genome.fa.s3.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  132  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41208643--41209155	61	8.6	60	81	6	494	39	15	16	29	1.88
41209162--41209343	59	3.1	59	77	4	179	36	17	17	28	1.92
41212602--41212632	16	2.0	16	93	6	55	77	3	6	12	1.08
41212736--41212792	20	2.7	22	78	15	66	28	1	3	66	1.18
41231663--41232591	76	12.2	76	94	0	1561	34	15	16	32	1.91
41232893--41232922	14	2.1	15	93	6	53	36	3	0	60	1.14
41234674--41235317	59	11.0	58	91	3	990	33	28	2	34	1.72
41234674--41235317	116	5.5	116	90	2	990	33	28	2	34	1.72
41234660--41235297	29	22.0	28	68	23	255	33	28	2	34	1.73
41235280--41235353	38	1.9	39	86	2	105	25	28	6	39	1.81
41235222--41235401	97	1.9	96	82	5	229	28	30	5	35	1.80
41237316--41237479	58	2.8	59	82	3	179	24	13	12	50	1.76
41237629--41237796	89	1.9	89	79	7	189	47	13	13	26	1.79
41243528--41243584	29	2.0	29	100	0	114	45	21	8	24	1.80
41245399--41245438	15	2.7	15	80	0	53	42	17	22	17	1.89
41247740--41247782	23	1.9	23	85	4	61	23	6	9	60	1.51
41261996--41262135	29	4.9	29	78	2	149	22	16	10	50	1.75
41261996--41262133	57	2.4	57	85	3	179	22	15	10	50	1.75
41262633--41263233	45	13.4	45	87	0	817	33	5	17	43	1.71
41262679--41262750	22	3.2	22	67	18	58	29	6	18	45	1.75
41263124--41263193	22	3.1	22	67	18	63	31	1	15	51	1.53
41263111--41263333	119	1.9	119	89	0	347	35	4	17	43	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41263156--41263307	74	2.1	74	89	0	232	34	5	17	42	1.73
41263231--41263350	45	2.6	45	92	1	186	35	5	16	42	1.70
41264502--41264550	21	2.3	21	96	0	89	16	32	16	34	1.91
41276175--41276271	50	1.9	50	89	0	149	39	2	7	51	1.41
41279005--41279060	28	2.0	27	93	3	94	33	21	21	23	1.97
41282410--41282781	30	12.6	29	84	3	402	37	2	25	34	1.68
41282378--41282781	89	4.5	89	83	6	462	37	2	25	35	1.68
41282425--41282748	118	2.7	118	88	1	479	37	1	25	36	1.64
41282410--41282799	59	6.6	59	79	8	400	37	2	25	34	1.70
41284773--41285411	39	16.4	39	68	10	268	26	20	30	23	1.98
41284778--41285099	156	2.1	155	84	0	410	26	18	30	24	1.98
41285073--41285450	78	4.8	78	79	7	304	26	20	29	22	1.99
41284895--41285271	194	1.9	195	80	5	433	26	19	30	23	1.98
41285090--41285450	156	2.3	156	83	0	436	27	20	30	22	1.98
41285307--41285493	39	4.8	39	80	11	195	28	22	27	20	1.99
41285145--41285493	78	4.5	77	80	6	244	27	21	29	21	1.99
41284761--41285486	117	6.2	115	71	13	376	26	20	30	22	1.99
41292940--41293131	58	3.3	58	82	7	221	31	5	25	37	1.78
41292940--41293101	28	5.6	27	70	12	90	32	4	25	37	1.77
41292940--41293131	30	6.6	29	72	12	144	31	5	25	37	1.78
41295356--41296065	205	3.5	206	87	3	940	22	22	19	35	1.96
41295356--41296065	206	3.5	205	86	2	943	22	22	19	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41296220--41296364	39	3.7	39	77	7	150	24	21	31	22	1.98
41296159--41296393	78	3.0	78	83	3	278	24	20	30	24	1.98
41296682--41297017	50	6.7	50	71	8	170	14	26	21	37	1.92
41296744--41297019	50	5.5	51	72	7	199	14	26	20	38	1.91
41296682--41296927	101	2.4	101	86	1	323	15	26	21	37	1.92
41298204--41298235	14	2.3	14	94	0	55	0	6	9	84	0.78
41303536--41303596	28	2.2	28	82	5	70	29	11	27	31	1.92
41303676--41303834	29	5.5	28	72	19	103	33	3	25	37	1.74
41303668--41303934	59	4.6	58	81	5	281	35	2	25	36	1.70
41303697--41303958	30	8.9	29	73	10	196	33	2	25	37	1.69
41305018--41305050	15	2.2	15	89	10	50	45	0	3	51	1.16
41305751--41305807	17	3.4	17	73	9	53	50	5	5	38	1.47
41306378--41306425	24	2.0	24	87	0	69	45	2	29	22	1.64
41309483--41309529	22	2.2	21	88	3	67	40	2	0	57	1.11
41311397--41311426	10	3.0	10	90	0	51	73	0	0	26	0.84
41312864--41312922	27	2.2	27	79	11	68	30	8	5	55	1.51
41313186--41313241	26	2.1	28	86	6	80	39	7	17	35	1.78
41314704--41314748	22	2.0	23	91	8	76	37	2	0	60	1.09
41314816--41314878	21	3.0	20	84	6	90	30	3	4	61	1.32
41318368--41318519	61	2.5	61	81	5	175	23	15	10	50	1.75
41318348--41318519	59	2.9	62	80	6	178	23	15	11	49	1.77
41319052--41319112	28	2.2	28	85	5	79	27	11	29	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41319062--41319174	28	4.0	28	70	16	79	39	6	25	28	1.80
41319089--41319198	57	1.9	58	81	5	134	43	4	21	30	1.73
41319216--41319382	29	5.7	30	84	6	191	34	2	25	36	1.72
41319224--41319413	59	3.2	58	78	9	197	35	4	23	36	1.75
41319220--41319416	29	6.7	28	77	9	171	35	4	24	36	1.75
41320495--41320538	14	3.1	14	83	9	54	43	0	4	52	1.22
41321385--41321441	28	2.0	28	89	0	87	56	1	1	40	1.20
41321385--41321421	11	3.2	12	88	7	51	59	0	0	40	0.97
41321367--41321439	17	4.3	17	77	8	69	54	2	2	39	1.29
41322250--41322294	19	2.4	19	81	7	56	40	0	2	57	1.11
41324692--41324741	21	2.4	21	82	0	55	44	16	14	26	1.85
41324703--41324742	21	1.9	21	89	0	62	42	15	17	25	1.88
41325911--41325960	6	8.3	6	79	16	59	18	0	0	82	0.68
41325911--41325960	8	6.0	8	79	6	55	18	0	0	82	0.68
41325914--41325959	20	2.2	20	85	11	58	17	0	0	82	0.67
41327386--41327430	19	2.4	19	81	7	56	40	0	2	57	1.11
41327430--41327459	14	2.1	14	93	0	51	16	6	3	73	1.18
41334588--41334626	16	2.4	16	86	4	51	38	10	0	51	1.36
41334596--41334626	16	1.9	16	93	0	53	38	12	0	48	1.42
41347026--41347063	16	2.4	16	90	0	58	44	0	55	0	0.99
41356606--41356644	17	2.3	17	86	0	51	61	2	7	28	1.37
41357630--41357684	20	2.8	20	88	0	65	38	21	25	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41357643--41357689	20	2.3	20	92	0	76	38	27	23	10	1.88
41359991--41360046	24	2.2	25	81	6	69	51	8	16	23	1.72
41368221--41368262	17	2.4	18	88	7	61	33	0	2	64	1.07
41368285--41368357	20	3.7	19	73	14	58	30	5	2	61	1.32
41368229--41368329	10	10.4	10	66	19	54	29	3	2	63	1.27
41368460--41368504	18	2.5	18	89	7	65	26	4	2	66	1.22
41369842--41370002	87	1.8	88	82	5	209	35	18	8	37	1.82
41370075--41370119	20	2.2	20	84	7	56	64	0	2	33	1.06
41370084--41370164	29	2.8	29	75	7	76	66	3	0	29	1.09
41370104--41370186	39	2.2	38	82	8	105	63	4	1	30	1.22
41370376--41370503	10	13.4	9	67	26	52	32	6	2	59	1.35
41370408--41370490	28	2.9	27	76	18	87	28	7	1	62	1.29
41370636--41370829	88	2.2	88	83	7	243	36	9	13	41	1.76
41372412--41372453	21	2.0	21	95	0	75	26	11	9	52	1.68
41373552--41373627	29	2.6	31	77	14	97	30	13	11	44	1.79
41380415--41380471	6	9.5	6	74	14	55	14	0	15	70	1.18
41380425--41380465	20	2.0	20	90	0	64	12	0	17	70	1.16
41381271--41381307	18	2.1	18	89	0	56	29	21	21	27	1.99
41382233--41382281	15	2.9	17	73	26	50	40	6	2	51	1.38
41382362--41382403	22	1.9	22	90	0	66	64	2	0	33	1.07
41382783--41382845	21	3.0	21	77	9	67	61	6	0	31	1.21
41386623--41386767	75	1.9	75	85	9	199	40	1	8	49	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41389052--41389083	15	2.1	16	94	5	57	84	9	0	6	0.78
41389709--41389961	30	8.5	29	84	8	248	36	22	4	36	1.75
41389709--41389948	90	2.7	89	83	3	288	37	22	4	35	1.75
41391250--41391302	18	2.9	17	76	13	52	41	0	3	54	1.18
41391767--41391945	43	4.3	43	80	9	192	22	30	20	27	1.98
41392014--41392042	15	1.9	15	100	0	58	48	34	3	13	1.60
41392264--41392417	66	2.3	66	88	0	227	14	24	18	43	1.86
41394853--41394897	20	2.2	20	96	0	81	40	15	26	17	1.90
41397774--41397840	33	2.1	33	97	2	127	41	8	5	43	1.60
41397862--41397927	8	8.8	8	71	18	61	56	0	3	40	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171