genome.fa.s3.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  80  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26975997--26976705	206	3.5	201	83	4	898	34	18	23	23	1.96
26976323--26977007	358	1.9	363	88	3	1049	35	18	22	23	1.96
26976702--26977127	216	2.0	216	90	0	681	36	19	22	22	1.95
26976122--26977213	574	1.9	559	86	4	1546	35	18	22	23	1.96
26977594--26977645	6	8.8	6	77	10	54	44	3	3	48	1.39
26977594--26977645	23	2.2	23	89	3	77	44	3	3	48	1.39
26977596--26977640	11	4.0	11	80	5	54	42	4	2	51	1.34
26978424--26978482	18	2.9	21	75	19	61	55	1	0	42	1.09
26978749--26978898	59	2.6	58	77	5	151	24	19	11	44	1.83
26979180--26979364	96	1.9	96	87	4	275	30	18	14	36	1.90
26982570--26982622	16	3.3	16	70	0	52	24	13	7	54	1.64
26983530--26983701	59	2.9	59	79	10	181	31	19	15	32	1.93
26983710--26984137	62	7.0	61	77	5	368	37	15	17	28	1.92
26983756--26984137	121	3.2	119	83	5	430	36	16	17	29	1.92
26984405--26984491	9	10.1	9	75	9	74	33	10	0	56	1.33
26984402--26984463	3	20.7	3	86	0	88	32	4	0	62	1.16
26987523--26987743	61	3.7	60	89	6	331	39	13	15	31	1.86
26987750--26987878	61	2.1	61	78	5	136	34	17	15	32	1.92
26989663--26989765	53	1.9	53	80	3	118	49	1	3	44	1.31
26992754--26992797	9	4.8	9	83	10	54	2	15	0	81	0.78
26992754--26992797	19	2.4	17	85	11	52	2	15	0	81	0.78
26997613--26997656	23	1.9	23	90	0	70	27	20	22	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27003228--27003271	20	2.2	20	84	8	54	38	0	2	59	1.10
27003214--27003272	30	2.0	30	89	0	91	37	1	3	57	1.25
27004498--27004542	23	2.0	22	86	4	63	37	2	6	53	1.40
27005761--27005794	17	1.9	18	88	5	52	50	11	5	32	1.63
27007306--27007378	6	12.2	6	80	16	89	43	2	0	53	1.15
27007307--27007369	17	3.9	16	83	12	85	42	3	0	53	1.16
27007306--27007378	31	2.4	29	87	12	112	43	2	0	53	1.15
27008595--27008732	23	5.9	23	84	5	163	42	23	23	10	1.84
27009174--27009202	10	2.7	11	89	10	51	24	17	0	58	1.38
27010983--27011029	23	2.0	23	84	8	60	53	2	17	27	1.55
27011854--27012034	30	6.0	31	81	4	174	39	23	2	34	1.69
27012008--27012139	58	2.2	59	89	6	205	32	31	1	34	1.67
27012044--27012139	30	3.2	29	68	19	81	31	32	2	34	1.70
27023867--27024125	68	3.8	68	92	2	421	34	13	20	30	1.92
27023910--27024090	31	5.5	31	69	24	111	34	13	20	30	1.91
27024085--27024165	40	2.0	40	97	0	153	35	12	22	29	1.91
27023949--27024301	176	2.0	176	96	0	643	34	14	20	30	1.92
27024125--27024581	68	6.7	68	94	0	772	34	15	20	29	1.93
27024125--27024581	136	3.4	136	97	0	860	34	15	20	29	1.93
27023881--27024369	244	2.0	244	95	0	888	34	13	21	30	1.92
27024963--27025035	6	12.2	6	79	16	80	45	2	0	52	1.15
27024964--27025026	17	3.9	16	83	12	85	42	3	0	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27024968--27025027	31	1.9	31	93	6	104	43	3	0	53	1.17
27026071--27026117	23	2.0	23	84	8	60	53	2	17	27	1.55
27026947--27027181	30	7.8	30	81	4	233	39	22	3	34	1.71
27026939--27027181	90	2.7	87	80	10	272	39	22	3	34	1.72
27030628--27030666	18	2.2	18	90	9	62	17	10	7	64	1.48
27031544--27031620	23	3.4	23	89	5	113	18	15	11	54	1.70
27035127--27035182	25	2.3	25	79	11	64	51	1	1	44	1.22
27037946--27037974	14	2.1	14	100	0	58	55	0	0	44	0.99
27038065--27038112	16	3.1	16	84	3	62	2	47	27	22	1.62
27038391--27038424	17	2.0	17	88	0	50	41	0	2	55	1.15
27041565--27041640	26	2.8	26	78	4	71	56	9	1	32	1.39
27044417--27044468	26	2.0	26	88	3	79	17	26	3	51	1.62
27044505--27044566	27	2.3	26	78	8	70	27	33	22	16	1.95
27044578--27044616	15	2.6	15	79	0	51	20	5	0	74	1.01
27045719--27045771	15	3.5	15	76	0	61	20	0	9	69	1.15
27045797--27045876	27	3.0	27	85	3	99	21	28	31	18	1.97
27055725--27055816	17	5.7	16	83	11	116	42	2	0	55	1.12
27055719--27055816	6	17.0	6	70	19	75	42	2	0	55	1.11
27055714--27055816	11	9.0	11	70	16	66	41	1	0	55	1.17
27057775--27058021	30	8.4	27	70	19	131	35	30	2	31	1.69
27057796--27058165	59	6.3	59	86	4	430	35	29	2	32	1.71
27057769--27058045	29	9.5	29	69	11	145	36	29	2	31	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27058066--27058150	29	2.9	29	67	13	75	34	25	5	34	1.80
27070239--27070991	76	10.0	76	93	2	1204	32	15	19	32	1.93
27070861--27070991	69	1.9	69	92	3	219	36	13	20	29	1.91
27071304--27071395	17	5.7	16	83	11	116	42	2	0	55	1.12
27071298--27071395	6	17.0	6	70	19	75	42	2	0	55	1.11
27071293--27071395	11	9.0	11	70	16	66	41	1	0	55	1.17
27071445--27071505	27	2.3	27	91	0	104	44	29	13	13	1.81
27073364--27073575	29	7.2	29	71	17	98	35	27	2	34	1.72
27073393--27073634	30	8.2	28	69	17	125	34	28	2	34	1.69
27073393--27073780	59	6.6	58	81	8	346	34	29	2	34	1.71
27073412--27073780	118	3.1	117	86	3	492	34	28	2	34	1.71
27073421--27073683	29	9.0	28	68	15	156	33	29	2	34	1.72
27073445--27073772	29	11.2	29	64	18	117	34	28	2	34	1.72
27075971--27076018	21	2.3	20	82	13	53	39	8	6	45	1.59
27077796--27077845	25	2.0	24	81	14	57	30	2	24	44	1.65
27079246--27079298	25	2.2	25	83	10	65	50	9	22	16	1.74
27083454--27084248	399	2.0	399	97	0	1520	43	13	12	30	1.82
27084981--27085014	14	2.4	14	90	0	50	29	0	20	50	1.49
27087814--27087848	18	1.9	18	100	0	70	28	11	22	37	1.89
27087983--27088016	14	2.4	14	90	0	50	29	0	20	50	1.49
27088450--27088494	21	2.2	20	88	4	63	80	2	13	4	0.97
27106588--27106631	17	2.6	16	89	10	61	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27108613--27108652	18	2.2	18	100	0	80	32	10	10	47	1.70
27118396--27118424	2	14.5	2	100	0	58	0	48	0	51	1.00
27121261--27121308	23	2.1	23	100	0	96	12	16	22	47	1.80
27121268--27121319	23	2.4	22	87	9	72	15	17	19	48	1.82
27122988--27123058	30	2.4	30	82	0	79	16	29	12	40	1.86
27133977--27134093	57	2.1	57	98	0	225	38	12	11	36	1.81
27141520--27141553	2	17.0	2	100	0	68	50	50	0	0	1.00
27148981--27149011	16	1.9	16	93	0	53	67	9	3	19	1.33
27151197--27151231	9	3.9	9	85	14	54	80	8	0	11	0.92
27153624--27153666	7	5.4	8	81	18	54	32	11	11	44	1.77
27153624--27153678	16	3.6	16	90	7	80	30	12	14	41	1.83
27153666--27153691	9	2.9	9	100	0	52	23	11	23	42	1.86
27153819--27153845	13	2.1	13	100	0	54	44	44	0	11	1.39
27153945--27154041	42	2.3	42	90	0	149	48	20	0	30	1.50
27154580--27154614	10	3.6	10	88	3	54	65	2	0	31	1.07
27155921--27155963	20	2.2	19	87	4	59	55	0	0	44	0.99
27156930--27157005	29	2.6	29	80	4	80	50	15	10	23	1.75
27157335--27157359	8	3.1	8	100	0	50	16	0	0	84	0.63
27160693--27160726	17	2.1	16	88	5	50	55	0	0	44	0.99
27160717--27160768	20	2.6	21	79	14	65	38	5	0	55	1.24
27164287--27164337	24	2.1	24	85	0	66	56	9	9	23	1.61
27166274--27166324	24	2.1	24	92	0	84	54	11	11	21	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27167659--27167685	3	9.0	3	100	0	54	33	0	0	66	0.92
27171152--27171207	20	2.7	21	81	15	55	50	5	1	42	1.35
27172709--27172756	10	4.7	10	78	14	53	35	0	2	62	1.07
27172700--27172756	20	2.7	22	74	20	59	38	0	1	59	1.08
27172697--27172756	31	2.0	28	87	9	84	40	0	1	58	1.08
27172767--27172840	23	3.3	23	78	12	66	40	0	1	58	1.07
27172794--27172856	32	1.9	34	83	6	85	38	0	1	60	1.07
27177374--27177418	6	7.5	6	89	0	63	46	0	31	22	1.52
27187682--27187731	21	2.4	21	89	0	73	44	14	4	38	1.63
27190498--27190547	23	2.2	23	92	0	82	10	26	24	40	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171