genome.fa.s3.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  119  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37806491--37806803	58	5.3	59	79	7	237	33	24	6	35	1.81
37806458--37806651	90	2.2	88	85	3	255	36	24	3	36	1.71
37806491--37806780	29	9.9	30	74	15	191	33	25	6	34	1.81
37806701--37806803	29	3.6	29	74	12	79	34	26	7	31	1.85
37810050--37810148	39	2.5	39	96	0	180	26	5	15	53	1.62
37810194--37810288	32	3.0	32	96	0	172	30	11	20	37	1.88
37811324--37811350	9	3.0	9	100	0	54	88	0	11	0	0.50
37811391--37811435	23	2.0	23	87	12	67	57	2	15	24	1.49
37813436--37813476	21	1.9	22	85	5	57	60	0	31	7	1.24
37817035--37817066	17	1.9	17	93	6	57	65	0	34	0	0.93
37817069--37817168	44	2.3	44	96	0	182	38	17	26	19	1.93
37818009--37818533	148	3.6	148	78	9	504	32	16	32	18	1.93
37818009--37818520	50	10.5	50	74	10	377	32	16	33	18	1.93
37818338--37818570	50	4.7	50	82	3	238	34	16	30	18	1.93
37818346--37818561	99	2.2	100	80	5	249	34	17	30	18	1.93
37818136--37818568	240	1.8	239	81	6	536	33	15	31	18	1.93
37818795--37819016	39	5.7	38	72	10	137	24	30	19	26	1.98
37818791--37818998	79	2.6	79	82	0	220	24	30	18	26	1.98
37818871--37819026	79	2.0	77	86	2	213	25	29	19	25	1.98
37819025--37819902	209	4.2	209	86	2	1158	36	18	22	22	1.95
37820275--37820386	17	6.5	17	78	8	109	35	2	4	57	1.33
37820310--37820365	11	4.9	11	84	6	76	35	1	3	58	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37820304--37820353	23	2.2	23	92	0	82	38	0	4	58	1.17
37820304--37820371	6	11.7	6	77	12	61	38	1	2	57	1.23
37825084--37825131	24	2.0	24	88	8	71	41	27	6	25	1.79
37825759--37826095	52	6.5	52	87	2	462	36	23	13	27	1.91
37825759--37826095	104	3.2	104	90	0	512	36	23	13	27	1.91
37831323--37831379	2	29.0	2	85	3	80	45	0	5	49	1.24
37834645--37834776	56	2.4	56	88	2	194	36	28	18	17	1.93
37834645--37834776	28	4.7	28	81	2	167	36	28	18	17	1.93
37834648--37834802	28	5.5	28	82	1	127	36	27	16	20	1.93
37834794--37834861	28	2.5	28	82	2	84	27	23	14	33	1.94
37840049--37840290	30	8.1	30	79	4	265	40	2	20	37	1.66
37840046--37840290	89	2.7	89	82	9	277	40	2	20	36	1.65
37841683--37841964	42	6.9	42	78	7	303	26	17	24	31	1.97
37841682--37841960	122	2.3	122	91	0	432	26	17	24	31	1.97
37841683--37841964	80	3.5	81	78	9	297	26	17	24	31	1.97
37842166--37842508	49	7.0	49	76	2	213	19	25	17	37	1.93
37842896--37843117	112	2.0	112	90	1	347	39	11	19	29	1.87
37843425--37843467	7	5.7	7	79	15	50	0	20	0	79	0.74
37843423--37843469	17	2.7	18	80	12	62	0	23	0	76	0.78
37844351--37844469	63	1.9	62	89	5	186	11	21	12	54	1.69
37856112--37856214	33	3.0	33	80	13	125	39	1	13	44	1.55
37856112--37856209	38	2.7	37	84	9	123	40	2	13	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37861180--37861309	56	2.3	56	88	2	190	36	28	16	17	1.92
37861180--37861309	28	4.6	28	82	2	163	36	28	16	17	1.92
37861264--37861395	28	4.7	28	83	4	126	29	26	16	27	1.97
37861180--37861401	56	4.0	55	78	8	159	34	26	16	23	1.95
37866585--37866764	30	6.1	30	79	7	179	40	2	21	36	1.65
37866579--37866760	60	3.0	60	79	4	199	37	2	21	37	1.66
37866585--37866764	59	3.0	59	78	10	188	40	2	21	36	1.65
37868148--37868429	42	6.9	42	77	7	294	25	17	25	31	1.97
37868148--37868429	80	3.5	80	78	9	268	25	17	25	31	1.97
37868147--37868425	122	2.3	122	90	0	423	25	17	25	31	1.97
37868631--37868973	49	7.0	49	75	2	267	19	26	16	37	1.93
37868631--37868973	147	2.3	146	82	4	384	19	26	16	37	1.93
37869361--37869582	112	2.0	112	90	1	356	37	11	20	30	1.88
37869890--37869932	7	5.7	7	79	15	50	0	20	0	79	0.74
37869888--37869934	17	2.7	18	80	12	62	0	23	0	76	0.78
37875059--37875152	30	3.2	29	82	11	104	42	5	20	31	1.74
37881132--37881263	50	2.7	49	76	12	137	34	5	7	53	1.52
37882615--37882717	33	3.0	33	80	13	125	39	1	13	44	1.55
37882615--37882712	38	2.7	37	84	9	123	40	2	13	43	1.55
37895997--37896182	39	4.8	39	82	2	205	24	17	20	36	1.94
37896006--37896183	78	2.3	78	87	0	230	25	17	20	35	1.95
37896260--37896449	72	2.6	69	81	13	206	24	30	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37899625--37899668	18	2.4	18	82	17	56	75	0	13	11	1.06
37910131--37910171	12	3.4	12	81	18	50	0	34	0	65	0.93
37919686--37919722	19	1.9	19	88	0	56	45	10	21	21	1.82
37923921--37923957	18	2.1	18	89	0	56	48	0	27	24	1.51
37929149--37929210	6	10.5	6	74	10	56	48	0	22	29	1.51
37930880--37930945	20	3.3	20	68	16	55	54	0	6	39	1.25
37930874--37930948	40	1.9	40	91	2	125	57	0	5	37	1.22
37931140--37931171	5	6.4	5	92	0	55	43	3	0	53	1.16
37931476--37931511	18	1.9	19	88	5	56	41	5	0	52	1.24
37936149--37936179	14	2.2	14	94	0	53	58	0	0	41	0.98
37936163--37936235	32	2.3	31	88	9	103	54	4	0	41	1.19
37936714--37936775	23	2.7	23	80	7	74	45	1	0	53	1.10
37949220--37949259	18	2.4	17	87	8	55	45	15	17	22	1.85
37950561--37950639	27	2.9	27	75	7	88	29	21	15	34	1.94
37955919--37955969	25	2.0	26	88	3	77	41	11	9	37	1.75
37963384--37963483	36	2.8	35	76	3	101	36	15	24	25	1.94
37965720--37965776	3	19.0	3	96	0	69	66	8	0	24	1.20
37966402--37966566	87	1.9	88	87	3	244	38	21	10	29	1.87
37966398--37966573	44	4.0	44	89	1	239	36	22	10	30	1.87
37973530--37973583	17	3.1	17	89	5	72	20	37	20	22	1.95
37973760--37973870	34	3.3	34	83	2	107	27	20	25	26	1.99
37973794--37973875	17	4.8	17	66	8	51	29	19	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37974264--37974346	41	2.0	41	100	0	166	45	12	19	22	1.83
37981456--37981489	7	4.6	7	89	10	50	82	0	17	0	0.67
37981783--37981807	12	2.1	12	100	0	50	24	52	0	24	1.48
37982234--37982326	45	2.1	45	89	4	143	23	27	16	32	1.96
37982796--37983392	297	2.0	297	91	1	973	30	23	19	25	1.98
37983275--37983639	188	1.9	188	93	1	633	26	21	16	35	1.94
37983685--37983732	25	1.9	25	100	0	96	56	0	12	31	1.37
37983970--37984010	18	2.3	18	87	4	57	82	0	7	9	0.83
37983969--37984010	17	2.3	19	80	12	52	83	0	7	9	0.81
37985667--37985765	46	2.2	46	85	3	128	43	19	24	13	1.86
37985667--37985744	23	3.4	23	94	0	129	44	19	21	14	1.85
37992852--37992952	23	4.4	23	83	5	116	43	20	23	11	1.85
37992805--37992951	68	2.1	67	81	10	165	43	20	23	12	1.86
37999984--38000055	25	2.8	24	89	6	99	37	22	29	11	1.88
38000034--38000112	23	3.4	23	87	0	122	46	21	21	10	1.80
38000566--38000596	10	2.9	11	90	9	55	25	9	0	64	1.24
38006367--38006413	19	2.5	19	82	6	60	63	4	0	31	1.13
38007258--38007316	29	2.0	29	83	6	75	76	0	1	22	0.88
38007285--38007316	9	3.6	9	100	0	64	81	0	0	18	0.70
38007258--38007339	38	2.1	40	84	11	107	73	0	1	25	0.91
38007334--38007380	19	2.5	20	75	10	53	53	2	0	44	1.12
38008001--38008047	21	2.4	19	82	13	51	76	4	4	14	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38008618--38008651	17	2.1	16	88	5	50	52	2	5	38	1.41
38010168--38010205	20	1.9	20	100	0	76	50	10	7	31	1.66
38010809--38010940	66	2.0	66	100	0	264	18	18	22	40	1.91
38020989--38021079	47	2.0	46	93	2	155	51	7	15	25	1.69
38030720--38030749	12	2.6	12	94	5	53	26	6	0	66	1.16
38030743--38030789	21	2.4	19	89	7	67	40	4	0	55	1.19
38030783--38030823	15	2.9	14	86	10	57	43	0	0	56	0.99
38030798--38030823	13	2.0	13	100	0	52	46	0	0	53	1.00
38034041--38034216	93	1.9	93	93	0	307	38	27	7	26	1.83
38034696--38034800	36	2.9	36	91	1	174	18	28	17	36	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171