genome.fa.s3.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  112  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35827208--35827265	20	2.9	20	86	0	80	24	17	5	53	1.64
35838045--35838094	18	2.7	18	79	11	57	38	10	8	44	1.68
35838302--35838330	15	1.9	15	100	0	58	20	0	13	65	1.26
35838382--35838428	18	2.8	16	81	12	58	72	4	0	23	1.02
35838601--35838812	30	7.1	29	78	4	181	35	5	21	37	1.76
35838601--35838812	89	2.4	90	86	4	286	35	5	21	37	1.76
35839764--35839815	17	3.1	17	81	8	52	23	1	3	71	1.13
35839776--35839818	10	4.1	10	79	8	50	23	2	2	72	1.08
35839817--35839855	20	2.0	19	90	5	60	79	0	0	20	0.73
35839817--35839855	19	2.0	20	85	14	55	79	0	0	20	0.73
35840701--35840837	40	3.5	40	75	5	134	25	11	29	32	1.91
35852766--35852883	30	3.9	30	81	1	146	33	7	22	37	1.82
35852779--35852904	60	2.1	60	80	2	137	33	7	20	38	1.80
35853828--35853876	15	3.2	15	85	8	55	22	0	6	71	1.08
35853840--35853882	10	4.1	10	87	3	50	23	0	4	72	1.04
35858429--35858780	80	4.4	80	82	5	419	22	17	25	34	1.96
35858818--35858972	82	1.9	82	86	5	224	24	18	23	33	1.97
35886787--35887313	276	1.9	275	93	1	903	27	19	14	37	1.91
35894113--35894139	13	2.1	13	100	0	54	59	0	0	40	0.98
35894116--35894169	17	3.4	17	70	19	53	64	0	1	33	1.04
35895249--35895677	30	14.5	30	77	9	337	34	24	3	37	1.71
35895249--35895677	60	7.3	59	80	5	411	34	24	3	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35895249--35895675	118	3.6	117	80	5	427	34	24	2	38	1.70
35910782--35910832	23	2.3	22	80	9	59	50	23	1	23	1.59
35911450--35911550	20	5.1	20	76	2	78	27	20	33	17	1.96
35911460--35911514	19	2.8	19	80	5	65	25	16	32	25	1.96
35913957--35914027	20	3.4	20	84	5	79	47	2	0	49	1.16
35914653--35914705	25	2.0	26	82	7	63	45	0	1	52	1.11
35914646--35914712	19	3.3	18	69	26	53	47	0	1	50	1.10
35915999--35916057	26	2.3	26	93	0	100	28	11	25	33	1.91
35916601--35916664	30	2.2	28	83	13	76	20	4	3	71	1.17
35917525--35917581	22	2.7	20	70	21	53	36	1	1	59	1.18
35923799--35923874	27	2.8	27	67	0	71	38	36	13	11	1.81
35925286--35925387	50	2.0	49	83	10	127	45	5	17	31	1.72
35925896--35925950	19	2.7	19	81	18	67	49	0	5	45	1.25
35925968--35926009	20	2.3	17	88	12	57	52	0	0	47	1.00
35926493--35926518	11	2.4	11	100	0	52	53	23	7	15	1.67
35936298--35936338	9	4.6	9	100	0	82	58	0	0	41	0.98
35936298--35936354	3	19.3	3	75	10	55	63	0	0	36	0.95
35937962--35938034	22	3.2	22	79	12	85	69	0	26	4	1.06
35937965--35938029	11	5.7	12	81	15	84	67	0	27	4	1.10
35937962--35938034	24	3.2	23	84	9	96	69	0	26	4	1.06
35939337--35939508	61	2.8	59	77	13	161	27	9	10	52	1.66
35939337--35939509	60	2.8	62	76	11	187	27	9	10	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35939707--35939818	30	3.9	29	78	11	106	59	8	1	30	1.36
35939782--35939825	22	2.0	22	90	0	70	65	0	2	31	1.05
35941850--35941889	19	2.1	19	86	9	55	12	12	10	65	1.49
35947389--35947426	19	2.0	19	85	10	51	13	10	10	65	1.47
35952469--35952506	14	2.5	15	87	8	51	60	10	2	26	1.43
35952469--35952535	15	4.6	14	76	20	57	62	8	2	25	1.39
35957165--35957425	127	2.1	127	95	0	468	34	9	17	38	1.82
35959199--35959257	30	2.0	30	83	6	75	20	27	18	33	1.96
35977666--35977716	26	2.0	26	92	0	84	60	13	7	17	1.56
35977677--35977736	26	2.3	26	82	0	66	60	10	8	21	1.55
35979477--35979527	20	2.5	20	83	0	66	47	21	3	27	1.68
35982199--35982476	53	5.2	53	77	6	258	18	13	34	33	1.90
35982412--35982621	104	2.0	103	95	3	305	22	12	30	34	1.91
35991323--35991434	59	1.9	59	96	0	206	41	16	19	23	1.90
35995077--35995223	29	5.1	29	83	4	154	25	18	16	40	1.91
35997985--35998046	29	2.1	31	84	6	83	48	4	4	41	1.46
35998748--35998844	17	5.6	17	75	2	86	35	2	7	55	1.39
35998748--35998856	34	3.2	34	77	2	110	37	1	6	54	1.37
36000768--36000866	30	3.3	30	78	14	96	38	21	2	38	1.65
36000857--36001272	29	14.4	29	66	17	163	30	28	5	35	1.79
36000859--36001214	58	6.2	57	80	10	260	30	28	5	36	1.79
36008008--36008087	6	13.5	6	81	12	69	82	6	10	1	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36008037--36008077	15	2.7	15	84	0	55	85	9	2	2	0.78
36008976--36009306	50	6.7	49	73	8	233	41	20	24	13	1.88
36008972--36009331	100	3.6	100	77	8	288	42	20	25	12	1.87
36009330--36010150	92	8.9	92	93	1	1351	34	16	16	32	1.91
36009660--36010090	40	9.6	40	65	26	145	34	15	16	33	1.90
36010700--36010738	17	2.3	17	90	0	60	38	7	5	48	1.54
36010700--36010778	17	4.6	17	76	3	59	34	3	8	53	1.50
36010717--36010790	35	2.1	35	82	0	85	35	1	9	54	1.42
36010803--36010841	18	2.1	19	90	4	62	53	28	7	10	1.62
36012734--36012830	30	3.2	30	76	5	106	35	18	4	42	1.70
36012746--36012862	60	2.0	60	87	3	173	37	17	3	41	1.67
36012755--36012862	30	3.6	28	75	10	90	38	16	3	40	1.66
36012845--36013096	58	4.4	58	87	5	325	31	26	3	38	1.75
36012845--36013096	29	8.7	29	77	13	227	31	26	3	38	1.75
36014974--36015011	14	2.7	14	100	0	76	71	7	0	21	1.11
36022975--36023089	49	2.3	50	88	4	162	55	5	1	37	1.33
36027309--36027641	82	4.2	77	86	1	243	46	11	12	29	1.77
36027343--36027695	82	4.4	82	86	2	439	45	11	13	29	1.78
36028139--36028257	49	2.4	50	82	2	150	52	9	6	31	1.59
36031674--36031838	85	2.0	85	97	1	314	36	24	15	22	1.93
36032850--36032892	19	2.3	18	84	4	50	27	6	2	62	1.33
36036452--36036512	22	2.8	21	85	14	79	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36036445--36036511	27	2.4	29	85	5	84	74	1	0	23	0.90
36036452--36036512	24	2.8	22	87	9	81	75	0	0	24	0.80
36039316--36039387	21	3.4	21	79	7	74	30	12	27	29	1.93
36042192--36042347	50	3.1	50	75	11	156	35	14	11	37	1.83
36044984--36045137	50	3.1	49	79	10	152	36	12	14	36	1.84
36050007--36050079	21	3.5	21	83	7	94	30	13	27	28	1.94
36051125--36051196	24	2.9	24	70	4	63	16	4	8	70	1.27
36051276--36051318	13	3.2	13	83	9	52	20	0	6	72	1.08
36051341--36051381	16	2.6	15	84	7	55	21	0	2	75	0.92
36052892--36053071	58	3.1	58	88	6	242	48	5	18	26	1.70
36055033--36055138	47	2.3	47	76	0	113	45	21	14	18	1.85
36062825--36062853	13	2.2	13	100	0	58	0	13	0	86	0.58
36063605--36063644	21	1.9	21	85	10	55	0	27	10	62	1.27
36075130--36075169	21	1.9	21	89	0	62	42	17	15	25	1.88
36083606--36083653	24	2.0	24	91	0	78	20	16	18	43	1.88
36093065--36093153	36	2.5	36	100	0	178	38	21	15	24	1.92
36096260--36096299	18	2.3	18	86	4	55	52	10	17	20	1.72
36106109--36106149	14	3.0	14	89	3	57	31	19	7	41	1.79
36114365--36114459	32	3.0	32	96	0	172	37	20	11	30	1.88
36120990--36121084	32	3.0	32	95	0	163	38	20	10	30	1.86
36123538--36123567	14	2.2	14	94	5	53	30	20	10	40	1.85
36123787--36123910	36	3.4	36	92	0	203	36	24	10	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36123990--36124114	23	5.4	23	81	0	133	48	13	5	32	1.66
36130348--36130404	25	2.4	24	86	11	66	29	12	21	36	1.90
36130359--36130407	25	2.0	25	100	0	98	28	14	20	36	1.92
36132914--36132956	21	1.9	24	86	13	65	55	0	0	44	0.99
36139661--36139702	23	2.0	22	86	13	61	26	0	11	61	1.30
36139689--36139743	26	2.1	26	86	6	76	30	0	5	63	1.17
36144182--36144308	63	2.0	63	100	0	254	32	14	18	34	1.91
36170964--36171011	21	2.3	21	85	0	60	64	0	33	2	1.05
36171301--36171342	21	2.0	21	85	0	57	59	14	23	2	1.47
36171442--36171483	18	2.4	18	84	4	59	14	21	14	50	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171