genome.fa.s3.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  165  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48881954--48882018	17	4.1	15	81	15	78	43	0	3	53	1.16
48881958--48882021	31	2.1	31	91	5	103	43	0	3	53	1.16
48881950--48882057	42	2.6	41	80	7	110	48	0	1	49	1.18
48882223--48882278	15	3.9	14	80	20	62	21	55	10	12	1.67
48883956--48884238	30	9.4	30	85	3	381	38	24	3	33	1.73
48883956--48884245	91	3.2	90	86	3	404	37	25	3	33	1.73
48883956--48884304	60	5.8	59	83	5	357	37	26	3	33	1.72
48883956--48884306	91	3.9	88	80	9	354	37	25	3	33	1.73
48884226--48884860	59	10.7	59	87	1	880	31	27	4	36	1.78
48899462--48899487	12	2.2	12	100	0	52	34	19	15	30	1.93
48908147--48908833	343	2.0	341	86	2	950	34	15	16	33	1.91
48917196--48918224	342	3.0	342	91	1	1584	34	15	16	33	1.90
48920665--48920690	2	13.0	2	100	0	52	50	0	0	50	1.00
48922000--48922028	15	1.9	15	100	0	58	13	6	6	72	1.26
48932023--48932347	37	9.4	37	70	19	218	34	18	20	27	1.95
48932061--48932379	37	9.5	33	67	16	172	34	18	20	26	1.96
48932014--48932399	68	5.6	68	89	0	547	34	17	20	27	1.95
48932760--48932867	6	18.0	6	74	17	82	48	0	1	49	1.18
48932764--48932828	17	4.1	15	81	15	78	43	0	3	53	1.16
48932768--48932831	31	2.1	31	91	5	103	43	0	3	53	1.16
48932760--48932867	42	2.6	41	80	7	110	48	0	1	49	1.18
48933033--48933088	15	3.9	14	80	20	62	21	55	10	12	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48934757--48935043	30	9.5	30	81	1	342	36	23	3	35	1.73
48934762--48935050	90	3.2	90	86	2	391	37	24	3	35	1.72
48935031--48935545	59	8.7	59	89	0	780	31	27	4	35	1.78
48946094--48946155	30	2.1	30	81	6	72	46	3	1	48	1.28
48947622--48947654	15	2.3	15	89	5	50	60	0	0	39	0.97
48950723--48950792	29	2.4	29	80	2	77	50	14	7	28	1.69
48954059--48954118	28	2.1	28	87	6	86	26	13	30	30	1.94
48954104--48954267	30	5.6	29	68	17	88	35	6	28	29	1.81
48954143--48954353	29	7.2	28	67	19	92	36	2	27	33	1.72
48954100--48954415	59	5.4	59	86	2	395	35	4	28	31	1.76
48954100--48954368	117	2.3	118	88	0	396	34	4	29	31	1.76
48954188--48954353	29	5.7	29	72	22	123	34	2	29	33	1.71
48955463--48955501	15	2.4	16	87	8	53	43	7	0	48	1.31
48957408--48957452	18	2.4	18	88	3	63	40	2	11	46	1.52
48957426--48957483	30	1.9	31	85	3	82	46	5	5	43	1.48
48958839--48959006	61	2.8	60	79	9	191	25	7	10	57	1.58
48962354--48962394	20	2.0	20	85	0	55	46	0	9	43	1.36
48963142--48963191	17	3.0	17	75	13	50	58	0	2	40	1.10
48964627--48964668	21	2.0	21	86	9	59	45	2	4	47	1.36
48964742--48964785	22	2.0	22	83	16	56	43	6	9	40	1.63
48964742--48964784	21	2.0	22	82	13	54	44	6	9	39	1.64
48967465--48967505	16	2.7	16	79	20	52	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48971244--48971282	20	2.0	20	84	0	51	48	2	10	38	1.51
48975620--48975646	7	3.9	7	100	0	54	44	0	0	55	0.99
48976745--48976778	11	3.1	11	86	0	50	26	5	2	64	1.30
48980844--48980917	28	2.5	28	79	16	78	41	2	0	55	1.14
48981248--48981320	22	3.4	22	71	19	64	61	0	2	35	1.10
48984013--48984051	9	4.3	9	80	0	51	38	7	5	48	1.54
48987565--48987662	48	2.0	48	96	0	178	24	7	25	42	1.80
48989013--48989112	49	2.0	49	96	3	184	36	6	6	52	1.51
48989532--48989581	18	2.9	17	82	5	66	0	14	2	84	0.72
49001761--49001883	23	5.3	23	83	11	160	11	25	23	39	1.88
49001760--49001883	48	2.6	47	87	7	180	11	25	23	39	1.88
49001848--49001922	39	1.9	39	91	0	123	12	22	21	44	1.85
49007596--49007664	30	2.3	31	85	7	97	27	10	13	49	1.73
49008080--49008140	23	2.7	23	77	12	63	39	0	1	59	1.08
49008074--49008132	22	2.6	23	76	13	59	40	0	3	55	1.16
49008102--49008141	16	2.6	15	82	17	55	35	0	0	65	0.93
49010735--49011711	484	2.0	485	97	0	1830	29	15	14	40	1.86
49011762--49011852	30	3.0	29	80	12	103	67	0	1	31	0.98
49011765--49011852	10	8.7	10	71	17	58	68	0	1	30	0.97
49011809--49011869	30	2.0	30	87	0	86	67	3	1	27	1.16
49011795--49011912	30	4.2	30	64	24	76	63	3	2	30	1.24
49012285--49012311	14	1.9	14	100	0	54	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49013817--49013841	6	4.2	6	100	0	50	52	0	32	16	1.44
49016024--49016062	19	2.0	21	85	10	55	46	7	5	41	1.55
49042417--49042458	20	2.1	20	86	0	57	57	2	11	28	1.47
49043285--49043343	24	2.5	24	97	0	109	50	5	13	30	1.63
49045695--49045748	28	2.0	28	82	10	67	48	3	0	48	1.19
49052233--49052282	23	2.1	24	81	3	57	46	2	2	50	1.24
49054883--49054915	3	11.3	3	93	6	59	69	0	0	30	0.88
49056697--49057123	226	1.9	226	94	0	757	31	14	12	41	1.83
49059670--49059761	6	15.5	6	71	10	73	44	1	4	50	1.29
49059670--49059761	17	5.5	17	79	8	91	44	1	4	50	1.29
49059687--49059761	11	6.9	11	68	18	50	46	1	2	49	1.24
49061508--49061814	30	10.4	30	88	2	426	37	24	2	35	1.70
49061508--49061837	59	5.6	60	86	3	438	36	24	2	36	1.70
49061508--49061837	89	3.7	90	86	3	447	36	24	2	36	1.70
49061796--49061933	59	2.4	58	93	3	233	30	28	5	35	1.79
49061806--49061905	29	3.4	29	75	15	107	29	29	5	37	1.78
49061825--49061926	30	3.5	30	79	12	131	32	27	3	36	1.75
49061825--49061933	29	3.7	29	77	12	116	30	30	5	33	1.80
49061796--49061968	59	2.9	59	87	2	197	28	29	6	35	1.83
49073863--49074543	68	10.0	68	92	0	1123	36	18	18	26	1.94
49073863--49074543	271	2.5	272	91	0	1132	36	18	18	26	1.94
49074901--49074974	6	12.5	6	72	13	64	45	1	2	50	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49074901--49074974	17	4.6	16	76	10	71	45	1	2	50	1.24
49076741--49076993	30	8.5	30	94	0	427	37	26	2	33	1.71
49076741--49076993	89	2.8	90	92	1	436	37	26	2	33	1.71
49086791--49086836	25	1.9	25	86	8	69	32	4	6	56	1.45
49089969--49089995	2	13.5	2	100	0	54	51	0	0	48	1.00
49092721--49092754	17	1.9	18	88	5	52	50	0	11	38	1.39
49102548--49102587	18	2.2	18	90	0	62	30	15	7	47	1.72
49105806--49105856	19	2.5	19	87	9	66	31	3	0	64	1.11
49106798--49106858	7	8.7	7	75	13	63	21	29	22	26	1.99
49106796--49106846	21	2.4	21	90	0	75	23	27	21	27	1.99
49106914--49106957	21	2.1	21	83	8	54	25	11	27	36	1.90
49106929--49107087	7	22.7	7	67	16	55	27	5	28	38	1.77
49106969--49107081	14	8.1	14	69	13	63	27	3	28	40	1.73
49107029--49107076	21	2.3	22	82	10	64	29	2	27	41	1.67
49107156--49107270	54	2.1	54	100	0	230	28	17	16	37	1.92
49112295--49112364	29	2.4	28	81	13	79	25	7	20	47	1.75
49112516--49112591	40	1.9	40	94	0	134	35	17	10	36	1.84
49113397--49113433	17	2.2	17	86	13	51	64	0	5	29	1.15
49115592--49115628	3	12.3	3	100	0	74	67	0	0	32	0.91
49118242--49118314	32	2.2	32	85	7	103	27	4	5	63	1.35
49128787--49128862	32	2.3	33	86	6	111	26	3	6	63	1.37
49131279--49131356	31	2.6	30	86	8	104	25	8	5	60	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49131905--49131946	6	7.2	6	82	15	52	35	0	0	64	0.94
49132694--49132746	27	2.0	27	88	0	79	26	7	7	58	1.52
49132791--49132846	14	3.9	14	75	13	60	44	1	3	50	1.29
49139993--49140083	44	2.0	46	87	6	132	38	0	7	53	1.30
49140482--49140515	16	2.1	16	88	0	50	20	2	2	73	1.09
49148772--49148820	19	2.6	19	83	6	64	42	14	32	10	1.79
49149181--49149206	3	8.7	3	100	0	52	0	34	0	65	0.93
49149267--49149311	15	3.0	15	86	0	63	2	46	0	51	1.13
49149251--49149320	24	3.0	24	81	10	74	4	47	0	48	1.21
49149464--49149492	12	2.5	12	94	5	51	0	44	6	48	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171