genome.fa.s3.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  76  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26220591--26220650	2	31.0	2	91	6	97	48	0	0	51	1.00
26220951--26220998	23	2.1	22	84	3	60	35	2	0	62	1.07
26220989--26221035	22	2.2	20	88	7	67	25	2	4	68	1.19
26221057--26221090	18	1.9	17	88	5	50	35	2	0	61	1.11
26221662--26221698	12	3.2	12	88	11	51	18	0	2	78	0.87
26221758--26221790	2	16.5	2	100	0	66	51	0	0	48	1.00
26222362--26222465	55	1.9	52	84	9	138	29	9	6	53	1.59
26231074--26231546	244	2.0	242	86	2	664	36	6	18	37	1.78
26232386--26232418	16	2.1	16	88	5	50	18	15	0	66	1.25
26238902--26238954	15	3.3	15	73	14	52	45	0	1	52	1.11
26248756--26248837	33	2.6	31	90	3	119	26	14	10	47	1.77
26248697--26248892	93	2.1	91	83	6	245	25	15	12	46	1.80
26249051--26249194	28	4.9	28	73	15	121	50	9	14	25	1.74
26249051--26249218	59	2.8	58	84	3	219	50	10	14	25	1.73
26249065--26249218	31	5.2	29	70	16	93	50	11	14	24	1.75
26249169--26249214	24	1.9	24	82	8	58	58	6	8	26	1.52
26254699--26254738	19	2.0	20	85	4	55	37	2	10	50	1.50
26258975--26259049	31	2.5	30	82	10	82	48	4	4	44	1.40
26261502--26261561	27	2.3	25	83	11	68	21	6	3	68	1.28
26271650--26271863	106	2.0	106	98	0	410	38	17	18	26	1.92
26272677--26272722	22	2.1	22	87	0	65	36	26	0	36	1.57
26293847--26293876	2	15.0	2	100	0	60	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26294810--26294926	62	1.9	60	82	3	144	48	5	9	36	1.58
26297225--26297349	12	10.8	12	70	12	84	7	4	18	70	1.26
26297213--26297306	24	4.0	22	82	6	89	8	3	15	72	1.22
26297287--26297343	22	2.4	25	83	13	77	8	1	17	71	1.19
26297231--26297344	55	2.1	55	85	8	151	7	3	18	71	1.24
26297475--26297524	11	4.5	11	80	5	64	20	0	8	72	1.10
26297476--26297534	22	2.7	22	77	12	59	22	0	10	67	1.20
26299207--26299265	29	2.0	30	93	3	102	30	3	13	52	1.57
26299211--26299274	29	2.2	29	86	8	85	32	4	10	51	1.58
26299407--26299488	31	2.7	30	77	17	89	41	14	10	32	1.81
26327109--26327152	20	2.2	20	91	0	70	59	9	0	31	1.29
26327182--26327230	10	5.1	10	85	9	66	65	2	0	32	1.04
26327186--26327230	9	4.8	9	86	8	56	66	2	0	31	1.04
26327182--26327230	19	2.6	19	90	6	73	65	2	0	32	1.04
26327848--26327952	6	18.0	6	70	13	67	45	2	1	49	1.27
26327824--26327916	24	3.7	24	74	19	73	40	3	2	53	1.29
26327836--26327923	41	2.1	41	82	0	104	42	3	2	52	1.31
26327848--26327892	17	2.6	18	85	3	65	42	4	0	53	1.21
26327883--26327949	35	1.9	35	84	6	91	44	1	2	50	1.26
26327848--26327931	41	2.0	42	88	2	125	41	3	2	52	1.31
26327867--26327951	17	4.9	17	76	9	73	45	2	2	49	1.27
26329742--26329961	29	7.5	28	69	25	136	35	27	0	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26329741--26330053	59	5.3	59	90	2	436	33	28	2	35	1.70
26329771--26330055	29	9.7	29	70	22	132	32	29	2	35	1.72
26334550--26334592	17	2.4	18	84	3	52	32	2	20	44	1.65
26335873--26335901	2	14.5	2	100	0	58	51	0	0	48	1.00
26338506--26338543	17	2.3	16	90	4	58	7	0	31	60	1.25
26338564--26338612	18	2.8	17	75	6	53	18	2	24	55	1.53
26341401--26341443	21	2.0	22	82	13	54	39	2	25	32	1.69
26344801--26344853	27	1.9	28	88	3	81	49	11	15	24	1.77
26346431--26346555	28	4.5	28	83	6	155	17	24	17	40	1.90
26346403--26346527	55	2.3	54	81	5	142	20	21	16	42	1.89
26346431--26346555	55	2.2	56	85	2	171	17	24	17	40	1.90
26346618--26346652	18	1.9	18	88	11	54	68	8	0	22	1.16
26357104--26357156	20	2.6	20	78	3	52	67	0	32	0	0.91
26359843--26359906	31	2.1	31	96	0	119	17	31	9	42	1.81
26360966--26361004	20	2.0	20	85	5	53	48	0	15	35	1.45
26361536--26361598	23	2.6	25	80	12	85	14	23	20	41	1.89
26361549--26361638	23	3.9	23	85	0	117	13	21	21	44	1.85
26366433--26366484	18	2.8	20	82	14	74	46	5	5	42	1.51
26367598--26367641	18	2.4	18	92	0	70	43	13	11	31	1.80
26367598--26367641	9	4.9	9	81	10	54	43	13	11	31	1.80
26367722--26367760	20	2.0	20	89	0	60	53	10	0	35	1.35
26374534--26374568	17	2.1	17	88	0	52	45	25	11	17	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26376265--26376306	15	2.7	16	81	3	50	61	2	0	35	1.09
26376590--26376629	17	2.4	17	80	16	55	17	12	17	52	1.74
26377291--26377544	29	8.7	28	67	24	125	32	27	3	36	1.73
26377288--26377546	59	4.4	59	87	0	358	32	28	3	35	1.74
26377288--26377544	117	2.2	117	87	2	372	32	28	3	36	1.73
26377288--26377580	117	2.5	117	83	2	363	31	27	4	36	1.78
26377288--26377580	59	5.0	58	82	3	327	31	27	4	36	1.78
26383279--26383452	23	7.5	23	75	10	88	11	22	21	44	1.84
26387121--26387213	46	2.0	46	91	0	150	34	29	11	24	1.91
26388355--26388482	39	3.3	39	83	4	159	20	15	20	43	1.87
26392955--26392995	19	2.2	19	91	4	66	36	0	4	58	1.20
26392946--26393007	19	3.2	19	69	4	52	32	0	4	62	1.16
26394636--26394685	23	2.2	23	96	0	91	22	26	22	30	1.99
26395682--26395752	31	2.4	29	88	4	97	39	4	0	56	1.19
26395680--26395750	11	6.5	11	73	15	58	39	4	0	56	1.19
26395729--26395763	17	2.1	17	88	0	52	48	0	0	51	1.00
26395796--26395894	29	3.5	29	95	2	168	47	24	13	15	1.80
26396508--26396546	13	3.1	13	92	3	62	46	0	10	43	1.37
26396822--26396865	20	2.3	19	88	4	61	79	2	15	2	0.93
26396820--26396863	22	2.0	22	82	13	54	79	2	15	2	0.93
26396884--26396913	11	2.7	11	89	0	51	10	23	56	10	1.62
26397537--26397592	30	1.9	28	85	7	76	35	33	1	28	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26397551--26397886	30	11.5	28	70	20	197	32	28	3	35	1.74
26397548--26397916	59	6.3	59	90	0	544	31	28	3	35	1.74
26397548--26397961	118	3.5	116	85	6	480	30	29	5	34	1.79
26410024--26410662	69	9.3	69	94	2	1101	32	17	21	28	1.96
26410973--26411043	31	2.4	29	88	4	97	39	4	0	56	1.19
26410971--26411041	11	6.5	11	73	15	58	39	4	0	56	1.19
26411020--26411054	17	2.1	17	88	0	52	45	2	0	51	1.16
26411087--26411177	27	3.3	27	93	4	155	48	24	12	15	1.79
26411802--26411833	13	2.5	13	95	5	57	46	0	9	43	1.35
26412097--26412140	20	2.3	19	92	4	70	79	0	15	4	0.89
26412815--26413070	29	8.8	29	69	26	143	31	29	3	34	1.76
26412817--26413109	58	5.0	59	86	3	378	30	29	5	34	1.80
26412817--26413072	117	2.2	116	88	3	381	31	29	4	34	1.77
26419961--26420010	23	2.2	23	85	7	66	68	22	4	6	1.29
26420006--26420071	32	2.0	34	88	5	100	65	22	6	6	1.38
26433432--26433481	21	2.5	20	87	6	73	50	14	14	22	1.77
26433449--26433497	26	2.0	24	84	8	62	51	12	12	24	1.73
26436663--26436871	69	3.1	69	89	1	314	36	22	19	20	1.95
26440692--26440733	22	1.9	22	90	0	66	50	7	7	35	1.57
26441325--26441394	29	2.4	29	92	2	113	25	4	7	62	1.39
26442532--26442565	16	2.1	16	88	5	50	55	0	23	20	1.43
26443828--26443902	36	2.1	36	97	0	141	33	9	33	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26445300--26445399	47	2.1	47	83	5	123	34	17	23	26	1.96
26445862--26446139	39	6.8	39	76	12	166	23	16	20	38	1.92
26451470--26451755	52	5.5	52	85	5	357	27	14	22	35	1.93
26451470--26451755	103	2.8	103	89	0	428	27	14	22	35	1.93
26453096--26453392	39	7.7	39	78	6	230	25	18	17	37	1.93
26453096--26453394	78	3.9	77	77	9	256	25	18	17	38	1.93
26453218--26453285	34	2.0	34	91	0	109	27	20	17	33	1.95
26453478--26453615	74	1.9	74	83	3	179	23	27	18	30	1.97
26455257--26455461	109	1.9	108	81	10	249	41	13	11	33	1.80
26455670--26455736	24	2.8	24	86	4	82	32	11	5	49	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171