genome.fa.s3.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  116  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36943126--36943260	50	2.6	50	86	6	164	33	14	23	28	1.94
36947018--36947111	37	2.5	37	96	0	170	24	20	26	28	1.99
36959266--36959831	281	2.0	280	98	1	1100	39	9	12	38	1.75
36961686--36961728	21	2.0	21	90	4	68	41	0	0	58	0.98
36961660--36961729	31	2.3	31	80	5	88	47	1	0	51	1.09
36961868--36961939	36	2.1	36	92	5	121	50	2	6	40	1.44
36961871--36961948	36	2.3	35	86	8	108	51	2	6	39	1.41
36963127--36963163	18	2.1	17	90	5	56	54	5	0	40	1.24
36970911--36970950	15	2.5	16	84	8	55	35	2	0	62	1.09
36970911--36970952	8	5.2	8	77	11	50	35	2	0	61	1.09
36972771--36972803	2	16.0	2	93	6	57	48	3	0	48	1.17
36986155--36986190	16	2.2	17	95	5	65	22	0	0	77	0.76
37005644--37005850	91	2.3	91	93	1	353	37	9	11	42	1.72
37006280--37006381	46	2.2	46	85	0	132	40	18	9	31	1.83
37007370--37007445	32	2.4	33	89	8	113	55	18	1	25	1.50
37014082--37014146	30	2.2	30	88	0	94	60	12	3	24	1.47
37015557--37015606	24	2.1	24	92	0	82	42	4	12	42	1.60
37016045--37016076	8	3.9	8	92	8	55	65	9	0	25	1.22
37016044--37016076	17	1.9	17	100	0	66	66	9	0	24	1.20
37017181--37017220	21	1.9	21	84	0	53	67	2	2	27	1.16
37018439--37018536	49	2.0	49	100	0	196	38	6	8	46	1.58
37018650--37018680	16	1.9	16	100	0	62	64	0	12	22	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37019296--37019381	36	2.4	36	96	0	154	26	16	30	26	1.97
37019632--37019844	30	7.5	28	74	14	163	36	28	2	32	1.72
37019653--37019750	51	1.9	52	89	6	155	35	26	2	35	1.68
37019759--37019877	29	4.0	29	76	9	116	33	32	4	29	1.77
37019733--37019844	58	1.9	60	89	5	176	36	29	2	31	1.71
37019759--37019877	58	2.0	60	82	6	145	33	32	4	29	1.77
37019810--37019892	29	2.9	28	81	12	80	30	31	7	31	1.84
37040818--37040873	23	2.5	22	88	8	85	42	25	19	12	1.86
37041472--37041506	10	3.2	11	88	12	54	22	14	0	62	1.31
37047729--37047808	31	2.6	31	83	0	88	21	16	36	26	1.94
37048556--37048765	54	3.9	54	77	0	179	41	10	18	29	1.83
37067474--37067506	3	11.0	3	100	0	66	33	0	0	66	0.92
37074046--37074102	24	2.5	24	91	5	91	15	3	22	57	1.53
37074907--37074931	2	12.5	2	100	0	50	52	0	0	48	1.00
37087809--37087844	18	1.9	19	88	5	56	66	0	2	30	1.06
37089485--37089510	7	3.7	7	100	0	52	11	0	46	42	1.40
37089461--37089774	153	2.0	157	93	4	546	32	9	24	33	1.88
37092455--37092506	24	2.2	24	82	0	59	51	5	3	38	1.44
37092958--37093004	18	2.6	19	77	19	55	68	6	0	25	1.13
37092986--37093221	118	2.0	118	99	0	463	51	7	13	27	1.67
37093579--37093658	38	2.1	38	84	11	101	53	0	1	45	1.08
37094277--37094315	15	2.4	16	87	8	53	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37094303--37094386	30	2.6	32	83	10	93	46	1	1	51	1.16
37094272--37094428	82	1.9	84	81	6	194	47	1	0	50	1.13
37095630--37095671	21	2.0	21	90	0	66	47	0	2	50	1.14
37096691--37096733	21	2.0	21	82	8	52	44	9	4	41	1.57
37101292--37101317	13	2.0	13	100	0	52	53	0	0	46	1.00
37103304--37103329	10	2.6	10	100	0	52	61	7	0	30	1.24
37106299--37106339	19	2.2	19	86	0	55	24	4	26	43	1.74
37107461--37107938	238	2.0	238	86	2	665	32	7	7	53	1.55
37108452--37108494	17	2.5	17	100	0	86	11	32	9	46	1.72
37111169--37111218	24	2.1	23	81	3	55	52	0	0	48	1.00
37111197--37111256	29	2.0	30	81	9	70	58	3	0	38	1.15
37116709--37116748	17	2.4	17	82	0	53	12	15	50	22	1.77
37122231--37122368	23	5.9	22	78	16	111	10	25	23	40	1.87
37122231--37122344	46	2.5	45	79	12	142	10	24	23	41	1.86
37122289--37122331	22	1.9	23	85	4	61	13	25	23	37	1.92
37125773--37125801	12	2.3	13	94	5	51	65	6	0	27	1.18
37125827--37125867	14	2.8	15	82	13	50	58	2	0	39	1.11
37125824--37125871	23	2.1	23	84	7	62	58	2	0	39	1.10
37126097--37126137	17	2.3	18	87	4	57	36	7	7	48	1.59
37126430--37126483	27	2.0	27	88	3	81	53	1	0	44	1.11
37126632--37126671	21	1.9	21	89	0	62	47	25	10	17	1.78
37127353--37127847	255	1.9	255	97	0	945	42	18	13	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37129217--37129249	4	8.2	4	100	0	66	75	0	0	24	0.80
37129742--37129936	30	6.6	29	76	10	128	37	23	6	32	1.79
37135033--37135093	6	10.0	6	83	16	81	80	0	18	1	0.80
37135032--37135092	19	3.3	19	80	11	81	81	0	16	1	0.76
37135975--37136146	48	3.6	46	76	9	148	39	13	24	22	1.90
37135974--37136105	49	2.7	48	80	9	151	39	11	23	25	1.88
37136396--37136955	123	4.6	123	88	3	833	39	18	21	20	1.92
37136396--37136959	245	2.3	247	88	4	854	39	18	22	20	1.93
37136862--37136954	48	1.9	48	85	8	127	38	17	21	22	1.93
37137533--37137568	18	2.0	18	89	10	56	16	5	0	77	0.94
37138341--37138386	22	2.2	22	88	7	69	45	4	17	32	1.68
37138479--37138567	44	2.0	44	95	0	160	30	23	20	25	1.98
37140846--37141038	29	6.6	30	75	9	100	34	22	6	36	1.81
37140855--37141024	29	5.8	30	76	6	159	35	22	7	34	1.82
37140866--37141027	59	2.8	59	80	2	157	36	22	6	34	1.81
37145232--37145266	3	11.7	3	93	0	61	62	0	2	34	1.10
37145573--37145722	41	3.9	38	75	16	130	47	1	7	44	1.39
37145570--37145716	78	1.9	79	83	5	192	44	1	7	46	1.40
37145570--37145694	37	3.3	36	77	16	110	46	0	7	45	1.36
37145570--37145722	77	2.0	77	82	7	186	46	1	7	45	1.39
37145792--37145856	28	2.5	25	77	18	69	44	1	7	46	1.41
37155311--37155415	41	2.6	41	83	3	131	39	13	20	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37155448--37155540	40	2.3	40	92	0	150	44	8	25	21	1.81
37162234--37162420	41	4.6	41	89	1	277	37	13	24	24	1.91
37162453--37162545	40	2.3	40	86	0	132	45	8	24	21	1.80
37162955--37162995	21	2.0	21	90	0	64	31	17	14	36	1.90
37164916--37164945	15	2.0	15	100	0	60	33	13	33	20	1.91
37165694--37165733	21	1.9	21	89	0	62	47	25	10	17	1.78
37170145--37170203	30	2.0	30	89	0	91	32	42	8	16	1.79
37183120--37183361	129	1.9	129	87	1	360	34	14	20	30	1.92
37184145--37184182	14	2.6	15	83	4	51	71	2	10	15	1.25
37187718--37187832	26	4.5	26	82	1	133	32	17	23	26	1.97
37217466--37217490	6	4.2	6	100	0	50	16	0	0	84	0.63
37218696--37218727	12	2.6	13	90	9	50	12	0	6	81	0.87
37220684--37220731	9	5.2	9	77	5	51	77	0	22	0	0.78
37220673--37220735	10	6.3	10	73	12	58	77	0	22	0	0.76
37220673--37220737	33	2.0	32	85	14	89	75	0	24	0	0.81
37221659--37223260	98	16.4	98	82	1	1573	35	15	27	21	1.93
37221655--37223256	49	32.7	49	72	4	847	35	15	27	21	1.93
37223524--37224180	42	16.2	40	75	9	482	31	26	17	24	1.97
37223524--37224144	81	7.7	82	81	6	537	31	26	16	25	1.97
37223524--37224144	123	5.1	123	77	8	550	31	26	16	25	1.97
37233100--37233245	10	15.4	9	66	17	57	64	3	0	31	1.15
37233121--37233199	29	2.7	30	83	14	103	60	3	1	34	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37233125--37233199	30	2.6	29	85	10	93	60	4	1	34	1.24
37233133--37233206	31	2.4	30	84	6	87	60	4	1	33	1.24
37233182--37233239	21	2.8	21	76	12	66	67	1	0	31	1.01
37233151--37233238	31	3.0	29	76	15	81	63	3	0	32	1.11
37233177--37233235	19	2.9	20	82	7	66	62	3	0	33	1.12
37233112--37233228	31	3.9	31	75	10	82	61	3	0	34	1.19
37234114--37234154	5	8.2	5	94	0	55	0	26	0	73	0.84
37234741--37234777	2	18.5	2	94	0	65	2	45	0	51	1.15
37237686--37237726	20	2.0	20	86	9	57	63	0	4	31	1.15
37241957--37242127	23	7.3	23	75	10	125	46	19	21	12	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171