genome.fa.s3.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  127  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40321699--40321961	86	3.1	86	87	2	368	19	27	34	17	1.95
40321904--40322984	86	12.4	86	76	12	747	20	26	35	17	1.95
40321870--40322109	130	1.9	129	83	2	302	21	27	32	17	1.96
40322120--40322523	129	3.1	128	91	3	612	19	26	35	17	1.94
40321818--40322888	431	2.5	431	92	2	1759	20	26	35	17	1.95
40322545--40323015	129	3.6	129	82	11	537	19	26	36	17	1.94
40322726--40322847	53	2.3	53	91	2	194	24	27	34	13	1.93
40322597--40322972	182	2.1	182	91	3	616	20	26	35	17	1.94
40322778--40323015	43	5.5	43	73	12	184	19	26	36	16	1.93
40323652--40324767	43	26.4	43	74	14	770	16	28	35	19	1.94
40323652--40324767	86	13.2	86	78	9	868	16	28	35	19	1.94
40323652--40324767	129	8.8	128	74	13	875	16	28	35	19	1.94
40324146--40324378	75	2.9	76	81	8	236	18	24	36	20	1.95
40338990--40340100	43	26.4	43	75	10	884	19	35	28	17	1.94
40338989--40340100	128	8.8	128	74	12	876	19	35	28	16	1.94
40339272--40339347	35	2.2	35	90	0	116	19	32	32	14	1.92
40339229--40339386	78	2.0	78	84	7	205	19	35	29	15	1.93
40338989--40340079	171	6.5	168	79	11	738	19	35	28	16	1.94
40340745--40341972	43	29.0	43	67	15	440	17	35	26	20	1.95
40340822--40341820	85	11.8	83	73	15	500	17	34	26	20	1.95
40340906--40341026	52	2.3	53	90	4	185	13	34	27	24	1.93
40341083--40341777	84	8.3	85	78	9	689	17	35	26	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40340963--40341187	119	1.9	120	93	1	391	16	35	26	20	1.94
40341217--40341992	128	6.1	128	77	11	592	18	35	26	19	1.95
40340738--40342024	297	4.3	299	79	11	1178	17	35	26	20	1.95
40341763--40342024	86	3.1	86	86	2	359	18	34	27	19	1.95
40342316--40342340	3	8.3	3	100	0	50	64	0	0	36	0.94
40357993--40358492	31	14.4	36	67	18	140	33	16	20	29	1.94
40357986--40358211	69	3.3	69	93	1	375	32	15	21	30	1.95
40358100--40358310	99	2.1	99	97	0	395	34	17	21	27	1.96
40358199--40358564	68	5.1	69	86	7	400	33	16	19	29	1.94
40358031--40358379	167	2.1	168	97	0	664	33	16	21	28	1.95
40358358--40358560	76	2.7	76	89	3	284	33	17	17	31	1.94
40358803--40358873	31	2.4	29	88	4	97	39	4	0	56	1.19
40358801--40358871	11	6.5	11	73	15	58	39	4	0	56	1.19
40358850--40358884	17	2.1	17	88	0	52	45	2	0	51	1.16
40360522--40360834	163	1.9	163	93	1	540	25	16	13	44	1.83
40360992--40361389	30	13.5	29	67	10	164	31	27	4	36	1.76
40360991--40361392	59	6.8	59	88	5	464	31	27	4	36	1.77
40360991--40361425	119	3.7	118	86	4	603	31	27	4	36	1.78
40360992--40361425	178	2.5	175	87	3	622	31	27	4	36	1.77
40362654--40362719	29	2.3	29	78	0	78	57	3	6	33	1.38
40370584--40370631	13	3.8	12	81	8	60	70	0	0	29	0.87
40371968--40372017	19	2.4	21	83	9	59	58	10	0	32	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40372075--40372146	10	7.3	10	76	7	67	58	0	5	36	1.22
40372237--40372278	22	2.0	21	85	4	57	21	0	4	73	1.01
40372259--40372332	27	2.8	26	78	13	71	28	1	6	63	1.28
40377422--40377466	23	2.0	23	86	8	65	31	4	0	64	1.13
40378244--40378446	29	6.9	29	80	8	187	32	27	3	36	1.74
40378244--40378426	59	3.1	59	81	5	203	32	28	3	34	1.75
40378513--40378764	86	2.9	86	79	9	253	30	25	9	34	1.87
40378459--40378765	58	5.3	57	81	6	307	30	25	8	34	1.87
40378459--40378764	29	10.6	28	76	8	224	30	25	8	34	1.87
40378257--40378765	29	17.5	29	74	11	172	31	26	7	35	1.83
40381531--40381571	19	2.2	19	95	0	73	39	4	9	46	1.58
40383074--40383169	30	3.2	30	70	7	97	38	3	28	30	1.72
40383191--40383539	30	11.6	30	88	0	509	34	2	24	37	1.71
40383608--40383942	162	2.1	162	90	1	519	44	12	16	26	1.83
40383681--40384029	162	2.2	160	80	7	359	49	11	14	24	1.76
40384433--40384462	15	1.9	16	93	6	53	23	16	20	40	1.91
40385294--40385324	15	2.1	15	100	0	62	12	12	54	19	1.70
40385447--40385555	6	18.0	6	74	15	82	47	1	0	49	1.18
40385491--40385540	25	2.0	25	88	0	73	54	4	0	42	1.19
40385484--40385547	31	2.1	31	91	5	103	53	3	0	43	1.16
40385462--40385555	42	2.3	43	83	5	113	50	2	0	47	1.13
40385485--40385555	17	4.4	16	79	16	85	54	2	0	42	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40385782--40386477	68	10.1	68	89	2	966	27	20	17	34	1.95
40385893--40386477	205	2.9	204	93	0	1008	27	21	17	34	1.95
40385895--40386477	273	2.1	273	95	0	1040	27	21	17	34	1.95
40401507--40401728	30	7.5	31	66	9	124	35	5	27	31	1.81
40401507--40401755	59	4.2	59	88	3	351	34	6	26	31	1.82
40401737--40401845	30	3.6	30	93	0	191	35	3	23	36	1.73
40401948--40402256	161	1.9	161	86	3	444	45	13	15	24	1.83
40401991--40402340	161	2.2	157	79	9	384	48	13	15	22	1.80
40404335--40404366	16	2.0	16	93	0	55	40	0	6	53	1.26
40405166--40405213	13	3.8	12	81	8	60	70	0	0	29	0.87
40406550--40406599	19	2.4	21	83	9	59	58	10	0	32	1.31
40406657--40406728	10	7.3	10	76	7	67	58	0	5	36	1.22
40406819--40406860	22	2.0	21	85	4	57	21	0	4	73	1.01
40406841--40406914	27	2.8	26	78	13	71	28	1	6	63	1.28
40412003--40412046	23	2.0	22	90	4	70	31	4	0	63	1.14
40412825--40413027	29	6.9	29	80	8	187	32	27	3	36	1.74
40412825--40413007	59	3.1	59	81	5	203	32	28	3	34	1.75
40413094--40413345	86	2.9	86	79	9	253	30	25	9	34	1.87
40413040--40413346	58	5.3	57	81	6	307	30	25	8	34	1.87
40413040--40413345	29	10.6	28	76	8	224	30	25	8	34	1.87
40412838--40413346	29	17.5	29	74	11	172	31	26	7	35	1.83
40416112--40416152	19	2.2	19	95	0	73	39	4	9	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40417655--40417750	30	3.2	30	70	7	97	38	3	28	30	1.72
40417772--40418120	30	11.6	30	88	0	509	34	2	24	37	1.71
40418189--40418523	162	2.1	162	90	1	519	44	12	16	26	1.83
40418262--40418610	162	2.2	160	80	7	359	49	11	14	24	1.76
40419014--40419043	15	1.9	16	93	6	53	23	16	20	40	1.91
40419875--40419905	15	2.1	15	100	0	62	12	12	54	19	1.70
40420028--40420136	6	18.0	6	74	15	82	47	1	0	49	1.18
40420072--40420121	25	2.0	25	88	0	73	54	4	0	42	1.19
40420065--40420128	31	2.1	31	91	5	103	53	3	0	43	1.16
40420043--40420136	42	2.3	43	83	5	113	50	2	0	47	1.13
40420066--40420136	17	4.4	16	79	16	85	54	2	0	42	1.14
40420363--40421058	68	10.1	68	89	2	966	27	20	17	34	1.95
40420474--40421058	205	2.9	204	93	0	1008	27	21	17	34	1.95
40420476--40421058	273	2.1	273	95	0	1040	27	21	17	34	1.95
40432965--40433060	30	3.2	30	72	7	97	38	3	28	30	1.72
40433073--40433276	30	6.8	30	84	2	241	34	2	24	38	1.70
40433082--40433276	60	3.2	60	88	2	293	35	3	24	37	1.71
40433074--40433268	90	2.2	90	87	3	277	34	3	25	36	1.72
40433349--40433686	161	2.1	162	88	2	493	44	13	16	26	1.83
40433422--40433951	182	3.2	161	82	10	473	49	13	16	21	1.78
40433632--40433995	182	2.0	182	98	0	701	49	15	17	17	1.80
40434365--40434394	15	1.9	16	93	6	53	23	16	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40435224--40435254	15	2.1	15	100	0	62	12	12	54	19	1.70
40435412--40435482	6	12.2	6	76	16	69	54	2	0	42	1.14
40435411--40435474	31	2.1	31	91	5	103	53	3	0	43	1.16
40435418--40435467	25	2.0	25	88	0	73	54	4	0	42	1.19
40435412--40435482	17	4.4	16	79	16	85	54	2	0	42	1.14
40436393--40436438	17	2.7	17	89	0	74	39	0	2	58	1.10
40438985--40439178	97	2.0	97	84	4	257	36	13	18	31	1.90
40439558--40439955	29	13.6	28	79	8	300	33	3	26	36	1.72
40445900--40446207	59	5.2	59	91	1	449	35	7	26	30	1.83
40445983--40446191	29	7.1	29	66	13	122	33	8	28	29	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171