77	7	70	52	1	0	45	1.10
32567246--32567305	29	2.0	29	83	3	75	36	6	21	35	1.80
32567335--32567403	29	2.4	28	78	4	75	34	2	28	33	1.72
32567396--32567693	29	10.2	30	73	15	164	36	5	26	31	1.79
32567335--32567672	117	2.9	114	83	7	371	35	4	26	33	1.78
32567308--32567681	58	6.4	57	73	11	237	35	4	26	33	1.77
32567515--32567694	30	6.2	28	78	11	134	36	3	26	33	1.73
32568800--32568849	16	3.3	16	74	25	54	30	0	0	70	0.88
32571946--32571970	2	12.5	2	100	0	50	52	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32572569--32572619	21	2.4	21	93	0	93	39	7	43	9	1.67
32572964--32573047	6	14.5	6	74	20	63	45	0	1	53	1.08
32572967--32573019	17	3.3	15	82	15	61	49	0	1	49	1.12
32572970--32573050	23	3.9	21	76	22	73	44	0	1	54	1.08
32572984--32573047	29	2.2	28	86	8	92	43	0	0	56	0.99
32573070--32573136	19	3.9	17	70	20	50	29	4	0	65	1.12
32573075--32573149	17	4.4	16	74	16	62	30	2	1	65	1.15
32573216--32573550	170	2.0	168	91	1	535	29	22	16	31	1.96
32574173--32574362	41	4.7	41	84	1	240	22	27	24	25	2.00
32574345--32574440	40	2.4	40	87	0	138	19	25	18	36	1.95
32576975--32577021	16	2.9	16	84	9	60	17	19	0	63	1.30
32577858--32577895	18	2.1	18	90	9	60	68	0	5	26	1.11
32580244--32580272	2	14.5	2	100	0	58	51	0	48	0	1.00
32580794--32580853	23	2.5	24	79	15	70	41	0	0	58	0.98
32603513--32603791	29	9.6	28	72	16	142	35	3	25	35	1.72
32603513--32603789	59	4.8	57	79	9	281	35	3	25	35	1.72
32604903--32604944	13	3.4	12	80	12	50	40	7	0	52	1.29
32606121--32606323	86	2.4	86	96	0	370	23	24	17	34	1.96
32606205--32606701	207	2.4	205	91	0	778	23	22	18	35	1.96
32606497--32606820	120	2.7	120	86	1	443	23	21	19	35	1.96
32606291--32607026	326	2.3	327	88	0	1098	23	22	19	35	1.96
32606618--32607064	206	2.2	206	92	0	732	23	22	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32606882--32607304	158	2.7	158	95	0	765	22	21	21	34	1.97
32607368--32607571	39	5.2	39	68	12	141	26	22	26	23	2.00
32607368--32607595	78	2.9	78	88	1	314	28	20	26	25	1.99
32607878--32608181	150	2.0	150	90	0	473	13	25	21	40	1.89
32607848--32608147	50	6.0	50	71	14	199	14	26	20	38	1.91
32609169--32609247	7	11.3	7	75	24	78	1	16	0	82	0.74
32609168--32609251	28	3.0	28	84	10	111	2	17	0	79	0.83
32609168--32609242	12	5.8	12	81	18	73	1	17	0	81	0.76
32614868--32615207	29	11.7	28	70	15	158	35	4	24	35	1.76
32614894--32615207	59	5.4	57	77	8	276	35	4	25	34	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171