genome.fa.s3.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  148  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44699739--44699799	7	9.1	7	84	10	83	0	42	0	57	0.98
44699791--44699834	20	2.1	21	88	12	65	0	20	2	77	0.88
44706505--44706567	30	2.1	30	93	0	108	55	19	4	20	1.61
44708390--44708485	23	4.1	23	78	12	97	11	25	21	41	1.86
44708403--44708511	25	4.5	24	79	13	109	12	27	21	38	1.90
44708403--44708508	48	2.2	48	83	3	133	12	28	21	37	1.90
44710851--44710997	23	6.5	23	90	4	176	40	23	20	14	1.90
44710851--44710997	45	3.2	45	87	4	172	40	23	20	14	1.90
44710825--44710998	67	2.5	67	78	10	176	40	22	21	14	1.91
44710964--44711040	23	3.3	23	92	0	127	42	19	25	11	1.85
44711468--44711498	10	2.9	11	90	9	55	25	9	0	64	1.24
44713228--44713267	20	2.1	19	85	4	53	30	12	10	47	1.74
44717738--44717862	50	2.5	51	78	13	125	39	4	2	53	1.35
44718582--44718666	27	3.1	27	74	19	77	64	1	0	34	1.01
44718588--44718669	28	3.0	26	73	21	71	65	1	0	32	1.00
44726971--44727009	15	2.6	16	88	8	55	48	0	0	51	1.00
44726961--44727005	23	2.0	23	90	0	72	44	0	0	55	0.99
44726948--44727010	16	3.8	16	75	10	56	53	0	0	46	1.00
44742170--44742200	13	2.3	14	94	5	55	6	3	6	83	0.88
44746655--44746679	11	2.3	11	100	0	50	56	8	0	36	1.29
44753929--44753975	16	2.9	16	74	20	53	17	21	0	61	1.34
44755339--44755370	15	2.1	15	100	0	64	31	12	18	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44764029--44764062	2	17.5	2	93	6	61	50	0	0	50	1.00
44765667--44765728	26	2.4	25	79	12	63	54	6	1	37	1.36
44773038--44773204	7	24.7	7	75	7	103	35	20	23	20	1.96
44773045--44773211	20	8.3	20	79	2	165	35	20	22	20	1.96
44773035--44773164	27	4.8	27	80	3	145	36	20	23	20	1.95
44773035--44773184	27	5.6	27	80	7	90	36	20	22	20	1.95
44773139--44773197	13	4.4	14	77	8	52	38	15	22	23	1.92
44774074--44774107	17	2.0	17	100	0	68	23	23	17	35	1.95
44780384--44780457	7	10.7	7	86	2	78	32	21	24	21	1.98
44780384--44780457	14	5.4	14	81	3	96	32	21	24	21	1.98
44788191--44788243	18	2.9	19	69	11	56	35	0	3	60	1.15
44788199--44788256	27	2.3	25	82	11	66	41	0	3	55	1.17
44789561--44789674	54	2.1	53	85	1	147	32	16	15	35	1.91
44794484--44794593	58	1.9	58	86	3	159	47	15	0	37	1.46
44798320--44798359	16	2.5	15	92	8	62	35	7	30	27	1.84
44798529--44798677	32	5.2	27	69	21	90	51	0	1	46	1.14
44798529--44798683	58	2.6	59	86	9	201	51	0	1	46	1.13
44798529--44798674	29	5.0	29	68	22	92	51	0	1	46	1.14
44798648--44798704	24	2.3	24	79	8	62	59	0	5	35	1.20
44811176--44811266	39	2.4	39	85	7	107	29	17	23	29	1.97
44811193--44811272	39	2.0	40	95	2	144	30	17	22	30	1.97
44815229--44815303	11	6.5	11	75	11	62	5	25	0	69	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44815236--44815300	23	2.8	22	79	11	58	6	24	0	69	1.11
44815674--44815741	21	3.2	21	91	2	109	44	33	0	22	1.53
44815725--44815754	15	2.0	15	93	0	51	43	33	3	20	1.68
44815791--44815849	21	2.8	20	82	2	55	15	22	32	30	1.94
44815851--44815877	13	2.1	13	100	0	54	14	22	22	40	1.90
44816923--44816958	3	12.3	3	94	5	65	30	0	0	69	0.89
44818001--44818103	28	3.7	28	76	1	100	24	4	24	46	1.72
44818129--44818195	28	2.4	28	92	0	116	25	4	20	49	1.68
44818144--44818188	14	3.2	14	75	12	56	31	4	15	48	1.65
44818523--44818567	2	22.5	2	100	0	90	48	0	0	51	1.00
44827249--44827290	3	14.0	3	94	0	75	69	0	30	0	0.89
44829541--44830321	59	13.2	59	72	13	414	28	17	15	39	1.90
44829541--44830321	120	6.6	120	75	12	430	28	17	15	39	1.90
44829719--44829830	54	2.1	54	81	6	129	30	16	16	36	1.91
44829541--44830018	175	2.7	175	85	6	586	29	16	15	38	1.89
44831105--44831159	17	3.5	17	73	19	64	58	1	12	27	1.45
44831105--44831202	30	3.3	30	86	0	115	59	3	8	29	1.42
44831120--44831213	30	3.1	29	82	11	109	60	4	8	26	1.44
44831633--44831673	12	3.4	12	86	0	55	2	17	41	39	1.62
44831673--44831761	36	2.4	36	79	5	99	10	31	31	26	1.89
44832398--44832439	20	2.0	21	90	4	68	59	4	7	28	1.44
44833455--44833511	22	2.6	22	91	0	87	21	8	31	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44833604--44833900	86	3.5	85	84	5	406	46	5	4	43	1.47
44834015--44834048	17	2.0	17	94	0	59	44	8	0	47	1.34
44839554--44839744	62	3.3	57	74	13	165	45	14	13	26	1.82
44839715--44839834	53	2.2	55	85	7	163	48	12	13	25	1.77
44839583--44839953	172	2.2	172	80	7	439	43	15	15	24	1.86
44839841--44840128	58	4.9	59	75	9	214	44	15	13	26	1.83
44839337--44840127	57	13.7	58	70	15	215	43	14	13	27	1.84
44839811--44840127	117	2.7	114	72	10	264	44	15	13	26	1.84
44840133--44840315	60	3.1	59	74	12	189	36	13	17	32	1.89
44840130--44840337	60	3.6	58	69	19	148	37	13	17	30	1.89
44840438--44840574	61	2.3	61	81	10	160	43	8	14	33	1.75
44840943--44841329	59	6.6	58	75	8	270	41	13	14	30	1.85
44841137--44841327	57	3.3	58	75	12	203	38	14	15	31	1.88
44840974--44841329	115	3.1	116	82	3	385	40	13	15	30	1.86
44841324--44841547	59	3.9	59	80	5	260	45	8	14	31	1.75
44841324--44841535	118	1.8	114	84	4	289	46	7	14	32	1.72
44841908--44841946	14	2.7	15	88	7	55	58	0	2	38	1.12
44843832--44843897	19	3.4	20	74	14	66	48	0	1	50	1.10
44847408--44847483	39	1.9	40	86	2	109	36	3	9	50	1.53
44848877--44848908	14	2.3	14	94	0	55	90	0	9	0	0.45
44848879--44848915	11	3.2	11	92	7	56	86	0	13	0	0.57
44852052--44852112	31	2.0	31	90	0	95	44	6	13	36	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44854206--44854604	30	13.4	30	80	7	422	38	1	24	35	1.66
44863750--44863784	15	2.4	14	85	4	52	31	8	20	40	1.82
44868179--44868445	30	9.0	30	77	6	222	37	25	1	36	1.64
44868179--44868444	89	3.0	90	76	10	276	37	25	1	36	1.64
44868186--44868444	59	4.3	61	82	7	293	37	25	1	36	1.64
44868150--44868458	30	10.4	30	78	9	176	37	24	1	35	1.66
44868179--44868467	59	4.9	58	78	10	187	36	25	1	36	1.65
44874089--44874338	58	4.3	58	73	10	165	39	3	25	32	1.72
44874089--44874347	29	9.0	28	67	22	92	39	3	25	32	1.71
44874336--44874428	30	3.1	29	84	9	109	41	2	13	41	1.57
44875123--44875160	14	2.6	15	84	16	53	0	18	7	73	1.06
44875486--44875549	3	20.7	3	74	6	56	35	4	1	57	1.29
44876159--44876248	17	5.6	17	83	9	109	53	1	0	45	1.07
44876158--44876248	6	15.8	6	70	23	63	52	1	0	46	1.07
44876536--44876695	82	1.9	83	93	1	277	28	22	21	27	1.99
44876568--44876919	180	1.9	183	86	6	500	30	25	21	22	1.99
44884968--44885136	54	3.1	54	83	5	207	16	31	25	26	1.97
44886295--44886461	41	4.1	41	82	4	160	33	26	19	20	1.96
44900060--44900120	22	2.9	20	76	21	54	42	6	0	50	1.28
44900043--44900097	27	2.0	28	82	3	67	41	9	0	49	1.34
44900432--44900492	22	2.8	22	78	9	63	42	4	0	52	1.23
44899901--44901015	372	3.0	373	96	0	2049	41	8	5	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44900771--44900831	29	2.1	28	85	8	79	50	9	0	39	1.35
44900805--44900870	22	3.2	20	76	19	55	42	6	0	51	1.26
44906078--44906127	16	3.2	15	76	20	57	48	0	0	52	1.00
44908053--44908172	59	2.1	58	85	4	161	36	14	10	39	1.79
44908682--44908793	60	1.9	58	85	7	154	45	7	8	39	1.61
44911991--44912025	18	1.9	18	94	0	61	60	2	0	37	1.12
44913464--44913522	26	2.2	27	87	3	84	37	3	22	37	1.71
44921488--44921708	105	2.1	105	80	1	237	28	24	14	32	1.94
44928093--44928369	82	3.4	82	86	0	356	37	23	16	21	1.93
44929441--44929687	28	8.6	28	73	8	167	27	19	6	46	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171