genome.fa.s3.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  50  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20898240--20898486	31	7.4	31	68	18	156	36	19	19	24	1.95
20898818--20898966	76	2.0	76	87	0	217	34	12	20	32	1.90
20899509--20899562	23	2.3	23	80	3	63	44	3	3	48	1.38
20899548--20899580	17	1.9	17	100	0	66	36	0	9	54	1.32
20899627--20899688	14	4.8	12	81	15	70	41	24	16	17	1.89
20899627--20899690	27	2.4	27	86	2	94	42	23	15	18	1.89
20899746--20899776	15	2.1	15	100	0	62	19	54	12	12	1.70
20900228--20900288	7	9.3	7	75	13	58	49	1	3	45	1.28
20900227--20900286	13	4.2	13	70	29	50	48	1	3	46	1.28
20901425--20901486	30	2.0	31	87	3	90	41	22	1	33	1.64
20901488--20901653	60	2.8	59	88	2	246	31	28	4	34	1.78
20907433--20907492	21	2.9	21	74	18	61	36	5	5	53	1.45
20908337--20908852	262	2.0	257	82	4	626	26	14	11	47	1.78
20908820--20908872	23	2.4	22	82	14	72	41	16	0	41	1.49
20910077--20910134	29	2.0	29	82	0	71	56	1	10	31	1.43
20912646--20912832	59	3.2	60	83	4	218	25	14	12	47	1.80
20913040--20913161	31	4.0	31	75	16	121	45	10	16	27	1.80
20914391--20914425	18	1.9	18	94	0	61	14	20	22	42	1.88
20915625--20915651	3	9.0	3	100	0	54	33	0	0	66	0.92
20916449--20916480	16	1.9	17	93	6	57	37	12	0	50	1.41
20926224--20926268	3	15.0	3	100	0	90	66	0	33	0	0.92
20930106--20930256	72	2.1	72	80	3	160	26	19	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20930156--20930342	73	2.6	72	81	2	205	24	20	32	22	1.98
20931075--20931141	29	2.4	27	80	12	64	53	0	31	14	1.42
20932446--20932478	11	2.8	12	86	13	50	51	3	0	45	1.16
20932662--20932707	23	2.0	23	83	8	58	71	6	0	21	1.08
20933180--20933218	20	2.0	20	89	0	60	71	2	0	25	0.98
20939108--20939188	38	2.1	38	97	0	153	45	25	6	22	1.75
20943424--20943476	26	2.0	26	100	0	106	28	11	26	33	1.91
20949859--20949897	2	19.5	2	100	0	78	51	0	48	0	1.00
20953581--20953992	57	7.2	55	83	7	310	34	2	29	33	1.72
20953583--20953992	29	14.3	29	69	21	194	34	2	29	33	1.72
20953597--20954033	115	3.8	113	86	4	572	33	2	29	33	1.73
20953581--20953991	58	7.2	56	82	9	431	34	2	29	33	1.72
20955943--20956008	6	11.7	6	70	12	50	56	3	1	39	1.24
20955943--20955998	11	4.9	11	76	10	51	55	3	1	39	1.28
20955945--20955981	17	2.2	17	95	0	65	54	5	2	37	1.38
20955974--20956017	17	2.6	18	85	10	65	61	4	0	34	1.16
20956276--20956447	91	1.9	91	98	0	335	30	17	17	34	1.93
20956365--20956675	38	8.1	38	71	14	230	32	18	15	33	1.92
20956365--20956675	76	4.1	76	93	0	514	32	18	15	33	1.92
20956276--20956840	152	3.4	156	86	10	690	31	17	15	34	1.92
20956594--20956847	85	2.9	88	86	7	356	31	17	14	35	1.91
20956692--20956830	40	3.4	38	75	20	136	33	17	12	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20957028--20957129	50	2.0	51	81	9	120	13	26	22	37	1.92
20958402--20958500	18	5.5	18	78	16	107	1	16	0	82	0.72
20958404--20958500	42	2.3	40	86	13	126	1	16	0	82	0.73
20963852--20964310	58	7.9	59	80	7	528	34	3	28	33	1.74
20963820--20964310	116	4.2	116	88	3	677	34	3	29	33	1.75
20966287--20966330	17	2.6	18	85	10	65	61	4	0	34	1.16
20974529--20974605	39	1.9	41	89	5	122	27	10	3	58	1.49
20974697--20974739	18	2.4	18	84	11	61	67	2	0	30	1.03
20975554--20975602	20	2.2	21	79	13	55	65	4	4	26	1.29
20976081--20976118	3	13.0	3	94	5	69	68	0	0	31	0.90
20983703--20983750	25	1.9	25	84	16	64	52	4	2	41	1.32
20991590--20991926	58	5.8	58	82	8	368	35	1	29	33	1.68
20991678--20991807	29	4.5	28	70	16	88	36	0	27	34	1.63
20991590--20991925	115	2.9	115	81	10	348	35	1	28	33	1.68
20993061--20993093	12	2.8	12	86	13	50	33	3	3	60	1.27
20993724--20993758	17	2.1	17	94	5	63	28	5	17	48	1.69
20993770--20993813	17	2.6	16	80	19	54	50	2	0	47	1.13
20994158--20994595	201	2.2	200	89	2	648	19	23	21	36	1.95
20994451--20994709	116	2.2	116	83	4	328	20	21	21	37	1.95
21007044--21007133	28	3.1	28	68	12	74	40	1	26	32	1.64
21006782--21007205	58	7.4	58	78	9	345	35	2	28	33	1.72
21009059--21009102	17	2.7	15	80	19	52	50	2	4	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21009863--21009892	15	1.9	16	93	6	53	20	0	26	53	1.46
21012689--21012733	20	2.2	20	84	7	56	31	13	2	53	1.52
21023692--21023775	39	2.2	38	87	10	118	39	20	20	20	1.93
21025311--21025447	22	6.2	22	70	13	86	67	20	2	8	1.30
21025312--21025380	11	6.4	11	74	14	54	69	23	1	5	1.18
21025354--21025458	33	3.2	33	79	4	122	68	18	3	9	1.32
21025311--21025416	44	2.4	43	84	7	126	68	20	2	7	1.27
21025493--21025535	19	2.3	19	80	8	52	72	18	4	4	1.20
21026165--21026235	29	2.3	32	83	9	94	53	5	1	39	1.33
21026158--21026232	30	2.4	33	82	10	95	56	5	1	37	1.31
21026218--21026260	17	2.6	16	80	16	52	65	2	0	32	1.06
21027474--21027539	6	11.3	6	80	15	68	42	1	1	54	1.18
21027474--21027539	20	3.4	20	83	10	84	42	1	1	54	1.18
21029609--21029900	30	9.7	30	85	4	376	38	25	2	34	1.69
21029609--21029896	89	3.2	88	89	5	416	38	23	2	34	1.68
21029882--21030260	59	6.4	59	89	1	562	30	28	6	35	1.81
21029879--21030258	29	12.9	27	65	16	114	30	29	6	34	1.81
21042567--21042744	31	5.4	31	68	15	115	36	17	20	25	1.94
21042377--21042856	141	3.5	138	90	4	713	35	16	21	26	1.95
21042397--21042856	68	6.7	68	90	3	681	35	16	21	26	1.95
21043214--21043281	6	11.3	6	80	12	77	42	1	1	54	1.18
21043205--21043278	17	4.6	16	83	11	89	39	1	1	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21043220--21043279	31	1.9	31	93	0	102	41	1	1	55	1.20
21045378--21045529	30	5.0	29	85	8	189	38	25	3	32	1.72
21045378--21045530	61	2.5	61	84	10	199	37	25	3	33	1.72
21045502--21045720	29	7.5	27	65	15	89	31	26	5	37	1.78
21045502--21045753	59	4.3	59	86	1	357	30	27	5	36	1.79
21048825--21048878	17	2.9	18	83	10	65	42	1	0	55	1.10
21060119--21060199	40	2.0	40	88	4	119	34	3	7	54	1.46
21070056--21070153	23	4.2	22	73	12	79	11	27	18	42	1.84
21070167--21070231	25	2.8	22	76	15	67	12	27	18	41	1.86
21070070--21070231	87	1.9	87	83	5	211	13	25	17	43	1.86
21070164--21070246	22	3.6	21	71	21	60	13	27	18	40	1.87
21073475--21073522	19	2.6	17	78	18	51	35	8	2	54	1.42
21074602--21074648	16	2.9	16	84	12	53	55	0	44	0	0.99
21074602--21074647	25	1.9	23	86	8	65	56	0	43	0	0.99
21075065--21075459	30	13.2	30	75	7	268	36	24	3	36	1.71
21075293--21075476	89	2.1	89	85	3	226	35	25	2	36	1.68
21075431--21075535	53	2.0	53	83	3	131	35	23	2	38	1.70
21075544--21075598	28	1.9	29	92	3	94	25	21	9	43	1.82
21075543--21075604	29	2.2	28	85	2	88	22	20	8	48	1.76
21075877--21076473	323	1.8	323	85	2	840	32	17	14	34	1.91
21079178--21079219	16	2.7	15	86	13	59	40	2	0	57	1.12
21084997--21085059	27	2.2	29	81	10	69	28	4	1	65	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21089695--21089732	5	7.4	5	94	5	67	78	0	21	0	0.74
21094289--21094319	16	1.9	16	100	0	62	48	0	0	51	1.00
21096129--21096205	28	2.7	29	76	13	77	35	5	27	32	1.79
21096188--21096353	29	5.7	29	75	13	119	37	2	24	34	1.69
21096211--21096361	29	5.1	29	75	13	130	36	1	22	39	1.63
21096180--21096364	59	3.2	59	75	10	191	37	2	22	37	1.67
21098210--21098248	3	13.3	3	94	5	71	69	0	0	30	0.89
21099298--21099349	7	7.7	7	79	16	65	32	25	25	17	1.97
21099298--21099355	20	2.9	20	94	0	107	34	24	24	17	1.96
21099282--21099355	13	5.6	13	81	12	71	39	21	21	17	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171