genome.fa.s3.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  147  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44505286--44505451	59	2.8	58	82	6	174	31	7	26	34	1.84
44505297--44505487	88	2.2	88	83	5	226	32	7	24	35	1.84
44505408--44505542	60	2.3	59	85	5	173	34	4	22	39	1.74
44507497--44507562	6	11.2	6	75	8	64	54	1	1	42	1.18
44507510--44507562	24	2.2	24	96	0	97	56	0	1	41	1.10
44508219--44508306	39	2.3	39	89	0	140	21	23	29	25	1.99
44508518--44509011	98	5.0	98	88	1	661	20	25	17	37	1.94
44508529--44509008	49	9.8	50	73	8	387	19	25	16	37	1.93
44516560--44516593	16	2.1	17	94	5	61	44	2	0	52	1.16
44516566--44516594	11	2.7	11	94	5	51	48	0	0	51	1.00
44517387--44517449	17	3.7	17	67	23	51	20	28	0	50	1.48
44524301--44524362	26	2.4	26	86	0	79	19	17	40	22	1.91
44524493--44524584	17	5.4	17	78	2	96	54	3	3	39	1.33
44524965--44525021	23	2.5	23	91	0	87	42	1	1	54	1.21
44525373--44525412	16	2.6	16	84	7	57	45	0	0	55	0.99
44527870--44527944	30	2.4	29	86	8	96	22	29	12	36	1.90
44533128--44533219	24	3.8	24	97	0	166	53	5	13	28	1.61
44535149--44535199	24	2.1	24	92	0	84	54	11	11	21	1.68
44538890--44538928	17	2.3	17	90	0	60	46	25	12	15	1.81
44541105--44541220	35	3.4	34	86	2	160	39	1	3	55	1.27
44541137--44541214	6	13.5	6	74	17	76	43	2	1	52	1.23
44541140--44541212	11	6.9	11	71	21	50	39	2	1	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44541105--44541225	52	2.3	52	85	2	154	41	1	3	53	1.27
44541105--44541231	17	7.4	17	83	3	155	41	2	3	52	1.30
44542779--44542999	29	7.6	27	71	16	122	38	25	4	32	1.75
44542809--44543095	59	4.9	59	82	5	309	37	26	3	32	1.75
44542845--44543067	29	7.7	27	71	20	141	38	27	3	30	1.72
44542783--44543095	58	5.4	58	80	8	316	36	26	4	32	1.77
44555283--44555907	201	3.1	199	81	6	710	35	18	21	24	1.96
44556236--44556345	17	6.4	17	83	4	130	41	0	3	53	1.24
44556236--44556345	35	3.2	34	84	5	114	41	0	3	53	1.24
44556268--44556328	6	10.5	6	78	7	72	44	0	1	54	1.10
44556271--44556326	11	4.9	11	82	10	60	39	0	1	58	1.08
44556236--44556345	52	2.1	52	87	0	157	41	0	3	53	1.24
44558205--44558312	29	3.8	27	76	10	99	36	26	3	33	1.74
44558237--44558330	29	3.2	30	76	10	113	36	28	3	31	1.73
44558268--44558372	49	2.1	49	91	1	165	37	30	1	30	1.68
44558320--44558386	30	2.3	31	82	10	86	43	26	0	29	1.55
44558340--44558451	30	3.7	30	74	8	102	38	23	1	36	1.65
44558320--44558539	59	3.7	58	74	8	176	37	23	2	36	1.68
44558432--44558573	59	2.4	60	82	7	173	34	21	3	40	1.71
44570188--44570245	29	1.9	31	89	6	93	55	5	1	37	1.33
44574712--44574757	21	2.2	21	92	0	74	32	15	6	45	1.71
44575934--44575996	23	2.7	23	87	4	92	39	1	4	53	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44576619--44576656	2	19.5	2	89	5	60	50	0	2	47	1.15
44576621--44576654	17	2.0	17	94	0	59	50	0	2	47	1.16
44576619--44576657	19	2.1	19	95	0	69	51	0	2	46	1.14
44576479--44576810	184	1.8	184	93	0	574	43	15	10	29	1.80
44577421--44577453	15	2.2	15	94	0	57	60	0	0	39	0.97
44580617--44580681	30	2.2	30	86	5	87	23	3	16	56	1.54
44581432--44581588	28	5.6	27	72	16	101	57	9	8	24	1.57
44581431--44581564	57	2.4	55	77	15	139	57	8	8	25	1.57
44581528--44581594	26	2.5	27	80	7	75	64	8	4	22	1.41
44587586--44587663	22	3.5	22	91	1	129	11	21	25	41	1.87
44588291--44588357	22	3.0	22	79	12	66	38	23	20	16	1.92
44588295--44588369	23	3.3	23	83	10	93	38	24	22	14	1.92
44592904--44592980	23	3.3	23	87	0	109	10	24	19	45	1.81
44592924--44593047	23	5.5	22	80	7	97	12	22	25	40	1.88
44595435--44595504	18	3.8	19	79	7	65	62	4	1	31	1.23
44595431--44595484	28	1.9	28	85	7	74	66	3	0	29	1.09
44595754--44595797	19	2.4	18	80	3	52	27	2	0	70	0.99
44595822--44595864	10	4.4	9	88	11	59	39	2	0	58	1.11
44595822--44595864	19	2.2	20	88	12	63	39	2	0	58	1.11
44600857--44600909	27	2.0	27	96	0	97	45	7	0	47	1.31
44600867--44600921	27	2.0	27	86	6	76	49	10	0	40	1.38
44601864--44601917	19	2.8	20	75	10	60	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44610040--44610102	30	2.1	31	85	14	87	46	19	14	20	1.84
44610164--44610189	13	2.0	13	100	0	52	30	7	30	30	1.85
44620272--44620331	32	1.9	32	83	10	79	28	8	11	51	1.67
44626399--44626447	22	2.2	22	89	7	73	10	22	22	44	1.82
44630131--44630155	13	1.9	13	100	0	50	52	0	0	48	1.00
44631628--44631661	15	2.3	15	89	0	50	5	26	2	64	1.30
44634194--44634244	24	2.1	24	82	10	59	35	1	0	62	1.06
44634206--44634372	58	2.8	59	82	9	205	44	1	1	52	1.19
44636443--44636502	30	2.0	30	100	0	120	30	3	23	43	1.70
44640275--44640304	15	2.0	15	93	0	51	16	16	13	53	1.73
44641026--44641554	58	8.9	58	73	15	390	24	16	14	44	1.85
44640988--44641555	120	4.8	117	76	12	452	24	16	14	44	1.86
44643421--44643471	23	2.3	23	86	6	70	62	3	7	25	1.40
44643545--44643681	54	2.6	52	79	10	143	55	4	5	34	1.44
44643636--44643681	19	2.5	18	83	16	51	60	4	6	28	1.40
44643793--44643842	18	2.8	17	76	8	55	72	0	2	26	0.96
44644894--44645431	94	5.8	93	88	5	806	48	4	5	42	1.45
44644894--44645459	178	3.0	181	88	6	780	48	4	5	42	1.44
44645166--44645431	95	2.8	94	94	0	451	49	4	5	40	1.44
44645282--44645433	52	3.1	49	68	16	136	50	5	4	39	1.45
44645443--44645480	11	3.5	11	85	7	51	44	0	5	50	1.24
44645572--44645611	17	2.4	16	87	4	53	42	7	0	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44648748--44648806	29	1.9	31	83	10	77	52	5	5	37	1.46
44649428--44649664	59	4.0	58	79	9	246	41	16	18	24	1.90
44649447--44649664	122	1.8	117	85	10	307	44	15	16	24	1.86
44649439--44649691	59	4.2	59	77	13	225	41	16	18	24	1.90
44649698--44649868	93	1.8	94	82	6	222	43	11	14	30	1.80
44649804--44649935	60	2.3	57	80	10	142	38	15	21	24	1.92
44650492--44650533	22	2.0	22	85	4	59	38	11	7	42	1.69
44651885--44652272	141	2.8	135	77	8	354	51	10	12	25	1.71
44651991--44652248	141	1.8	141	86	0	372	50	10	12	25	1.72
44652009--44652319	141	2.2	140	78	6	306	54	10	9	25	1.65
44653059--44653116	25	2.3	26	93	3	100	56	8	0	34	1.30
44656004--44656124	23	5.2	23	84	11	165	11	24	23	40	1.88
44656004--44656124	48	2.6	46	88	7	181	11	24	23	40	1.88
44656089--44656163	39	1.9	39	91	0	123	12	22	21	44	1.85
44656123--44656216	23	4.0	23	76	16	95	11	26	19	42	1.85
44670942--44671087	58	2.5	58	82	11	183	46	2	1	50	1.21
44671171--44671275	46	2.5	44	82	13	114	37	25	5	31	1.80
44671182--44671275	44	2.1	44	86	7	127	37	26	5	30	1.79
44671257--44671312	16	3.5	16	92	7	96	26	30	5	37	1.79
44675245--44675463	105	2.1	105	80	5	237	29	26	14	30	1.95
44677802--44677832	5	6.2	5	100	0	62	19	0	0	80	0.71
44678146--44678251	37	2.9	37	77	5	115	16	23	26	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44678131--44678294	74	2.2	75	80	3	179	18	21	28	32	1.96
44680716--44680747	14	2.4	14	90	10	50	43	0	3	53	1.16
44681503--44681541	3	13.0	3	100	0	78	33	0	33	33	1.58
44683828--44683869	19	2.2	19	83	8	50	7	4	7	80	1.00
44696815--44696861	21	2.2	21	92	0	76	25	17	36	21	1.94
44696962--44696997	12	3.0	12	91	0	54	0	55	0	44	0.99
44698872--44698921	16	3.2	16	73	21	52	34	0	6	60	1.21
44699114--44699387	95	2.9	95	88	6	385	48	12	1	37	1.52
44699351--44699393	21	2.1	21	86	4	61	58	13	2	25	1.48
44699510--44699576	26	2.6	27	79	11	77	59	8	0	31	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171