genome.fa.s3.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  141  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43244108--43244207	43	2.3	43	89	3	157	32	11	12	45	1.76
43245115--43245155	21	2.0	21	85	9	57	19	4	31	43	1.72
43246904--43246942	20	2.1	17	86	13	51	64	10	2	23	1.37
43247746--43247790	21	2.1	21	91	0	72	22	11	0	66	1.22
43247778--43247813	19	1.9	19	88	5	56	27	11	5	55	1.57
43249830--43249873	23	1.9	23	95	0	79	20	0	15	63	1.31
43251910--43251948	18	2.2	18	100	0	78	23	5	5	66	1.32
43251910--43251958	18	2.7	18	90	6	64	24	6	4	65	1.33
43256831--43257092	131	2.0	131	86	1	364	21	22	25	30	1.99
43256945--43257249	157	1.9	157	87	1	441	22	24	25	27	2.00
43257102--43257381	131	2.1	132	84	3	359	23	23	23	28	2.00
43261530--43261609	40	2.0	40	90	0	124	28	18	26	26	1.98
43261923--43262139	98	2.2	97	80	4	222	19	28	17	34	1.94
43261995--43262472	49	9.8	49	70	8	229	20	25	17	37	1.93
43261984--43262177	98	2.0	98	88	0	289	19	26	18	36	1.94
43261995--43262293	147	2.0	147	80	5	336	19	25	18	36	1.94
43261960--43262421	245	1.9	245	88	1	703	20	25	17	36	1.94
43262142--43262479	98	3.5	97	80	5	256	20	24	16	38	1.93
43262082--43262372	147	2.0	146	83	4	363	20	25	16	37	1.94
43262106--43262427	147	2.2	147	80	6	332	20	25	15	38	1.92
43262229--43262476	98	2.5	98	84	0	262	20	23	16	39	1.92
43268872--43268914	19	2.3	19	84	8	52	58	4	0	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43270934--43270983	2	25.0	2	100	0	100	50	0	0	50	1.00
43271400--43271433	2	17.0	2	100	0	68	50	0	0	50	1.00
43271474--43271503	2	15.0	2	92	0	51	46	0	3	50	1.18
43271476--43271516	16	2.6	16	88	0	55	41	4	7	46	1.53
43271793--43271827	18	1.9	18	88	0	52	25	20	42	11	1.85
43273464--43273622	80	2.0	80	91	0	255	42	8	11	38	1.71
43285964--43286049	31	2.9	31	76	11	81	44	12	8	34	1.72
43302512--43302668	42	3.7	42	81	0	152	21	15	19	43	1.88
43302505--43302687	84	2.2	84	80	2	188	21	16	19	43	1.88
43302512--43302687	42	4.2	42	77	2	147	21	15	19	43	1.88
43304906--43304971	31	2.1	31	91	0	105	46	4	6	42	1.48
43309929--43309960	16	1.9	17	93	6	57	43	9	0	46	1.35
43319526--43319578	24	2.2	23	81	15	63	20	5	11	62	1.49
43321788--43321819	2	16.0	2	93	0	55	46	50	0	3	1.17
43325118--43325239	60	2.0	60	92	3	201	27	16	25	30	1.97
43329904--43329949	15	3.0	15	84	12	58	2	21	0	76	0.90
43330639--43330664	6	4.3	6	100	0	52	0	15	0	84	0.62
43330683--43330730	24	2.0	24	91	0	78	4	25	8	62	1.41
43332775--43332820	20	2.2	21	85	11	60	76	6	6	10	1.16
43348478--43348525	24	2.0	24	84	12	62	14	8	6	70	1.31
43356088--43356119	15	2.1	15	94	0	55	50	0	3	46	1.17
43364492--43364524	16	2.1	16	100	0	66	42	12	18	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43365587--43365622	17	2.1	17	89	0	54	38	0	0	61	0.96
43367780--43368177	30	13.4	30	82	4	434	36	26	1	36	1.66
43372732--43373059	30	11.1	28	78	11	259	35	24	2	37	1.69
43372766--43373063	30	10.1	29	80	8	264	36	24	2	36	1.67
43384515--43385296	209	3.7	209	83	4	952	36	17	22	23	1.94
43384515--43385295	419	1.9	418	84	4	1045	36	17	22	23	1.94
43387213--43387545	90	3.8	89	79	7	320	36	23	2	37	1.68
43387213--43387545	30	11.3	29	77	9	264	36	23	2	37	1.68
43387864--43387903	20	2.0	20	90	0	62	42	22	7	27	1.80
43389231--43389607	43	8.8	43	67	14	172	21	33	23	21	1.97
43389227--43389607	86	4.4	86	89	2	543	21	33	23	21	1.97
43390269--43391200	86	10.9	86	78	6	798	23	30	21	24	1.99
43390844--43391152	43	7.3	43	65	18	139	22	29	23	23	1.99
43390834--43391152	166	1.9	165	84	4	428	22	30	23	22	1.99
43395610--43396034	58	7.3	58	84	6	506	36	2	27	33	1.70
43395778--43396054	30	9.4	28	68	24	105	36	2	27	33	1.71
43396189--43396499	162	1.9	160	93	2	534	45	13	15	25	1.83
43398098--43398160	27	2.4	26	84	10	76	52	0	3	44	1.17
43398112--43398177	6	11.2	6	70	20	50	54	0	4	40	1.21
43398112--43398177	17	4.1	17	78	11	75	54	0	4	40	1.21
43398126--43398196	11	6.5	11	72	15	58	56	0	4	39	1.19
43398098--43398194	31	3.3	29	81	8	99	53	0	4	42	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43401753--43401802	19	2.5	20	84	12	68	38	4	0	58	1.17
43401753--43401818	19	3.4	18	76	19	62	39	4	0	56	1.20
43401823--43401865	21	2.0	23	86	9	63	27	4	6	60	1.43
43404565--43404607	16	2.8	16	80	16	54	18	25	0	55	1.42
43415830--43415993	85	1.9	85	97	0	310	29	19	26	25	1.99
43416108--43416237	66	2.0	65	80	7	147	62	14	13	10	1.55
43417868--43418443	49	11.8	49	73	6	434	36	15	26	20	1.93
43417884--43418479	196	3.0	196	85	1	811	36	16	26	20	1.93
43417884--43418479	98	6.1	98	86	2	732	36	16	26	20	1.93
43420264--43420297	17	2.0	17	88	0	50	47	0	5	47	1.26
43421087--43421344	30	8.6	30	83	2	313	35	23	0	40	1.60
43421086--43421344	89	2.9	89	86	2	340	35	23	0	40	1.60
43421091--43421375	119	2.4	119	84	5	353	35	23	1	40	1.65
43421087--43421375	60	4.8	60	75	12	256	34	23	1	39	1.65
43423483--43423856	49	7.6	49	81	2	331	35	14	27	21	1.93
43426697--43427110	205	2.0	205	100	0	828	31	33	9	25	1.88
43431294--43431616	173	1.9	173	89	1	504	34	23	19	22	1.97
43435597--43435659	28	2.2	28	83	5	83	26	12	28	31	1.93
43435698--43435831	59	2.3	59	82	7	148	35	8	23	33	1.84
43435728--43436010	146	1.9	145	81	7	342	33	4	25	36	1.77
43435730--43436124	29	13.7	30	72	13	212	34	3	24	37	1.73
43435730--43436086	59	6.3	57	73	12	193	33	3	24	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43435990--43436035	22	2.1	22	88	4	67	39	2	17	41	1.62
43435904--43436105	109	1.9	109	90	2	325	37	1	21	39	1.65
43435965--43436064	51	2.0	49	88	3	146	38	1	20	41	1.59
43436013--43436145	58	2.2	60	85	2	180	37	2	20	39	1.65
43435854--43436158	168	1.8	168	82	4	400	35	2	23	38	1.69
43437192--43437242	25	2.0	25	84	0	66	19	9	49	21	1.77
43437475--43437532	17	3.4	17	81	11	64	50	3	3	43	1.36
43438201--43438356	52	3.2	52	67	23	167	29	19	17	33	1.94
43438193--43438371	92	1.9	92	97	0	340	31	18	16	32	1.94
43438444--43438704	100	2.6	100	85	6	350	17	24	18	39	1.92
43441361--43441445	6	14.3	6	80	11	104	43	2	0	54	1.13
43441352--43441442	17	5.6	16	87	8	123	40	2	0	57	1.11
43441352--43441443	48	1.9	47	93	2	157	41	2	0	56	1.11
43441367--43441419	11	5.1	10	77	22	56	41	1	0	56	1.10
43441363--43441468	48	2.2	47	83	6	124	48	2	0	48	1.22
43441558--43441605	14	3.6	14	77	8	55	35	29	12	22	1.91
43443331--43443685	30	11.8	30	91	1	534	36	24	3	35	1.73
43443700--43443849	29	5.1	28	69	18	92	31	25	3	40	1.72
43443658--43443849	58	3.3	58	81	7	210	32	27	2	37	1.71
43443727--43443824	29	3.4	28	76	14	101	30	25	3	40	1.71
43443749--43443849	29	3.4	29	74	17	93	33	23	2	39	1.70
43448782--43449105	29	11.1	30	73	13	221	36	25	2	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43448771--43449089	172	1.8	174	85	2	455	36	25	3	34	1.72
43448763--43449105	60	5.9	58	76	10	281	37	25	2	34	1.71
43449059--43449193	59	2.3	58	83	3	164	31	26	7	34	1.84
43450442--43450496	25	2.2	25	86	0	74	18	9	50	21	1.74
43450728--43450820	17	5.5	17	83	3	107	55	3	0	40	1.16
43450728--43450820	35	2.7	34	85	4	125	55	3	0	40	1.16
43455287--43455319	16	2.0	17	94	5	59	36	0	21	42	1.53
43455286--43455344	17	3.0	22	81	18	76	30	0	30	38	1.57
43455323--43455400	29	2.7	29	86	7	104	32	3	28	35	1.75
43456050--43456098	25	2.0	25	84	11	66	28	20	6	44	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171