genome.fa.s3.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  126  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40073164--40073207	22	2.0	23	86	8	65	34	4	18	43	1.70
40074844--40074876	12	2.8	12	95	0	57	36	27	6	30	1.81
40077604--40077646	14	2.9	15	83	13	54	11	6	0	81	0.87
40077903--40077970	31	2.2	31	89	0	100	23	13	14	48	1.79
40078980--40079056	31	2.5	31	83	6	86	51	7	5	35	1.53
40078971--40079056	31	2.8	30	77	7	84	48	8	6	36	1.60
40085695--40085736	20	2.1	20	95	0	75	61	11	7	19	1.52
40085811--40085845	17	2.1	17	89	10	54	45	0	0	54	0.99
40093889--40093978	20	4.5	20	77	4	74	32	7	13	46	1.71
40104939--40104995	21	2.7	21	80	0	60	36	21	14	28	1.92
40104937--40105282	113	3.1	113	93	0	593	39	24	11	24	1.89
40105050--40105126	21	3.7	21	77	10	77	35	27	11	25	1.91
40105165--40105222	21	2.8	21	78	5	64	37	25	12	24	1.90
40122182--40122218	18	2.0	19	89	5	58	32	16	10	40	1.83
40133312--40133361	14	3.8	13	77	15	57	4	16	0	80	0.87
40133312--40133364	19	2.7	18	81	16	61	3	15	0	81	0.83
40133312--40133365	18	3.0	17	80	17	56	3	16	0	79	0.87
40140155--40140195	17	2.4	18	80	19	52	14	21	17	46	1.84
40146690--40146918	116	2.0	116	89	1	354	20	3	23	51	1.64
40147674--40147748	24	3.1	24	86	0	105	22	10	10	56	1.64
40149672--40149734	24	2.6	24	89	0	99	25	14	9	50	1.72
40151010--40151071	30	2.1	30	100	0	124	35	25	3	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40152267--40152337	24	2.8	25	82	12	83	32	2	0	64	1.08
40152339--40152396	26	2.2	26	81	6	73	46	1	1	50	1.22
40152617--40152653	2	18.5	2	88	0	56	56	0	0	43	0.99
40153859--40153918	30	2.0	30	86	0	84	45	18	18	18	1.86
40153932--40153972	18	2.3	18	86	0	55	19	21	39	19	1.93
40154691--40154715	13	1.9	13	100	0	50	52	32	0	16	1.44
40162956--40163038	30	2.7	31	87	5	125	34	26	4	33	1.78
40162950--40163125	30	6.0	30	76	9	121	34	26	5	33	1.79
40162968--40163149	30	6.2	29	74	11	120	34	25	4	35	1.76
40162998--40163150	58	2.6	58	71	14	143	34	26	3	35	1.75
40166200--40166275	40	1.9	40	89	5	118	44	18	19	17	1.87
40166217--40166344	40	3.2	40	79	8	127	45	21	16	17	1.86
40166345--40166739	41	9.7	40	74	6	195	32	16	27	23	1.96
40166359--40166739	123	3.1	123	79	5	308	31	17	27	23	1.97
40166378--40166757	82	4.7	80	79	4	350	32	17	26	23	1.97
40168576--40168679	41	2.5	41	81	3	120	38	16	23	22	1.93
40172350--40172753	190	2.1	192	89	1	634	35	13	15	35	1.87
40172873--40172935	32	2.0	31	84	9	83	41	7	3	47	1.48
40195403--40195589	49	3.8	48	73	12	164	15	23	19	41	1.90
40195507--40195785	98	2.8	98	77	7	282	17	22	18	42	1.89
40195562--40195785	49	4.6	49	72	0	151	16	22	19	41	1.89
40221548--40221580	15	2.1	16	88	5	50	15	15	12	57	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40227099--40227140	22	1.9	22	90	9	68	14	7	23	54	1.64
40234351--40234934	43	13.6	43	78	2	357	23	29	26	20	1.99
40234351--40236430	86	24.4	86	69	10	533	23	29	24	22	1.99
40234351--40234944	129	4.6	128	76	2	501	23	29	26	20	1.99
40235305--40235451	75	2.0	74	85	5	197	22	33	24	19	1.97
40235225--40235544	161	2.0	162	82	1	392	22	31	22	23	1.98
40235797--40236275	43	11.2	43	79	2	435	22	27	27	22	1.99
40236281--40236568	86	3.3	86	78	1	317	24	32	19	23	1.97
40237166--40238116	258	3.7	257	79	2	944	21	30	22	25	1.99
40237166--40238116	86	11.1	86	78	3	817	21	30	22	25	1.99
40240452--40240770	43	7.4	43	80	6	184	18	28	29	22	1.98
40240436--40241406	86	11.7	86	72	10	737	19	26	31	22	1.98
40240451--40240755	128	2.4	128	79	6	303	18	28	30	22	1.98
40240743--40240838	33	2.8	35	84	6	115	21	27	32	18	1.97
40240782--40241406	43	14.9	42	73	12	376	19	26	31	22	1.98
40241077--40241166	35	2.6	35	90	0	144	24	27	28	18	1.98
40240888--40241338	242	1.9	242	80	4	543	20	27	30	21	1.98
40249292--40250674	86	15.9	86	74	11	709	21	25	34	19	1.96
40249299--40249876	259	2.2	258	83	5	632	21	25	33	19	1.97
40249306--40250801	129	11.5	129	72	11	600	21	25	34	19	1.96
40249300--40250801	43	34.7	43	66	13	409	21	25	34	19	1.96
40250383--40250758	182	2.1	182	88	2	560	20	25	35	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40250512--40250633	53	2.3	53	88	2	176	24	26	34	14	1.94
40251434--40252558	43	26.4	43	72	13	672	18	27	33	20	1.96
40251434--40252558	86	13.2	86	76	6	795	18	27	33	20	1.96
40251605--40251870	128	2.1	129	80	4	297	21	25	33	19	1.97
40251499--40251977	214	2.2	215	78	6	490	19	26	33	20	1.97
40269399--40269423	3	8.3	3	100	0	50	36	0	0	64	0.94
40269478--40269506	3	9.7	3	100	0	58	34	0	0	65	0.93
40269738--40271017	43	29.7	43	69	14	574	20	26	35	17	1.95
40269827--40270890	428	2.5	430	92	2	1710	20	26	35	17	1.95
40270732--40270850	51	2.3	52	89	4	188	23	28	34	13	1.93
40270603--40270974	179	2.1	181	90	5	603	20	27	35	16	1.94
40270787--40271017	128	1.8	128	91	1	383	19	27	36	16	1.93
40271654--40272769	43	26.4	43	74	14	777	16	27	35	19	1.94
40271654--40272762	86	13.1	85	79	9	905	16	27	35	19	1.94
40271654--40272762	129	8.8	128	74	13	895	16	27	35	19	1.94
40272148--40272380	75	2.9	76	82	8	245	18	25	36	19	1.94
40280275--40280299	3	8.3	3	100	0	50	36	0	0	64	0.94
40280354--40280382	3	9.7	3	100	0	58	34	0	0	65	0.93
40280600--40281176	43	13.2	43	71	14	312	19	27	35	17	1.95
40280593--40281049	86	5.2	86	74	13	428	20	27	34	17	1.95
40280684--40281176	129	3.7	130	81	12	560	20	27	35	17	1.95
40280762--40281133	182	2.0	182	90	3	579	20	27	34	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40280887--40281008	53	2.3	53	91	2	194	24	27	34	13	1.93
40281812--40282927	43	26.4	43	74	14	779	16	28	35	19	1.94
40281812--40282927	86	13.2	86	78	9	877	16	28	35	19	1.94
40281812--40282927	129	8.8	128	74	13	884	16	28	35	19	1.94
40282306--40282538	75	2.9	76	81	8	236	18	24	36	20	1.95
40296092--40296116	3	8.3	3	100	0	50	36	0	0	64	0.94
40296171--40296199	3	9.7	3	100	0	58	34	0	0	65	0.93
40296419--40297713	43	30.0	43	69	14	683	20	26	35	17	1.95
40296581--40296820	130	1.9	129	83	2	302	21	27	32	17	1.96
40297306--40297679	180	2.1	182	90	4	598	20	27	35	17	1.95
40297438--40297554	53	2.2	52	90	3	182	25	28	32	13	1.94
40298356--40299470	43	26.4	43	74	12	800	16	28	34	19	1.94
40298573--40299427	247	3.4	244	77	13	743	17	27	35	19	1.94
40310490--40310514	3	8.3	3	100	0	50	36	0	0	64	0.94
40310569--40310597	3	9.7	3	100	0	58	34	0	0	65	0.93
40310927--40311201	129	2.1	130	89	2	419	19	26	35	17	1.94
40310808--40311070	86	3.1	86	87	2	368	19	27	34	17	1.95
40311013--40312093	86	12.4	86	76	12	747	20	26	35	17	1.95
40310979--40311218	130	1.9	129	83	2	302	21	27	32	17	1.96
40311229--40311632	129	3.1	128	91	3	612	19	26	35	17	1.94
40310927--40311997	431	2.5	431	92	2	1759	20	26	35	17	1.95
40311654--40312124	129	3.6	129	82	11	537	19	26	36	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40311835--40311956	53	2.3	53	91	2	194	24	27	34	13	1.93
40311706--40312081	182	2.1	182	91	3	616	20	26	35	17	1.94
40311887--40312124	43	5.5	43	73	12	184	19	26	36	16	1.93
40312761--40313876	43	26.4	43	74	14	770	16	28	35	19	1.94
40312761--40313876	86	13.2	86	78	9	868	16	28	35	19	1.94
40312761--40313876	129	8.8	128	74	13	875	16	28	35	19	1.94
40313255--40313487	75	2.9	76	81	8	236	18	24	36	20	1.95
40321381--40321405	3	8.3	3	100	0	50	36	0	0	64	0.94
40321460--40321488	3	9.7	3	100	0	58	34	0	0	65	0.93
40321818--40322092	129	2.1	130	89	2	419	19	26	35	17	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171