genome.fa.s3.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  155  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46425662--46425692	2	15.5	2	100	0	62	0	0	48	51	1.00
46427091--46427122	17	2.0	17	88	11	50	62	0	0	37	0.95
46428753--46428896	57	2.5	57	80	2	164	56	5	7	29	1.50
46429213--46429241	14	2.0	15	93	6	51	34	0	10	55	1.34
46430377--46430588	109	1.9	109	84	3	284	39	17	13	29	1.88
46431254--46431373	49	2.4	49	82	5	136	30	14	31	24	1.94
46434622--46434664	20	2.3	18	92	8	68	67	4	0	27	1.10
46435061--46435262	101	2.0	101	100	0	404	42	11	11	33	1.78
46454485--46454586	22	4.5	22	91	2	132	35	27	23	13	1.93
46454485--46454586	45	2.3	45	84	3	134	35	27	23	13	1.93
46454482--46454602	22	5.4	22	84	6	118	38	24	23	13	1.91
46476544--46476693	23	6.4	23	75	8	101	40	23	24	12	1.88
46482777--46482901	23	5.5	22	77	4	106	42	24	21	12	1.86
46483830--46483855	7	3.7	7	100	0	52	46	11	11	30	1.76
46491040--46491078	21	2.0	20	90	10	62	30	7	0	61	1.24
46491045--46491114	27	3.1	21	73	25	54	32	5	4	57	1.42
46491071--46491119	14	3.6	14	78	15	66	36	4	6	53	1.45
46491067--46491122	27	2.1	27	100	0	112	35	3	7	53	1.46
46491094--46491265	75	2.4	72	88	3	256	29	8	3	58	1.45
46491214--46491251	19	2.0	20	94	5	69	31	7	0	60	1.25
46491218--46491265	20	2.5	20	83	10	55	33	8	2	56	1.41
46502684--46502732	24	2.0	24	88	0	71	28	18	32	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46503941--46503985	21	2.1	22	83	4	56	0	8	17	73	1.08
46505140--46505174	18	1.9	18	88	0	52	42	2	0	54	1.15
46507849--46507908	28	2.1	28	82	11	70	36	11	6	45	1.67
46509574--46509624	26	2.0	27	84	7	70	43	1	3	50	1.31
46509576--46509636	25	2.5	24	80	12	63	45	1	4	47	1.34
46509627--46509673	21	2.2	22	81	11	62	36	2	0	61	1.08
46509628--46509683	23	2.5	22	75	22	55	35	1	0	62	1.06
46512800--46512842	22	2.0	22	86	9	61	62	4	2	30	1.28
46512794--46512902	10	11.3	9	67	20	53	66	3	2	27	1.23
46512796--46512925	9	13.6	9	68	20	59	64	3	2	29	1.23
46514382--46514424	16	2.5	18	81	7	54	72	13	2	11	1.22
46519243--46519603	98	3.7	98	80	3	379	18	28	15	37	1.92
46519284--46519603	49	6.5	49	70	13	185	18	29	16	36	1.93
46530566--46530852	58	4.9	57	77	11	189	35	5	24	34	1.78
46530535--46530697	28	5.7	28	64	22	70	36	6	23	33	1.81
46530656--46530860	29	7.0	29	72	14	136	34	4	26	34	1.78
46530680--46530860	59	3.1	57	77	12	181	33	3	28	34	1.75
46532816--46532874	11	5.2	11	80	10	57	50	5	0	44	1.24
46532818--46532873	17	3.2	17	85	9	78	48	5	0	46	1.25
46532816--46532874	23	2.6	23	83	5	66	50	5	0	44	1.24
46532818--46532893	12	6.4	12	74	7	57	51	5	2	40	1.38
46532818--46532874	6	9.8	6	81	7	64	49	5	0	45	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46532915--46532944	15	2.0	15	93	0	51	66	0	3	30	1.07
46533553--46533875	78	4.1	78	84	1	380	26	20	28	24	1.99
46533654--46533877	39	5.7	39	68	11	145	27	22	25	24	2.00
46534087--46534236	40	3.5	39	68	23	111	34	21	14	29	1.93
46534128--46534281	52	3.2	52	65	24	145	33	20	15	31	1.94
46533961--46534299	92	3.7	92	93	1	554	33	19	16	31	1.94
46534294--46534563	101	2.7	101	89	0	398	12	25	21	40	1.88
46534294--46534779	50	9.7	50	72	8	222	12	26	21	39	1.89
46534420--46534701	150	1.9	147	82	6	354	13	25	21	39	1.90
46535926--46535979	27	2.1	26	83	13	67	5	14	1	77	1.03
46540601--46540742	58	2.4	58	82	1	176	38	3	21	35	1.71
46540699--46540897	29	6.8	30	74	15	166	37	2	24	36	1.67
46540601--46540892	59	5.0	56	79	8	239	37	3	23	35	1.71
46540699--46540927	29	7.8	28	75	9	165	36	3	23	36	1.72
46541167--46541195	10	2.9	10	100	0	58	62	0	17	20	1.33
46542663--46542721	11	5.2	11	80	10	57	50	5	0	44	1.24
46542665--46542720	17	3.2	17	85	9	78	48	5	0	46	1.25
46542663--46542721	23	2.6	23	83	5	66	50	5	0	44	1.24
46542665--46542740	12	6.4	12	74	7	57	51	5	2	40	1.38
46542665--46542721	6	9.8	6	81	7	64	49	5	0	45	1.24
46544712--46544817	17	6.2	17	83	0	104	34	1	6	56	1.36
46545506--46545551	21	2.2	22	85	14	62	54	2	4	39	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46545934--46545964	14	2.2	14	94	0	53	83	0	16	0	0.64
46546763--46546868	29	3.7	29	87	2	124	34	26	3	34	1.75
46546784--46546872	29	3.1	29	93	0	142	33	26	4	34	1.77
46546784--46546921	29	4.8	29	81	12	131	33	28	4	34	1.77
46546996--46547055	28	2.1	28	84	6	77	41	26	3	28	1.71
46546821--46547212	147	2.7	146	81	4	425	31	24	6	36	1.82
46548807--46548831	12	2.1	12	100	0	50	24	16	16	44	1.86
46555947--46556496	92	6.0	92	93	0	911	31	16	19	32	1.94
46556763--46556851	17	5.2	17	81	0	97	35	1	6	56	1.33
46557570--46557625	10	5.9	10	79	8	64	53	0	0	46	1.00
46557591--46557633	18	2.2	21	80	19	58	60	0	0	39	0.97
46557971--46558005	9	3.8	9	92	3	52	80	0	20	0	0.72
46558783--46558946	29	5.6	29	88	5	206	39	23	3	34	1.71
46558783--46558954	59	2.9	59	83	6	224	38	24	3	33	1.72
46558805--46559000	87	2.3	87	84	7	247	36	26	4	33	1.75
46559076--46559135	28	2.1	28	84	6	77	41	30	6	21	1.79
46559219--46559280	28	2.2	28	80	5	72	35	29	8	27	1.85
46560820--46560881	31	2.0	31	100	0	124	32	16	22	29	1.95
46562756--46562852	30	3.2	30	95	0	176	44	1	13	41	1.50
46563820--46563974	25	6.2	25	71	18	110	22	20	27	29	1.98
46563816--46563964	51	3.0	51	87	4	207	23	19	28	28	1.98
46573780--46573879	31	3.2	32	80	10	102	44	2	1	53	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46579560--46579666	31	3.5	30	77	12	112	28	14	8	48	1.73
46587948--46588076	30	4.3	30	82	5	138	35	3	23	37	1.73
46589908--46590011	6	18.0	6	71	18	78	54	1	1	41	1.22
46589908--46589999	17	5.7	16	83	11	116	55	1	2	41	1.19
46589910--46590005	31	3.4	28	81	9	88	56	1	2	40	1.18
46590329--46592747	68	34.9	68	91	4	3565	29	20	15	34	1.94
46590329--46592747	485	5.0	478	90	4	3719	29	20	15	34	1.94
46590329--46592742	553	4.4	553	95	1	4110	29	20	15	34	1.94
46590411--46592740	37	67.4	37	64	19	934	29	20	15	34	1.94
46592107--46592286	31	5.4	31	68	14	135	27	20	16	36	1.93
46604493--46604650	30	5.4	29	73	16	121	36	1	25	36	1.67
46604512--46604643	30	4.4	30	80	8	128	37	2	21	37	1.67
46604535--46604650	60	2.0	58	83	10	146	38	0	22	37	1.60
46605629--46605732	6	18.0	6	71	18	78	54	1	1	41	1.22
46605629--46605720	17	5.7	16	83	11	116	55	1	2	41	1.19
46605631--46605726	31	3.4	28	81	9	88	56	1	2	40	1.18
46606777--46606820	22	2.0	22	90	0	70	61	15	9	13	1.56
46609324--46609369	22	2.1	22	84	8	58	47	21	4	26	1.69
46612565--46612846	23	12.3	23	85	3	345	49	14	3	32	1.60
46618444--46618490	20	2.3	20	85	3	58	17	2	8	72	1.19
46619337--46619380	23	1.9	23	81	9	54	34	4	13	47	1.63
46619368--46619499	66	2.0	66	88	2	194	32	6	17	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46629245--46629307	24	2.6	24	84	0	81	25	14	11	49	1.76
46631221--46631283	24	2.6	24	84	0	81	25	12	11	50	1.73
46632633--46632675	22	2.0	20	86	8	59	48	0	0	51	1.00
46633384--46633442	14	4.4	14	73	12	52	32	0	3	64	1.10
46633393--46633441	15	3.2	16	75	16	50	34	0	4	61	1.15
46635008--46635063	23	2.3	24	85	11	71	50	1	5	42	1.35
46635079--46635118	19	2.2	18	86	4	53	65	2	0	32	1.06
46638495--46638558	29	2.2	30	88	2	94	56	14	6	23	1.61
46639244--46639300	20	2.8	21	72	20	57	43	29	0	26	1.55
46643711--46643822	36	3.1	36	84	0	152	31	8	24	36	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171