genome.fa.s3.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  154  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46211266--46211343	33	2.4	33	84	0	102	30	19	30	19	1.96
46211396--46211472	31	2.5	30	89	4	109	32	14	29	23	1.94
46214377--46214417	21	1.9	22	90	5	66	21	9	12	56	1.65
46215930--46215962	7	4.9	7	85	7	50	18	0	0	81	0.68
46215932--46215963	13	2.5	13	94	0	55	18	0	0	81	0.70
46221527--46221589	28	2.2	28	80	5	74	57	1	1	39	1.18
46221925--46221954	15	2.0	15	100	0	60	60	0	0	40	0.97
46224697--46224863	30	5.6	30	78	2	156	31	11	18	38	1.86
46232026--46232117	20	4.5	21	78	10	84	36	23	22	16	1.94
46232027--46232117	7	13.4	7	73	6	62	36	24	23	16	1.94
46237374--46237410	5	7.6	5	88	11	51	37	0	0	62	0.96
46237371--46237415	15	3.2	14	82	17	58	37	0	0	62	0.96
46242944--46243018	35	2.2	34	85	2	96	22	16	26	34	1.95
46246134--46246161	1	28.0	1	100	0	56	100	0	0	0	0.00
46247347--46247390	8	5.5	8	94	0	70	72	0	0	27	0.85
46247338--46247390	24	2.2	25	86	3	72	71	0	0	28	0.86
46249119--46249153	17	2.1	16	89	5	52	42	0	0	57	0.99
46253933--46253972	18	2.3	16	84	16	53	20	5	0	75	0.99
46254273--46254317	23	2.0	24	86	8	67	37	6	2	53	1.40
46254677--46254722	13	3.5	13	84	3	56	52	0	8	39	1.33
46263753--46263858	55	1.9	55	88	0	158	31	15	20	33	1.93
46263753--46263841	26	3.3	26	74	9	88	28	15	21	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46263753--46263877	29	4.6	26	71	12	81	30	14	21	33	1.93
46267112--46267136	13	1.9	13	100	0	50	88	0	12	0	0.53
46269621--46269674	21	2.6	21	82	5	65	29	25	16	27	1.97
46276409--46276434	5	5.2	5	100	0	52	80	0	19	0	0.71
46278855--46278902	22	2.2	22	96	3	89	35	8	25	31	1.85
46287896--46287922	14	1.9	14	100	0	54	40	0	22	37	1.54
46292471--46292630	58	2.8	56	83	12	184	45	0	1	52	1.13
46292801--46292856	16	3.5	16	87	4	78	26	30	5	37	1.79
46292947--46292991	22	2.0	22	91	8	74	6	4	24	64	1.37
46293018--46293061	23	1.9	23	100	0	88	20	6	13	59	1.57
46294440--46294466	2	13.5	2	100	0	54	48	0	0	51	1.00
46296780--46296810	3	10.3	3	100	0	62	64	0	0	35	0.94
46302517--46302555	18	2.2	18	85	0	51	56	0	5	38	1.22
46303534--46303572	20	2.0	20	89	0	60	28	23	23	25	1.99
46305702--46305732	16	1.9	16	93	0	53	51	0	16	32	1.44
46305908--46306044	61	2.2	63	89	2	206	52	2	0	43	1.21
46305909--46305994	16	5.6	16	68	13	54	52	1	1	45	1.16
46305908--46306058	62	2.5	62	86	3	189	51	2	0	45	1.20
46306044--46306155	26	4.2	24	74	19	98	45	2	0	51	1.15
46306038--46306157	40	3.0	40	74	8	118	45	2	0	52	1.14
46311572--46311654	38	2.2	38	97	0	157	27	24	6	42	1.78
46315487--46316054	41	13.8	41	80	4	495	23	25	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46317625--46317657	6	5.5	6	96	0	57	15	45	36	3	1.61
46320513--46321525	18	58.3	18	63	19	169	46	2	5	45	1.38
46320642--46320713	30	2.4	30	86	6	92	48	1	1	48	1.18
46320774--46321561	49	15.8	49	78	11	701	47	1	5	44	1.38
46320837--46321062	31	6.7	35	69	15	127	49	0	4	45	1.25
46320872--46321582	258	2.8	247	90	6	1070	47	2	5	45	1.37
46320637--46321320	344	2.0	342	93	1	1172	47	1	5	45	1.36
46320980--46321573	97	5.8	98	78	11	577	47	2	5	45	1.39
46321466--46321524	30	1.9	31	89	3	93	49	0	1	49	1.11
46326994--46327150	66	2.4	66	84	2	208	43	15	24	15	1.86
46327137--46327174	11	3.5	11	80	20	53	28	23	47	0	1.52
46327136--46327188	21	2.5	21	93	0	88	32	20	47	0	1.51
46327489--46327602	43	2.7	43	88	2	176	25	26	30	17	1.97
46333110--46333187	27	2.9	27	88	0	120	35	14	23	26	1.93
46333564--46333754	41	4.7	40	74	5	134	34	16	26	23	1.95
46334369--46334433	25	2.6	25	79	11	71	60	1	6	32	1.31
46334808--46334853	21	2.2	21	84	7	58	65	6	4	23	1.35
46335133--46335191	18	3.0	20	79	16	77	30	20	32	16	1.95
46336132--46336167	18	1.9	19	88	5	56	52	0	8	38	1.32
46337378--46337559	34	5.1	34	70	16	129	50	9	0	39	1.39
46337518--46337728	56	4.0	50	84	7	183	45	7	1	45	1.43
46337644--46337788	18	8.5	17	65	20	72	45	4	0	49	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46337655--46337685	8	3.9	8	91	0	53	38	0	3	58	1.15
46337549--46337728	56	3.3	56	88	5	246	44	7	1	46	1.42
46337728--46337804	41	2.0	40	87	7	113	49	5	0	45	1.24
46337708--46337796	30	2.8	31	73	12	83	48	2	0	49	1.13
46342459--46342773	43	7.3	43	76	5	251	27	11	24	36	1.90
46342486--46342773	86	3.3	86	80	1	301	28	11	23	37	1.89
46342460--46342773	129	2.4	129	79	4	346	28	11	24	36	1.90
46346192--46346302	12	9.5	12	71	5	84	69	16	3	10	1.31
46346185--46346439	24	11.2	24	66	15	71	67	17	3	11	1.34
46346218--46346273	27	2.1	27	83	6	69	69	16	3	10	1.30
46346204--46346312	36	3.1	36	82	3	134	68	14	4	11	1.35
46346172--46346412	33	7.2	32	69	15	114	67	18	2	11	1.34
46346171--46346412	65	3.6	65	73	14	177	67	18	2	11	1.34
46346326--46346438	44	2.6	43	77	5	120	68	16	2	12	1.32
46347531--46347562	16	1.9	17	93	6	57	50	3	0	46	1.17
46348220--46348274	27	2.0	27	82	3	65	32	0	14	52	1.42
46352369--46352413	15	3.0	15	96	0	81	33	15	6	44	1.73
46359137--46359164	3	9.3	3	100	0	56	32	0	0	67	0.91
46361452--46361594	60	2.4	60	74	9	148	41	6	12	39	1.70
46361796--46361837	15	2.7	15	85	3	57	64	0	0	35	0.94
46364170--46364211	16	2.7	16	77	3	50	26	11	26	35	1.91
46367623--46367827	91	2.3	90	83	6	254	34	21	11	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46369099--46369283	91	2.0	93	89	6	286	25	18	18	37	1.94
46369523--46369715	50	3.8	50	80	3	199	39	13	13	33	1.84
46371054--46371129	17	4.5	17	75	3	73	42	1	5	51	1.33
46373067--46373151	30	2.8	29	81	12	91	43	20	2	34	1.64
46373137--46373237	29	3.5	28	74	20	93	32	23	3	39	1.73
46373135--46373258	59	2.1	59	89	8	191	33	25	4	37	1.75
46373164--46373257	29	3.2	30	70	24	83	31	26	4	37	1.76
46373255--46373325	28	2.5	28	78	10	83	33	23	2	39	1.70
46373135--46373296	59	2.8	59	85	6	179	32	25	3	38	1.74
46375992--46376096	6	17.7	6	70	12	74	43	4	2	48	1.38
46375987--46376089	17	5.8	17	79	8	91	42	4	2	49	1.39
46377983--46378063	29	2.7	30	86	5	103	37	19	6	37	1.77
46378012--46378124	29	3.8	30	77	8	115	36	27	2	33	1.71
46378141--46378201	28	2.1	29	87	3	88	32	26	11	29	1.91
46378080--46378202	29	4.2	29	70	13	90	32	26	7	34	1.84
46390984--46391014	7	4.4	7	91	0	53	12	29	25	32	1.93
46391467--46391511	22	2.1	21	83	4	54	82	2	0	15	0.77
46391499--46391570	28	2.5	28	86	6	92	62	0	1	36	1.04
46391530--46391628	51	1.9	51	84	13	132	65	1	2	31	1.10
46391804--46392027	9	23.9	9	72	17	113	31	4	0	62	1.19
46391809--46391965	28	5.4	29	62	24	55	29	6	0	63	1.24
46391954--46392007	19	2.8	19	75	13	56	33	1	0	64	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46392335--46392397	31	2.0	32	81	9	76	30	7	7	53	1.58
46396183--46396241	30	2.0	31	83	6	77	32	11	6	49	1.66
46396269--46396298	16	1.9	16	93	6	53	63	3	0	33	1.11
46397595--46397697	37	2.7	38	72	6	91	23	19	26	31	1.98
46409904--46409961	30	1.9	31	86	10	84	20	3	13	62	1.46
46410801--46410852	26	2.0	26	88	0	77	51	9	1	36	1.46
46416850--46417040	104	1.8	104	88	2	294	31	26	13	28	1.93
46419589--46419631	21	2.1	20	86	4	59	4	0	18	76	0.95
46421798--46421839	2	22.5	2	86	13	63	52	0	0	47	1.00
46422102--46422141	17	2.4	17	87	4	55	52	0	17	30	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171