genome.fa.s3.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  139  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42856167--42856218	24	2.2	24	79	3	61	46	1	0	51	1.12
42856623--42856674	27	2.0	25	85	11	68	42	0	0	57	0.98
42858480--42858513	9	4.0	8	88	11	50	29	0	0	70	0.87
42862953--42863003	21	2.4	21	93	0	84	31	29	13	25	1.94
42864606--42864795	39	4.8	38	81	3	164	27	18	17	36	1.93
42864585--42864795	80	2.7	78	78	4	210	27	18	17	36	1.93
42865982--42866034	24	2.2	24	86	0	70	33	22	20	22	1.97
42865991--42866073	24	3.5	24	86	0	121	34	24	18	22	1.96
42868088--42868112	13	1.9	13	100	0	50	4	32	32	32	1.76
42869827--42869858	15	2.0	17	88	11	50	65	0	0	34	0.93
42870242--42870319	31	2.5	31	76	13	90	25	16	10	47	1.78
42870558--42870694	57	2.4	56	81	2	159	44	12	17	25	1.84
42873423--42873466	12	3.8	12	93	3	72	54	0	0	45	0.99
42873424--42873474	24	2.2	23	85	3	66	58	1	0	39	1.09
42873966--42874029	28	2.3	28	91	0	110	45	4	7	42	1.54
42874858--42874919	29	2.2	28	88	2	88	43	14	19	22	1.87
42874870--42874930	28	2.1	29	87	3	88	45	13	18	22	1.83
42875130--42875299	59	2.9	58	78	6	164	52	10	11	25	1.68
42878862--42879015	30	5.3	28	72	16	125	33	3	31	31	1.74
42878850--42879041	59	3.3	58	86	2	269	34	2	30	32	1.72
42878850--42879041	30	6.6	26	69	24	93	34	2	30	32	1.72
42879415--42879460	24	1.9	24	86	8	67	30	15	0	54	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42879419--42879468	24	2.0	24	84	7	64	30	20	2	48	1.61
42879739--42879822	3	26.7	3	71	9	51	41	1	1	55	1.15
42879740--42879809	7	10.3	7	77	14	67	42	1	1	54	1.18
42879739--42879815	19	4.2	19	75	20	65	42	1	1	54	1.16
42879802--42879831	15	2.0	15	93	0	51	36	0	3	60	1.14
42880521--42880596	6	12.8	6	72	18	61	55	1	1	42	1.16
42880526--42880575	25	2.0	25	96	0	91	54	0	2	44	1.11
42880521--42880596	17	4.6	17	73	14	70	55	1	1	42	1.16
42880529--42880574	11	3.9	11	78	15	56	56	0	2	41	1.11
42880504--42880599	11	8.7	11	68	12	54	51	1	1	46	1.14
42880529--42880599	25	2.6	28	82	6	85	54	1	1	42	1.17
42880890--42881270	76	5.0	76	95	1	665	32	18	15	32	1.93
42881068--42881840	190	4.1	190	76	12	868	32	19	15	32	1.93
42881220--42881977	76	10.0	74	87	6	759	32	19	15	32	1.93
42881182--42881966	152	5.2	152	84	8	845	32	19	15	32	1.93
42881068--42881917	38	22.4	36	64	21	219	32	19	15	32	1.93
42893859--42894087	29	7.8	29	71	13	157	33	3	31	32	1.73
42893825--42894113	58	5.0	58	87	4	386	33	3	30	32	1.75
42893897--42894122	29	7.8	28	72	19	142	34	1	30	33	1.68
42894073--42894128	28	2.0	29	86	6	80	32	1	32	33	1.69
42894880--42894926	24	1.9	25	86	4	69	31	14	0	53	1.42
42894885--42894934	24	2.0	24	84	7	64	30	20	2	48	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42895204--42895262	13	4.5	13	71	14	50	44	1	0	54	1.10
42895204--42895262	6	9.0	7	80	10	63	44	1	0	54	1.10
42895204--42895279	19	4.0	20	81	10	70	43	2	1	52	1.23
42895985--42896060	6	12.8	6	70	18	52	55	2	1	40	1.22
42895990--42896039	25	2.0	25	92	0	82	54	2	2	42	1.23
42896015--42896060	17	2.7	17	86	0	65	56	2	2	39	1.24
42895993--42896063	25	2.6	28	80	6	76	54	2	1	40	1.23
42904904--42904973	25	2.9	24	85	4	95	28	7	5	58	1.48
42904915--42904990	24	3.1	24	80	1	71	30	9	6	53	1.58
42906220--42906267	25	1.9	25	83	8	62	62	6	4	27	1.38
42907717--42908035	82	3.9	82	79	10	314	23	25	27	24	2.00
42907717--42908035	42	7.8	40	78	6	284	23	25	27	24	2.00
42907717--42908036	164	2.0	163	81	6	380	23	25	27	24	2.00
42908160--42908306	44	3.3	44	85	7	183	12	47	10	29	1.75
42908220--42908287	22	3.2	20	70	29	59	10	54	4	30	1.54
42909008--42909077	21	3.2	21	64	18	52	21	12	38	27	1.90
42908994--42909084	45	2.0	45	97	0	173	23	10	36	29	1.89
42914551--42914620	5	14.4	5	72	15	58	72	2	20	4	1.14
42914564--42914624	29	2.1	29	93	6	106	72	1	22	3	1.09
42914557--42914634	10	8.3	9	78	17	79	73	2	21	2	1.08
42926291--42926364	23	3.2	23	77	17	82	41	1	0	56	1.07
42926290--42926363	24	3.2	24	78	16	84	40	1	0	58	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42926324--42926379	23	2.4	23	79	8	69	44	3	0	51	1.18
42927069--42927111	18	2.5	17	82	14	52	46	6	13	32	1.71
42929253--42929327	37	2.0	37	100	0	150	17	24	10	48	1.79
42929489--42929650	50	3.2	50	74	10	168	20	20	27	30	1.98
42942084--42942117	16	2.1	16	88	0	50	73	8	2	14	1.19
42942255--42942499	30	8.2	30	85	7	311	35	4	22	38	1.73
42943624--42943663	20	2.0	20	100	0	80	75	0	0	25	0.81
42943708--42943737	12	2.4	12	94	5	51	20	0	0	80	0.72
42943706--42943748	17	2.5	16	85	11	50	23	2	0	74	0.93
42944532--42944744	118	1.8	118	83	8	290	27	15	24	32	1.95
42944511--42944704	79	2.5	79	84	0	246	27	18	22	31	1.97
42944491--42944746	40	6.5	40	76	8	238	27	15	23	32	1.95
42954464--42954596	66	2.0	66	88	0	194	30	25	13	30	1.94
42957000--42957046	17	2.7	18	83	6	53	19	2	6	72	1.17
42957049--42957094	18	2.6	18	96	3	85	69	8	4	17	1.31
42960222--42960276	21	2.7	21	77	8	60	36	1	0	61	1.06
42960304--42960528	91	2.5	93	84	8	279	29	8	20	40	1.83
42961822--42961878	23	2.5	22	81	13	62	52	5	1	40	1.34
42961916--42961969	19	2.9	18	91	5	81	27	0	1	70	0.98
42962265--42962346	6	14.0	6	72	10	62	41	2	7	48	1.44
42962279--42962332	17	3.5	17	76	23	73	40	0	9	50	1.35
42962265--42962332	29	2.3	29	97	0	127	41	1	8	48	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42962323--42962362	18	2.3	18	86	4	55	45	2	0	52	1.14
42962361--42962397	15	2.6	15	91	8	60	54	10	5	29	1.57
42964241--42964451	59	3.7	57	84	4	230	35	26	3	35	1.74
42964240--42964447	30	7.2	28	72	15	140	35	26	3	34	1.75
42964240--42964427	28	6.6	29	74	13	147	33	26	4	36	1.76
42964291--42964461	29	5.9	28	74	11	130	35	27	2	33	1.72
42964480--42964577	28	3.4	28	69	18	76	30	24	4	40	1.74
42964413--42964593	58	3.1	57	77	11	172	34	24	5	35	1.79
42966412--42966521	40	2.8	40	88	1	168	40	17	20	21	1.91
42966560--42966693	42	3.2	42	82	6	162	28	18	23	29	1.98
42969236--42969430	58	3.4	55	72	14	169	36	4	29	29	1.77
42969407--42969790	30	12.8	30	83	3	400	36	2	21	39	1.68
42969407--42969789	120	3.2	119	88	4	556	36	2	21	39	1.68
42969404--42969790	90	4.3	91	82	5	466	36	2	21	39	1.68
42971784--42971863	6	13.3	6	78	15	85	52	0	2	45	1.14
42971799--42971866	31	2.1	32	89	10	104	57	0	2	39	1.14
42971793--42971876	37	2.2	38	85	10	111	55	1	2	40	1.20
42971784--42971866	17	5.1	16	85	11	107	54	0	2	43	1.13
42972287--42972617	37	9.4	37	67	17	211	31	19	13	34	1.91
42972280--42972624	68	4.9	68	86	5	474	30	20	14	34	1.92
42972247--42972620	137	2.6	142	87	7	555	31	19	14	34	1.92
42972522--42972637	37	3.0	40	68	23	120	28	20	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42972485--42972637	76	2.0	76	93	0	261	29	19	15	35	1.92
42983378--42983761	30	12.8	30	80	4	380	38	3	20	38	1.71
42985766--42985832	33	2.0	33	86	11	93	52	0	1	46	1.09
42985766--42985829	6	11.3	6	84	15	84	50	0	1	48	1.10
42985768--42985821	27	2.0	27	89	7	83	50	0	1	48	1.11
42985769--42985842	21	3.4	22	78	9	80	52	1	1	44	1.17
42989737--42990093	41	8.7	41	77	7	225	34	20	26	18	1.96
42989798--42990093	123	2.4	122	82	1	342	33	20	26	18	1.96
42989773--42990074	41	7.4	41	81	2	306	33	20	26	19	1.97
42994163--42994476	43	7.3	43	83	6	377	29	25	20	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171