genome.fa.s3.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  136  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42189241--42189311	20	3.5	19	81	14	81	25	1	26	46	1.61
42189241--42189388	14	10.9	13	68	11	75	23	2	28	45	1.64
42189248--42189388	27	5.2	26	70	8	86	22	2	29	46	1.64
42189241--42189407	14	12.2	14	68	9	67	23	1	28	45	1.63
42189351--42189413	20	3.0	21	71	13	67	25	3	30	41	1.71
42189356--42189413	21	2.8	20	78	12	73	24	3	32	39	1.72
42191039--42191089	21	2.5	21	87	3	68	21	17	19	41	1.91
42191078--42191126	20	2.5	19	83	3	62	24	18	14	42	1.87
42201918--42201984	34	2.0	34	100	0	134	10	32	0	56	1.33
42203393--42203668	140	2.0	140	80	2	313	28	18	19	32	1.96
42207754--42207787	17	1.9	18	88	5	52	44	0	5	50	1.26
42209344--42209383	14	2.8	15	77	14	57	10	15	15	60	1.60
42217125--42217149	10	2.5	10	100	0	50	60	0	8	32	1.26
42223831--42223855	3	8.3	3	100	0	50	68	0	0	32	0.90
42227916--42227976	20	3.1	20	77	11	63	36	21	9	32	1.86
42230248--42230295	22	2.1	23	92	3	80	12	25	22	39	1.89
42230248--42230307	22	2.7	22	87	7	68	11	25	20	43	1.85
42234697--42234735	16	2.5	15	80	8	51	35	0	0	64	0.94
42235331--42235540	116	1.8	116	85	4	300	35	22	11	30	1.90
42237651--42237686	18	2.1	18	89	5	56	47	0	19	33	1.50
42238626--42238680	2	27.0	2	96	3	101	49	1	0	49	1.11
42240842--42240866	13	1.9	13	100	0	50	56	16	0	28	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42241039--42241161	6	20.5	6	66	24	64	47	0	8	43	1.32
42241030--42241161	54	2.4	54	100	0	264	48	0	9	42	1.35
42241036--42241265	11	20.7	11	66	12	78	48	0	8	42	1.39
42241185--42241265	24	3.4	24	79	5	76	44	0	8	46	1.34
42241226--42241318	27	3.4	28	84	8	84	47	0	13	38	1.44
42241229--42241337	22	4.4	23	74	16	60	46	0	13	39	1.44
42241246--42241320	27	2.7	27	83	6	89	49	0	14	36	1.44
42248348--42248386	17	2.3	17	86	0	51	28	0	7	64	1.21
42253550--42253580	3	10.3	3	92	0	53	70	0	29	0	0.87
42256165--42256220	21	2.7	21	77	0	58	14	19	21	44	1.86
42258058--42258383	29	11.1	30	71	12	180	35	27	3	32	1.75
42258068--42258381	88	3.6	86	74	13	250	36	26	4	33	1.76
42258068--42258261	58	3.3	56	82	8	228	38	26	2	32	1.68
42258068--42258381	58	5.4	58	77	11	207	36	26	4	33	1.76
42258217--42258405	29	6.5	28	72	10	87	34	25	5	33	1.80
42258926--42258962	2	18.5	2	100	0	74	51	0	0	48	1.00
42262076--42262121	15	2.8	17	80	12	60	71	2	4	21	1.14
42262111--42262148	18	2.1	18	90	0	58	73	0	7	18	1.06
42262069--42262129	5	11.8	5	77	16	54	72	3	4	19	1.18
42264774--42264847	32	2.4	32	86	4	98	41	4	2	51	1.35
42268400--42268459	29	2.1	29	87	0	84	31	6	11	50	1.65
42270550--42270574	13	1.9	13	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42271584--42271663	42	1.9	43	82	10	103	47	17	2	32	1.61
42272257--42272281	6	4.2	6	100	0	50	48	0	36	16	1.46
42273284--42273308	2	12.5	2	100	0	50	52	0	0	48	1.00
42284419--42284480	32	2.0	32	87	9	92	45	3	1	50	1.27
42285011--42285112	40	2.5	41	85	3	136	31	22	16	29	1.96
42285098--42285128	16	1.9	16	100	0	62	22	19	19	38	1.93
42286281--42286350	35	2.0	35	97	0	131	37	15	11	35	1.84
42298460--42298497	18	2.2	17	86	13	51	42	0	0	57	0.98
42298576--42298628	18	2.9	19	81	13	67	62	1	0	35	1.06
42299780--42299978	67	2.9	69	80	7	230	36	3	9	51	1.49
42299780--42299982	23	9.0	23	77	3	173	36	2	9	51	1.50
42300016--42300129	10	10.2	11	68	18	58	35	2	21	41	1.67
42299975--42300080	49	2.2	47	86	6	142	37	4	19	37	1.73
42300039--42300130	34	2.8	34	80	9	102	34	4	20	40	1.73
42300071--42300135	34	1.9	34	93	0	112	30	3	23	43	1.69
42301469--42301508	20	2.0	21	90	5	64	20	30	27	22	1.98
42301534--42301586	20	2.6	20	85	8	63	15	24	22	37	1.92
42301553--42301590	20	1.9	20	100	0	76	10	23	26	39	1.87
42302643--42302678	3	12.3	3	88	5	56	27	0	2	69	1.02
42308100--42308134	10	3.7	10	85	14	56	0	20	0	80	0.72
42308599--42308644	21	2.1	22	92	4	76	43	34	0	21	1.53
42308739--42308891	13	12.0	13	70	16	106	16	22	24	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42308740--42308910	20	8.2	20	77	12	139	16	22	24	36	1.94
42308753--42308910	67	2.4	67	92	0	262	16	22	24	36	1.94
42308773--42308891	27	4.4	27	79	11	120	16	25	23	34	1.95
42308772--42308910	47	3.0	47	84	2	172	16	23	24	35	1.95
42309964--42309997	3	11.3	3	100	0	68	32	0	0	67	0.91
42313481--42313527	12	3.9	12	81	8	51	63	0	0	36	0.94
42313480--42313520	13	3.2	13	86	6	57	63	0	0	36	0.95
42313472--42313591	62	1.9	62	86	6	172	52	1	2	43	1.24
42313474--42313598	31	4.1	31	76	17	127	53	1	1	43	1.20
42313505--42313585	42	1.9	42	80	9	94	49	2	2	45	1.28
42314520--42314559	20	2.0	20	85	5	53	5	20	15	60	1.53
42317107--42317176	31	2.3	30	83	9	81	30	8	20	41	1.82
42322909--42323035	23	5.4	23	82	7	132	11	21	22	44	1.84
42322945--42323081	69	2.0	66	83	11	168	13	22	20	43	1.86
42330094--42330144	25	2.0	26	85	11	70	15	23	19	41	1.90
42330118--42330254	23	6.0	23	78	0	148	17	18	19	43	1.88
42330134--42330251	46	2.6	46	97	0	218	17	19	18	44	1.88
42330085--42330255	69	2.4	71	72	4	177	16	21	18	43	1.88
42332069--42332163	31	3.1	29	82	8	109	53	6	0	40	1.26
42332078--42332194	31	3.9	29	78	11	101	52	7	0	39	1.30
42337659--42337697	18	2.1	19	86	13	55	56	2	2	38	1.27
42339205--42339243	21	1.9	19	90	10	60	38	0	2	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42340753--42340826	28	2.6	28	75	14	71	31	1	2	64	1.15
42345141--42345421	132	2.1	132	87	1	402	29	27	22	20	1.98
42348007--42348080	3	25.3	3	76	13	57	33	4	1	60	1.24
42348007--42348045	11	3.5	11	89	3	60	33	2	0	64	1.08
42348007--42348072	28	2.4	27	85	7	80	33	4	1	60	1.26
42349031--42349080	25	2.0	24	92	3	82	56	18	0	26	1.42
42350570--42350688	29	4.1	29	72	8	89	53	5	5	34	1.49
42350580--42350718	59	2.3	59	83	8	167	55	6	5	33	1.47
42350607--42350742	60	2.4	56	84	7	159	56	7	4	31	1.47
42356214--42356256	19	2.1	22	87	12	65	44	0	0	55	0.99
42356246--42356290	10	4.5	10	81	10	56	42	0	0	57	0.98
42356219--42356306	20	3.5	27	70	28	77	48	0	0	51	1.00
42359843--42359904	3	20.7	3	86	6	90	32	1	0	66	1.02
42360276--42360338	28	2.3	26	80	15	74	65	3	9	22	1.37
42366600--42366843	104	2.3	104	81	5	271	24	18	28	28	1.98
42371678--42371806	55	2.3	54	93	2	213	23	29	21	25	1.99
42387511--42387577	30	2.2	30	83	2	80	44	13	19	22	1.85
42387456--42387629	89	2.0	89	80	3	199	47	12	17	22	1.80
42387500--42387637	31	4.6	30	71	8	102	47	9	18	24	1.77
42388487--42389503	82	12.5	82	83	4	1109	29	12	12	46	1.78
42388487--42389435	327	2.9	322	85	4	1208	28	12	12	46	1.78
42392016--42392139	50	2.5	50	92	1	196	30	6	11	51	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42392016--42392159	50	2.9	50	89	1	182	31	6	11	51	1.62
42396756--42396794	18	2.2	18	100	0	78	41	10	0	48	1.37
42397030--42397080	19	2.6	19	84	9	59	27	3	1	66	1.20
42403793--42403823	10	3.2	10	90	9	55	38	0	9	51	1.35
42403793--42403822	9	3.2	9	95	4	51	40	0	10	50	1.36
42404661--42404730	36	1.9	36	91	5	115	35	11	18	34	1.87
42404662--42404738	36	2.1	36	88	4	111	37	11	18	32	1.87
42417927--42417953	11	2.5	11	100	0	54	44	0	0	55	0.99
42418494--42418548	28	2.0	28	96	0	101	25	7	10	56	1.59
42418934--42418971	19	2.0	20	89	5	60	50	5	2	42	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171