genome.fa.s3.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  163  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48412826--48413033	59	3.5	58	80	4	211	34	25	3	37	1.72
48412826--48413033	30	7.0	30	80	3	233	34	25	3	37	1.72
48412819--48413033	89	2.4	89	83	5	281	34	25	3	36	1.72
48413055--48413176	59	2.1	59	84	0	154	40	27	3	29	1.72
48412929--48413228	29	10.2	29	72	7	117	37	25	3	34	1.71
48414980--48415022	17	2.5	17	92	3	68	53	2	25	18	1.56
48420445--48420500	27	2.1	27	100	0	112	26	7	23	42	1.79
48422660--48422715	29	1.9	29	88	0	85	25	23	25	26	2.00
48425240--48425268	13	2.1	14	93	6	51	48	3	6	41	1.47
48426188--48426217	15	2.1	15	93	6	53	30	23	33	13	1.93
48426310--48426354	23	2.0	23	82	8	56	28	15	17	37	1.91
48426684--48426770	29	3.0	29	81	3	95	25	27	24	22	2.00
48430096--48430158	27	2.3	26	74	15	65	34	3	3	58	1.30
48431929--48431995	29	2.3	30	82	12	86	25	7	29	37	1.83
48432004--48432225	29	7.7	28	79	9	207	37	3	22	35	1.72
48431985--48432225	87	2.8	87	81	6	249	36	4	22	36	1.74
48431978--48432227	58	4.3	58	79	9	199	37	4	23	35	1.74
48433793--48433867	6	12.8	6	78	10	84	50	1	1	46	1.18
48433793--48433867	18	4.3	18	83	6	93	50	1	1	46	1.18
48434652--48434854	29	7.0	28	80	8	183	35	26	3	33	1.75
48434620--48434875	29	8.8	29	75	14	172	35	25	3	35	1.74
48434620--48434854	58	4.1	58	78	8	194	35	25	4	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48434662--48434850	87	2.1	88	80	7	215	34	26	3	34	1.75
48434652--48434932	146	1.9	146	80	9	324	34	26	4	34	1.76
48437140--48437190	25	2.0	25	100	0	102	31	19	7	41	1.80
48438076--48438156	29	2.8	29	75	0	81	23	14	19	41	1.89
48445045--48445124	41	2.0	40	90	4	126	48	8	13	28	1.72
48445888--48446139	30	8.4	30	80	6	253	36	19	2	42	1.64
48446098--48446167	28	2.4	29	83	6	81	40	17	2	40	1.64
48450723--48450790	2	34.0	2	100	0	136	50	0	0	50	1.00
48450940--48451100	30	5.4	30	84	5	184	40	4	21	32	1.73
48450940--48451094	59	2.6	58	84	5	184	41	4	20	33	1.73
48455737--48455938	59	3.5	58	76	9	205	37	5	25	32	1.79
48455851--48455924	28	2.6	28	76	16	80	36	2	25	35	1.71
48455737--48455993	30	8.7	30	69	15	146	35	5	25	33	1.78
48455737--48455994	59	4.4	59	77	10	149	35	5	25	34	1.78
48457019--48457052	12	2.8	12	95	0	59	50	0	0	50	1.00
48457921--48458001	17	4.8	17	81	0	99	51	4	2	40	1.37
48460750--48460942	36	5.4	36	77	11	148	26	17	16	39	1.91
48460750--48460972	73	3.1	73	81	2	245	25	16	17	40	1.90
48464007--48464031	6	4.2	6	100	0	50	84	0	0	16	0.63
48477978--48478011	17	2.0	17	88	0	50	44	8	0	47	1.34
48479189--48479283	23	4.1	23	82	5	120	47	14	3	34	1.61
48479361--48479563	66	3.1	66	86	1	255	43	26	10	19	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48479824--48479999	36	4.9	36	82	6	191	35	21	9	34	1.85
48479811--48479997	72	2.6	72	81	9	229	35	20	8	34	1.84
48489062--48489182	23	5.2	23	81	11	147	12	25	22	39	1.89
48489062--48489182	48	2.6	49	84	6	160	12	25	22	39	1.89
48489147--48489221	39	1.9	39	88	0	114	13	22	20	44	1.86
48489181--48489274	23	4.0	23	75	16	86	11	25	19	43	1.84
48495543--48495596	17	3.2	17	82	10	74	62	0	1	35	1.06
48495566--48495612	20	2.3	21	78	10	53	59	0	2	38	1.09
48499423--48499610	39	4.8	39	81	5	155	24	17	20	37	1.93
48499423--48499610	78	2.4	79	80	7	231	24	17	20	37	1.93
48506206--48506370	39	4.2	39	82	4	154	23	15	22	39	1.91
48507290--48507682	194	2.0	191	94	1	678	46	17	13	22	1.83
48517119--48517173	26	2.1	27	83	10	69	45	1	1	50	1.22
48519403--48519444	21	2.0	21	85	0	57	11	23	14	50	1.76
48521859--48521892	18	2.0	18	88	11	54	35	11	11	41	1.78
48522165--48522202	19	2.0	20	84	5	51	31	7	5	55	1.51
48525596--48525841	30	8.5	29	76	10	184	32	23	2	41	1.67
48525600--48525843	86	2.8	83	77	12	215	31	24	2	41	1.68
48525631--48525838	114	1.8	112	82	8	267	31	23	1	43	1.65
48525631--48525850	115	1.9	112	81	7	264	32	23	1	41	1.65
48531962--48531998	16	2.3	16	85	0	56	40	2	13	43	1.58
48534413--48534442	15	1.9	16	93	6	53	53	6	0	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48536855--48536920	5	12.8	5	75	12	62	71	3	3	22	1.14
48538547--48538657	49	2.3	46	80	15	136	29	7	5	57	1.48
48548816--48549037	30	7.4	29	80	10	209	34	27	2	35	1.70
48548816--48548994	60	3.0	60	84	9	242	35	26	1	36	1.67
48548985--48549067	29	2.9	28	79	13	89	36	27	3	32	1.74
48552186--48552217	9	3.7	9	95	4	57	46	9	25	18	1.79
48560332--48560402	36	2.0	36	94	0	124	29	22	21	26	1.99
48560829--48561024	30	6.6	30	81	4	245	38	26	1	33	1.66
48561018--48561094	30	2.7	28	76	7	82	35	23	6	35	1.81
48561113--48561189	30	2.6	30	78	12	86	35	20	5	38	1.75
48561364--48561948	321	1.8	322	79	6	677	34	17	13	33	1.89
48562991--48563021	8	4.0	8	91	8	55	22	51	0	25	1.48
48562991--48563021	15	2.0	15	93	6	53	22	51	0	25	1.48
48566794--48566888	19	5.5	18	71	18	62	24	2	1	72	1.02
48566797--48566888	6	14.5	6	73	10	67	25	2	1	71	1.03
48572242--48572283	20	2.1	20	100	0	84	57	4	4	33	1.41
48583137--48583178	22	2.0	21	85	4	57	33	9	23	33	1.87
48594439--48594502	26	2.4	25	82	12	67	42	1	3	53	1.26
48595042--48595113	23	2.9	24	84	10	83	69	4	0	26	1.06
48595036--48595113	17	4.6	16	74	20	61	70	3	0	25	1.04
48595036--48595113	18	4.5	18	76	19	60	70	3	0	25	1.04
48595033--48595113	8	9.5	8	72	17	58	69	3	0	27	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48599642--48599729	44	2.0	44	88	0	131	51	9	22	17	1.73
48600890--48601203	43	7.3	42	85	3	369	29	26	19	25	1.98
48600890--48601203	129	2.4	128	84	3	414	29	26	19	25	1.98
48607030--48607094	32	2.0	32	100	0	130	47	9	6	36	1.60
48607167--48607292	8	15.5	8	65	15	62	55	1	0	42	1.09
48607159--48607291	40	3.2	40	74	8	133	56	1	0	42	1.08
48607160--48607206	22	2.1	22	88	0	67	59	2	0	38	1.09
48607171--48607390	44	5.0	44	79	11	227	51	2	0	45	1.22
48607170--48607292	22	5.8	22	70	18	82	54	1	0	43	1.10
48607159--48607388	18	11.7	18	65	22	81	52	2	0	43	1.21
48611158--48611290	21	6.4	21	76	10	94	37	18	29	14	1.90
48611173--48611227	20	2.7	20	85	2	65	34	18	34	12	1.89
48611158--48611290	42	3.2	42	81	2	169	37	18	29	14	1.90
48613459--48613507	15	3.3	15	82	0	71	32	8	22	36	1.84
48613449--48613507	30	2.0	30	93	0	100	32	6	25	35	1.82
48613454--48613501	5	9.6	5	81	0	60	33	4	22	39	1.74
48613454--48613529	30	2.5	30	82	4	91	35	7	22	34	1.83
48614511--48614561	26	2.0	26	88	0	75	43	9	13	33	1.77
48621449--48621516	29	2.3	29	100	0	136	54	23	16	5	1.63
48624354--48624413	25	2.5	23	81	13	68	15	38	16	30	1.89
48626014--48626456	30	15.1	30	75	10	321	38	25	1	34	1.67
48625995--48626474	59	8.2	60	77	10	367	39	25	1	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48626001--48626537	30	18.4	30	70	16	165	37	24	2	35	1.68
48634758--48634831	21	3.6	21	75	13	66	59	2	1	36	1.20
48635738--48635779	22	2.0	21	85	4	57	33	9	23	33	1.87
48643088--48644191	517	2.1	517	92	2	1851	32	18	16	32	1.93
48646564--48646618	27	2.0	27	83	13	69	41	0	1	56	1.10
48646689--48646838	37	4.1	37	98	0	282	40	10	0	49	1.41
48647035--48647087	25	2.1	26	86	10	74	49	0	1	49	1.12
48652170--48652296	21	5.9	21	69	13	55	67	15	3	12	1.36
48652226--48652336	21	5.3	20	78	12	82	71	16	4	8	1.27
48653577--48653865	149	1.9	149	83	4	370	43	11	18	26	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171