genome.fa.s3.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  151  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45467923--45468073	59	2.6	58	74	14	155	37	4	23	33	1.76
45467922--45468102	89	2.1	87	84	6	231	38	4	22	34	1.74
45469619--45469699	26	3.1	26	77	19	96	24	11	23	40	1.87
45470053--45470097	17	2.6	18	86	6	58	42	0	2	55	1.12
45470049--45470099	23	2.2	24	86	6	70	41	0	1	56	1.10
45470480--45471709	200	6.2	200	90	1	1841	19	22	21	36	1.95
45483902--45484277	30	12.8	28	70	17	178	35	4	27	32	1.76
45483935--45484148	59	3.7	58	86	4	304	33	3	31	31	1.74
45483912--45484188	29	9.5	30	68	21	119	34	3	28	33	1.74
45484051--45484278	89	2.6	88	83	6	248	37	4	27	30	1.78
45484126--45484277	59	2.6	58	76	16	166	38	5	24	32	1.78
45484265--45484321	29	1.9	30	85	3	80	38	0	19	42	1.51
45486182--45486227	23	2.0	23	83	8	58	34	2	4	58	1.30
45486195--45486239	17	2.6	17	89	0	63	40	0	2	57	1.11
45486191--45486239	23	2.2	22	88	3	71	38	0	2	59	1.09
45490914--45490947	13	2.4	15	90	9	54	47	11	8	32	1.71
45495894--45495928	14	2.4	14	90	4	52	2	11	8	77	1.10
45499778--45499811	16	2.1	17	88	5	52	55	5	0	38	1.24
45500017--45500077	18	3.4	18	69	0	50	47	1	3	47	1.28
45502649--45502690	18	2.5	18	81	11	54	33	0	4	61	1.17
45511722--45511973	72	3.5	72	92	1	418	23	5	15	55	1.60
45513679--45513708	15	2.1	15	93	6	53	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45528269--45528485	79	2.8	78	85	2	303	20	17	27	35	1.95
45528526--45528736	78	2.6	81	80	5	207	23	17	24	34	1.96
45528229--45528833	262	2.3	258	83	5	763	23	18	25	32	1.97
45547080--45547822	76	9.8	76	92	0	1150	34	15	18	31	1.93
45548116--45548189	37	2.0	37	89	5	114	41	4	0	54	1.19
45548118--45548192	31	2.5	29	87	8	114	42	4	0	53	1.19
45548109--45548195	17	5.0	17	80	12	88	42	3	1	52	1.25
45548118--45548223	6	17.2	6	75	15	92	48	4	0	47	1.23
45548118--45548224	11	8.7	12	74	16	58	48	4	0	46	1.23
45548943--45549037	6	17.0	6	71	14	78	42	0	2	55	1.11
45548950--45549026	17	4.6	18	76	15	67	38	0	2	58	1.12
45548938--45549035	27	3.5	27	81	9	108	39	0	2	58	1.10
45548938--45549037	11	9.0	11	73	14	80	41	0	2	57	1.10
45549774--45549829	24	2.3	24	84	6	69	55	7	7	30	1.54
45550839--45551366	89	6.0	89	85	5	676	39	21	2	35	1.69
45550841--45551369	118	4.5	120	89	2	698	39	21	2	35	1.69
45550841--45551369	30	17.9	30	85	4	648	39	21	2	35	1.69
45553509--45553578	29	2.4	29	83	2	88	38	18	5	37	1.75
45553558--45553812	59	4.4	59	87	4	347	34	30	1	32	1.69
45553553--45553787	115	2.0	117	88	4	350	34	32	1	31	1.68
45553650--45553816	29	5.7	29	68	13	99	34	32	1	31	1.68
45553709--45553872	88	1.9	88	88	2	249	34	31	2	31	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45553797--45554054	59	4.4	58	87	3	356	34	31	1	33	1.67
45553709--45553899	88	2.2	88	85	6	246	34	31	2	32	1.70
45553711--45553965	29	8.7	28	67	11	84	33	31	1	32	1.69
45553799--45554054	118	2.2	117	90	3	399	33	30	1	33	1.68
45553593--45554017	206	2.1	202	88	4	622	34	31	1	32	1.68
45553566--45553936	88	4.2	84	69	15	200	33	31	1	32	1.69
45553650--45553958	147	2.1	147	86	3	417	33	31	1	33	1.68
45553835--45554089	59	4.4	57	77	11	230	32	31	3	32	1.75
45555242--45555286	12	4.2	11	74	25	51	71	2	0	26	0.98
45555994--45556121	21	5.9	21	75	17	95	68	20	3	7	1.28
45556008--45556119	12	8.8	12	69	14	73	69	19	3	7	1.27
45556008--45556121	24	5.0	23	73	11	94	69	20	3	7	1.27
45556116--45556185	18	3.8	18	81	7	70	74	12	5	7	1.21
45556010--45556139	66	2.0	67	81	7	158	69	19	4	6	1.30
45558111--45558152	18	2.3	18	88	8	59	57	2	0	40	1.12
45568656--45568709	24	2.2	25	86	3	74	50	3	0	46	1.19
45568657--45568709	25	2.2	24	86	3	70	50	3	0	45	1.19
45570877--45570932	28	2.0	27	89	3	85	41	1	3	53	1.29
45571671--45571713	3	14.0	3	80	4	50	62	2	2	32	1.20
45572771--45572891	30	4.1	30	80	13	126	36	27	1	34	1.67
45572801--45572981	59	3.1	58	81	8	190	32	25	2	39	1.70
45572809--45573013	59	3.5	57	78	7	182	33	23	3	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45583151--45583243	30	3.1	30	68	18	77	37	3	26	32	1.73
45583954--45583987	15	2.3	15	89	0	50	32	2	0	64	1.08
45584380--45584426	12	4.0	12	80	5	60	17	17	14	51	1.77
45584382--45584426	23	1.9	24	86	4	65	15	17	13	53	1.73
45586080--45586117	7	5.4	7	96	0	58	0	5	7	86	0.69
45587036--45587070	17	2.1	17	94	0	61	25	5	0	68	1.11
45587061--45587119	31	1.9	30	83	10	75	42	6	3	47	1.46
45588749--45588796	20	2.6	18	75	18	53	52	2	16	29	1.56
45589409--45589449	20	2.2	20	83	12	52	41	2	0	56	1.13
45591060--45591093	2	17.0	2	100	0	68	50	0	0	50	1.00
45596212--45596244	15	2.2	15	89	10	50	30	0	3	66	1.06
45596687--45596773	38	2.2	40	80	11	110	60	4	3	31	1.33
45600727--45600751	7	3.6	7	100	0	50	12	0	28	60	1.32
45605634--45605665	16	2.0	16	93	0	55	43	6	9	40	1.62
45608015--45608039	4	6.2	4	100	0	50	24	0	0	76	0.80
45611510--45611579	31	2.2	30	78	12	70	62	7	12	17	1.51
45612750--45612791	21	2.0	21	90	0	66	26	16	40	16	1.90
45615418--45615450	15	2.1	16	88	5	50	51	0	0	48	1.00
45618069--45618152	37	2.2	38	82	2	98	38	14	4	42	1.66
45619483--45619547	31	2.1	32	88	2	96	38	18	12	30	1.88
45621625--45621813	105	1.8	105	94	0	333	25	34	17	22	1.96
45621726--45621847	63	1.9	63	81	3	147	25	34	16	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45622190--45622461	63	4.3	63	71	9	205	28	31	17	22	1.97
45622064--45622493	189	2.3	189	86	1	576	28	33	17	20	1.95
45630369--45630430	17	3.9	15	76	18	54	64	0	1	33	1.03
45630379--45630421	22	1.9	22	85	4	59	65	0	2	32	1.06
45630369--45630432	32	2.0	32	81	9	76	65	0	1	32	1.02
45631395--45631481	39	2.2	39	79	4	95	20	40	21	17	1.92
45632124--45632262	28	5.0	28	80	3	154	22	25	16	35	1.95
45632235--45632391	79	2.0	79	98	0	305	40	16	9	33	1.81
45633292--45633349	17	3.3	18	79	18	68	36	8	0	55	1.31
45633400--45633434	8	4.2	8	96	3	61	25	0	2	71	1.00
45640081--45640129	22	2.2	22	82	10	55	28	6	0	65	1.16
45656055--45656090	18	2.0	18	100	0	72	16	16	11	55	1.68
45661071--45661429	59	6.1	58	84	6	395	33	2	30	33	1.71
45661032--45661465	30	14.8	30	68	21	167	35	2	28	33	1.73
45661088--45661430	118	2.9	118	87	3	451	33	2	31	32	1.72
45661397--45661500	30	3.4	29	79	11	102	36	2	20	40	1.67
45663526--45663584	6	9.8	6	73	14	50	55	1	3	38	1.26
45663541--45663568	14	2.0	14	100	0	56	57	0	7	35	1.26
45664423--45664447	13	1.9	13	100	0	50	60	0	0	40	0.97
45667741--45667826	28	3.2	27	87	6	86	59	24	2	13	1.47
45667755--45667826	13	5.3	14	69	15	53	59	20	2	16	1.49
45667777--45667825	14	3.5	14	72	10	55	57	22	4	16	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45667753--45667833	28	3.0	28	94	5	141	56	22	2	18	1.53
45668897--45668925	15	1.9	15	100	0	58	41	6	6	44	1.58
45670647--45670722	36	2.2	35	83	4	100	39	15	7	36	1.77
45670967--45671002	18	2.0	18	94	0	63	52	5	11	30	1.59
45672985--45673028	2	23.0	2	81	9	56	47	0	0	52	1.00
45674192--45674504	29	10.8	29	79	9	259	35	26	1	35	1.68
45674167--45674495	86	3.8	86	77	9	283	35	26	2	35	1.69
45675457--45675497	3	13.7	3	100	0	82	34	0	0	65	0.93
45678435--45678509	27	2.7	27	83	4	78	30	10	8	50	1.66
45679274--45679314	18	2.3	19	87	8	59	68	2	4	24	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171