genome.fa.s3.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  95  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30941435--30941476	21	2.0	21	85	0	57	33	4	21	40	1.74
30942263--30942371	18	5.7	19	78	7	82	65	2	2	29	1.21
30942282--30942352	9	7.8	9	74	13	65	70	2	1	25	1.09
30942655--30942711	30	1.9	29	85	3	78	36	1	0	61	1.07
30942621--30942716	18	5.2	18	71	13	70	33	2	1	63	1.13
30942704--30942744	18	2.3	19	83	8	50	24	0	0	75	0.80
30950290--30950319	14	2.1	14	100	0	60	23	20	30	26	1.98
30954826--30954888	16	3.9	15	80	12	72	41	1	25	31	1.65
30957159--30957292	62	2.2	62	94	0	232	30	24	22	22	1.99
30960206--30960235	5	5.8	5	92	7	51	80	0	0	20	0.72
30973082--30973432	53	6.7	52	84	5	438	31	22	17	29	1.96
30973082--30973432	159	2.2	158	88	3	510	31	22	17	29	1.96
30973082--30973432	106	3.3	106	88	2	494	31	22	17	29	1.96
30975527--30975585	24	2.5	24	85	0	82	49	10	13	27	1.74
30987987--30988020	16	2.1	17	88	5	52	32	2	8	55	1.45
30988435--30988499	25	2.6	26	75	7	71	44	0	4	50	1.22
30988525--30988560	6	6.0	6	100	0	72	50	0	0	50	1.00
30993070--30993397	81	4.0	81	83	2	399	31	12	10	45	1.75
30993070--30993397	160	2.0	164	85	2	439	31	12	10	45	1.75
30993526--30993556	12	2.5	13	94	5	55	19	0	25	54	1.44
30996038--30996371	158	2.1	158	87	0	470	28	22	24	24	1.99
30996654--30996704	24	2.1	25	82	7	61	33	5	7	52	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30998588--30998647	24	2.4	25	81	15	63	45	0	21	33	1.52
30998720--30998820	23	4.3	23	75	21	86	10	28	20	39	1.87
31000367--31000435	29	2.3	29	90	5	102	13	14	0	72	1.12
31004288--31004616	158	2.1	158	86	2	455	28	24	24	22	1.99
31006319--31006438	58	2.1	58	88	3	179	31	0	20	47	1.56
31006658--31006702	23	2.0	23	86	0	63	35	20	13	31	1.91
31010137--31010272	43	3.1	43	80	3	139	33	25	11	29	1.91
31014774--31014998	41	5.5	41	84	6	294	22	28	17	32	1.97
31014774--31014998	123	1.8	123	89	3	355	22	28	17	32	1.97
31014989--31015084	40	2.4	40	87	0	138	21	20	21	35	1.96
31015984--31016019	12	2.8	13	91	8	56	5	11	0	83	0.80
31015976--31016023	17	2.8	17	84	9	62	6	14	0	79	0.92
31015984--31016050	29	2.3	29	84	2	82	8	13	0	77	0.98
31019236--31019310	25	2.9	27	84	8	109	22	17	25	34	1.96
31025028--31025078	26	2.0	26	84	0	66	19	13	31	35	1.91
31025651--31025706	21	2.5	23	80	8	62	30	10	23	35	1.89
31025784--31025844	21	2.9	21	77	13	54	32	13	21	32	1.91
31026260--31026370	50	2.2	50	82	6	127	36	4	7	52	1.49
31026701--31026730	15	2.0	15	93	0	51	66	0	10	23	1.21
31032970--31033346	198	1.9	194	89	4	580	34	15	9	40	1.79
31033926--31033956	15	2.1	15	100	0	62	54	0	32	12	1.38
31042844--31042877	11	3.0	11	83	8	50	11	8	11	67	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31042919--31043007	23	3.8	23	78	11	74	11	7	11	69	1.36
31042934--31043031	24	4.1	23	77	11	74	10	8	12	69	1.37
31042912--31042995	35	2.4	34	82	4	87	10	7	11	70	1.34
31044033--31044075	22	1.9	22	90	4	68	20	9	4	65	1.40
31051966--31052016	22	2.2	23	89	6	77	19	7	7	64	1.44
31051961--31052080	61	2.0	61	93	0	204	25	8	10	56	1.60
31053007--31053174	81	2.1	81	80	1	185	16	22	12	48	1.79
31053584--31053643	21	2.9	21	82	5	68	31	23	18	26	1.97
31061845--31061887	11	3.9	11	79	11	52	0	20	0	79	0.74
31062933--31062971	19	2.0	21	85	10	55	7	38	0	53	1.30
31063519--31063549	16	1.9	16	93	0	53	0	29	3	67	1.06
31071864--31071902	21	1.9	19	90	10	60	43	0	7	48	1.31
31073579--31074030	195	2.3	197	82	6	522	26	19	27	26	1.99
31074783--31074834	21	2.5	21	81	6	61	28	13	25	32	1.93
31077303--31077331	14	2.0	15	93	6	51	0	48	0	51	1.00
31077649--31077688	21	1.9	19	85	14	53	17	30	15	37	1.90
31082275--31082350	21	3.6	21	75	15	59	32	26	9	31	1.88
31087849--31087941	47	1.9	47	89	4	141	41	15	7	35	1.75
31090728--31090770	22	2.0	22	95	0	77	20	13	30	34	1.92
31090730--31090777	22	2.2	22	84	0	60	25	16	27	31	1.97
31099280--31099407	30	4.3	30	77	6	118	36	5	22	35	1.78
31099280--31099407	61	2.1	58	79	9	132	36	5	22	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31101026--31101633	80	7.6	80	89	0	894	25	17	23	32	1.97
31101687--31101813	50	2.6	50	83	1	157	21	24	21	33	1.97
31109877--31109907	8	3.8	8	95	4	53	41	12	22	22	1.88
31113515--31113582	30	2.2	32	84	7	97	39	4	20	35	1.73
31117477--31117514	7	5.7	7	90	9	62	0	60	0	39	0.97
31117477--31117514	13	2.9	14	92	7	62	0	60	0	39	0.97
31117477--31117514	20	1.9	20	100	0	76	0	60	0	39	0.97
31122707--31122750	21	2.2	20	87	4	61	22	0	4	72	1.02
31124582--31124631	6	8.2	6	78	12	57	44	2	0	54	1.11
31124729--31124795	17	3.2	23	66	29	67	41	0	4	53	1.21
31130241--31130269	6	4.8	6	100	0	58	65	0	0	34	0.93
31133518--31133542	13	1.9	13	100	0	50	72	0	0	28	0.86
31134276--31134301	12	2.2	12	100	0	52	69	7	0	23	1.14
31137718--31137769	19	2.6	21	73	11	56	28	7	19	44	1.78
31141565--31141606	17	2.5	17	80	3	50	35	23	0	40	1.55
31145129--31145182	28	1.9	28	96	0	99	31	16	31	20	1.95
31151110--31151173	30	2.2	29	88	5	101	37	18	6	37	1.76
31156835--31156864	13	2.2	14	94	5	53	43	0	0	56	0.99
31156835--31156879	23	2.0	22	86	4	63	37	2	2	57	1.23
31157884--31157962	29	2.6	29	86	6	95	21	16	18	43	1.88
31159278--31159308	3	10.3	3	100	0	62	35	0	0	64	0.94
31161034--31161072	2	19.5	2	100	0	78	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31161140--31161173	17	2.1	17	94	5	61	44	0	0	55	0.99
31161147--31161184	20	1.9	20	88	0	58	39	0	0	60	0.97
31161952--31161998	4	11.8	4	86	8	69	51	0	0	48	1.00
31164178--31164329	25	6.3	25	78	15	167	46	17	3	32	1.66
31164178--31164331	45	3.3	45	94	4	254	46	16	3	32	1.66
31164197--31164329	20	6.4	20	75	17	94	46	18	3	31	1.66
31164199--31164299	20	4.8	20	83	11	130	46	17	3	31	1.67
31164992--31165208	49	4.4	49	77	4	222	28	35	17	18	1.94
31165007--31165209	98	2.1	98	85	3	266	29	36	16	17	1.92
31165120--31165285	85	2.0	85	82	2	208	30	34	18	17	1.94
31167128--31167185	22	2.6	22	88	0	89	39	18	29	12	1.87
31169617--31170316	234	3.0	234	96	0	1289	39	11	19	29	1.86
31172224--31172333	29	3.8	28	77	8	112	32	23	6	37	1.80
31172224--31172396	59	2.9	57	76	10	161	32	23	6	37	1.80
31172169--31172336	30	5.7	29	74	9	126	33	26	5	35	1.79
31172443--31172484	22	1.9	22	85	9	59	33	7	2	57	1.39
31172492--31172544	16	3.5	15	80	14	56	18	11	0	69	1.17
31172492--31172543	15	3.4	15	86	7	61	19	9	0	71	1.13
31172494--31172552	30	1.9	31	83	13	77	18	10	1	69	1.25
31172674--31172867	97	2.0	97	86	0	271	31	18	12	37	1.88
31174934--31175203	41	6.6	41	83	1	292	37	14	28	20	1.91
31174936--31175207	123	2.2	123	82	2	330	37	13	27	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31174869--31175203	82	4.1	82	78	5	295	37	14	26	21	1.92
31176610--31176721	42	2.6	42	78	2	116	40	15	25	19	1.90
31176934--31177015	38	2.2	38	79	0	92	10	32	13	42	1.79
31179784--31179887	37	2.7	38	76	5	93	32	25	18	24	1.97
31179990--31180026	18	2.1	18	89	0	56	24	27	0	48	1.51
31180324--31180359	18	2.1	18	89	5	56	33	25	0	41	1.55
31187393--31187431	6	6.5	6	87	0	51	23	30	0	46	1.53
31187734--31187767	17	1.9	18	88	5	52	35	23	0	41	1.55
31190558--31190686	65	2.0	65	87	3	188	41	18	27	13	1.87
31214216--31214254	18	2.1	19	86	13	55	56	2	2	38	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171