genome.fa.s3.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  31  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14113331--14113383	23	2.2	23	83	6	61	56	7	1	33	1.38
14117577--14117606	15	2.1	14	93	6	51	6	26	0	66	1.16
14119319--14119344	2	13.0	2	100	0	52	50	0	0	50	1.00
14144002--14144069	28	2.4	28	82	9	75	55	4	1	38	1.29
14145985--14146029	17	2.4	19	85	10	58	46	6	6	40	1.56
14147125--14147164	11	3.5	11	86	6	53	50	2	0	47	1.14
14147133--14147164	6	5.5	6	92	7	57	53	0	0	46	1.00
14147552--14147683	58	2.3	55	79	14	144	28	14	16	40	1.88
14147598--14147714	54	2.1	57	79	9	125	29	17	15	36	1.91
14148177--14148258	43	1.9	43	87	0	119	36	12	21	29	1.90
14148476--14148524	19	2.7	19	73	17	50	57	2	4	36	1.30
14157242--14157451	94	2.3	93	85	3	273	25	20	27	25	1.99
14163355--14163390	18	2.0	18	94	0	63	30	38	25	5	1.78
14177006--14177434	121	3.5	121	92	2	668	39	8	15	37	1.77
14178524--14178666	70	2.0	70	100	0	286	55	6	8	29	1.56
14178746--14178801	28	2.0	28	85	0	76	25	1	3	69	1.14
14178733--14178790	8	6.8	8	74	14	53	29	1	0	68	0.99
14186105--14186180	30	2.6	29	83	6	89	56	10	0	32	1.33
14191745--14192060	45	7.0	45	86	2	386	25	26	22	25	2.00
14195090--14195361	136	2.0	136	94	0	481	29	15	16	39	1.89
14208115--14208575	62	7.8	60	77	10	409	24	16	15	42	1.88
14208284--14208392	53	2.1	53	92	0	182	21	18	16	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14208115--14208565	121	3.9	113	78	11	389	24	17	15	42	1.88
14208338--14208536	59	3.3	60	83	8	233	27	14	13	45	1.82
14208115--14208556	174	2.5	174	78	10	457	24	17	16	42	1.88
14208337--14208575	61	3.9	62	81	6	247	27	15	13	43	1.85
14209386--14209436	18	2.6	19	75	21	52	62	0	5	31	1.19
14209425--14209482	24	2.4	24	83	16	68	65	0	6	27	1.18
14209433--14209537	18	6.6	17	68	26	61	60	3	6	28	1.39
14209436--14209549	30	3.8	30	90	1	176	60	4	6	28	1.40
14210684--14210750	34	1.9	34	87	3	98	56	4	4	34	1.39
14210831--14210875	20	2.4	18	85	10	63	66	4	6	22	1.33
14211849--14211932	42	2.0	42	86	4	116	30	0	22	46	1.52
14213932--14213986	27	2.0	29	85	7	78	41	12	10	34	1.78
14214889--14215062	56	3.0	56	76	10	147	39	15	16	28	1.89
14214889--14215038	58	2.5	59	75	14	157	38	16	18	26	1.91
14215125--14215458	54	6.1	54	70	16	208	38	14	15	31	1.88
14233812--14233836	6	4.2	6	100	0	50	0	16	16	68	1.22
14240580--14240610	13	2.4	13	100	0	62	67	0	9	22	1.19
14241814--14241838	13	1.9	13	100	0	50	36	0	16	48	1.46
14254975--14255030	29	1.9	29	85	7	78	37	7	12	42	1.70
14256843--14256891	23	2.3	20	83	16	55	8	14	0	77	0.98
14290738--14290855	58	2.0	58	100	0	236	35	25	11	27	1.91
14294698--14294811	23	5.0	23	80	4	115	41	23	23	11	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14298525--14298685	87	1.9	84	92	3	268	27	14	22	34	1.94
14303207--14303249	15	2.9	15	80	16	54	48	0	6	44	1.29
14307513--14307539	14	1.9	14	100	0	54	74	0	0	25	0.83
14323730--14323757	13	2.2	13	100	0	56	71	0	0	28	0.86
14339632--14339757	38	3.3	37	80	12	130	30	11	10	47	1.73
14340035--14340123	42	2.1	42	93	0	151	32	23	25	17	1.97
14341620--14341708	6	14.8	6	100	0	178	0	66	16	16	1.26
14343011--14343245	121	1.9	122	86	2	339	38	4	8	48	1.54
14343307--14343364	27	2.2	26	79	11	64	51	6	3	37	1.46
14348488--14348513	2	13.0	2	100	0	52	0	50	0	50	1.00
14353573--14353598	2	13.0	2	100	0	52	50	0	0	50	1.00
14364012--14364051	21	1.9	21	89	0	62	62	5	15	17	1.49
14374389--14374447	30	2.0	30	83	3	75	44	5	5	45	1.47
14377680--14377736	28	2.1	27	83	3	69	57	3	0	38	1.16
14377680--14377770	9	9.7	9	77	9	74	57	5	2	35	1.34
14378071--14378159	19	4.8	19	73	14	60	34	3	1	60	1.20
14387040--14387094	22	2.5	23	78	18	64	25	5	5	63	1.38
14389493--14389540	23	2.1	23	88	0	69	43	22	27	6	1.77
14391523--14391707	74	2.6	72	92	2	291	24	4	15	55	1.58
14393147--14393224	27	3.2	26	62	27	62	34	8	16	39	1.80
14393132--14393224	46	2.0	46	93	0	159	34	9	16	39	1.81
14396910--14397029	23	5.4	23	72	16	110	42	21	24	11	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14399344--14399458	43	2.7	42	82	2	131	27	17	26	28	1.97
14400973--14401002	13	2.3	13	94	0	51	40	20	0	40	1.52
14404109--14404148	20	2.0	20	86	13	57	77	0	5	17	0.94
14404116--14404161	14	3.4	14	80	19	53	76	0	2	21	0.90
14406901--14406935	16	2.2	16	89	0	52	77	5	8	8	1.13
14407798--14407866	34	2.0	34	100	0	138	55	8	5	30	1.54
14408761--14408830	21	3.3	21	79	0	68	34	10	1	54	1.43
14410099--14410196	28	3.4	30	87	8	150	53	0	1	45	1.07
14411085--14411156	29	2.4	30	93	2	119	45	1	1	51	1.18
14413862--14413896	17	2.1	17	88	0	52	17	25	40	17	1.90
14414948--14415051	37	2.7	38	76	5	93	31	26	19	22	1.97
14415788--14415822	17	2.0	18	88	5	54	0	40	0	60	0.97
14415911--14415994	11	6.7	13	75	17	61	54	2	0	42	1.13
14415912--14415958	14	3.4	14	93	0	76	61	4	0	34	1.15
14415925--14415994	13	5.5	12	78	14	52	52	2	0	44	1.15
14417638--14417671	2	17.0	2	87	0	50	50	0	2	47	1.16
14418903--14419021	58	2.1	58	90	3	186	32	0	19	47	1.49
14420310--14420360	26	1.9	27	84	4	68	58	0	0	41	0.98
14421054--14421099	19	2.4	19	77	0	56	39	2	2	56	1.24
14426114--14426156	14	3.1	13	80	12	50	67	0	2	30	1.03
14426845--14426911	2	34.0	2	96	3	127	49	0	0	50	1.00
14427446--14427480	17	2.1	17	100	0	70	54	5	17	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14427656--14427691	18	2.1	18	94	5	65	69	2	0	27	1.02
14432914--14432949	19	1.9	18	88	5	54	27	5	5	61	1.41
14440719--14440884	87	1.9	86	87	7	248	27	15	22	35	1.93
14456626--14456691	35	2.0	35	85	8	93	54	7	4	33	1.49
14456689--14456713	13	1.9	13	100	0	50	40	4	0	56	1.18
14465222--14465251	2	15.0	2	100	0	60	0	50	0	50	1.00
14468807--14469026	110	2.0	110	98	0	422	44	10	5	40	1.61
14469568--14469623	23	2.4	23	85	5	69	37	23	30	8	1.85
14471335--14471465	43	3.0	43	68	12	115	23	25	33	17	1.96
14471308--14471488	86	2.1	86	86	2	247	24	25	30	18	1.98
14471549--14471604	24	2.3	25	81	9	62	67	1	0	30	1.01
14480342--14480391	26	1.9	26	84	8	66	44	6	2	48	1.39
14481257--14481347	28	3.2	28	80	10	96	67	1	4	27	1.17
14481482--14481654	90	1.9	89	82	3	213	36	8	14	39	1.77
14489218--14489253	5	7.2	5	93	0	63	0	55	0	44	0.99
14494586--14494772	93	2.0	93	97	0	356	37	23	6	31	1.81
14501967--14501991	3	8.3	3	100	0	50	0	32	36	32	1.58
14508687--14508721	18	1.9	18	88	0	52	17	11	0	71	1.14
14518932--14518973	20	2.1	20	86	8	59	64	7	0	28	1.20
14520226--14520254	13	2.1	14	93	6	51	20	0	0	79	0.74
14520458--14520492	18	2.0	18	88	5	54	42	5	0	51	1.25
14520462--14520500	18	2.1	18	85	4	51	41	2	0	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14521027--14521052	13	2.0	13	100	0	52	53	0	23	23	1.46
14529607--14529633	3	9.0	3	100	0	54	33	0	33	33	1.58
14541485--14541565	36	2.2	37	80	10	94	55	2	1	40	1.21
14542583--14542660	36	2.2	36	97	0	147	24	14	6	55	1.62
14553239--14553367	9	14.0	9	66	15	50	58	3	3	34	1.29
14565908--14566050	71	2.0	71	97	0	268	28	12	24	34	1.92
14575188--14575260	29	2.5	30	76	10	80	34	2	8	54	1.44
14578113--14578153	21	1.9	22	85	14	59	41	0	9	48	1.36
14578212--14578268	21	2.7	22	73	7	57	59	8	1	29	1.38
14579850--14579874	6	4.2	6	100	0	50	0	16	52	32	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171