genome.fa.s3.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  128  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40446042--40446198	30	5.3	30	66	17	103	33	8	29	28	1.87
40446189--40446297	30	3.6	30	97	0	209	35	3	23	36	1.73
40446392--40446708	161	2.0	162	85	4	435	44	13	16	25	1.84
40446443--40446792	161	2.2	160	80	6	386	47	13	16	22	1.81
40447457--40447494	15	2.5	15	91	0	58	28	7	2	60	1.38
40447461--40447516	24	2.3	24	87	6	78	32	7	5	55	1.50
40448194--40448264	17	4.0	18	78	9	67	43	2	1	52	1.24
40448203--40448280	6	13.2	6	74	12	72	50	2	1	46	1.23
40448203--40448294	17	5.5	17	78	8	82	48	4	2	44	1.34
40448593--40449273	39	19.0	39	75	18	535	27	20	17	33	1.96
40448651--40448897	31	7.4	31	69	19	167	26	20	18	35	1.95
40448612--40449166	68	7.9	68	87	8	740	27	20	17	33	1.96
40448776--40449273	107	4.6	109	78	13	523	27	21	18	33	1.96
40448603--40449273	183	3.7	179	79	12	772	27	21	17	33	1.96
40449145--40449278	68	1.9	69	93	3	234	26	20	20	32	1.97
40461188--40461409	30	7.5	31	66	9	124	35	5	27	31	1.81
40461188--40461436	59	4.2	59	88	3	351	34	6	26	31	1.82
40461418--40461556	30	4.6	30	95	0	251	35	3	23	36	1.73
40461659--40461967	161	1.9	161	86	3	444	45	13	15	24	1.83
40461702--40462051	161	2.2	157	79	9	384	48	13	15	22	1.80
40462712--40462749	15	2.5	15	91	0	58	28	7	2	60	1.38
40462716--40462771	24	2.3	24	87	6	78	32	7	5	55	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40463454--40463524	17	4.0	18	78	9	67	43	2	1	52	1.24
40463463--40463540	6	13.2	6	74	12	72	50	2	1	46	1.23
40463463--40463554	17	5.5	17	78	8	82	48	4	2	44	1.34
40463902--40463972	30	2.5	28	80	11	72	40	16	5	36	1.73
40463957--40464330	59	6.4	59	86	3	504	31	29	4	34	1.76
40464090--40464301	29	7.1	30	66	21	83	32	31	2	33	1.73
40463978--40464330	119	3.0	117	89	2	539	31	30	3	33	1.76
40463987--40464330	178	1.9	177	89	0	526	31	30	4	34	1.76
40465549--40465598	23	2.2	23	89	7	75	56	2	6	36	1.36
40465531--40465599	17	4.0	17	79	5	77	56	1	4	37	1.28
40465940--40465979	21	1.9	21	94	0	71	65	10	0	25	1.24
40465940--40465988	10	5.1	10	80	9	50	67	8	0	24	1.18
40465980--40466046	29	2.3	29	79	5	82	55	2	4	37	1.36
40466009--40466068	24	2.6	22	82	10	68	56	3	1	38	1.26
40467475--40467501	12	2.2	12	100	0	54	37	7	18	37	1.79
40470195--40470224	10	3.0	10	90	0	51	40	3	10	46	1.54
40472451--40475307	627	4.6	627	95	1	4912	33	15	14	36	1.89
40475783--40475814	16	2.0	16	93	0	55	40	0	6	53	1.26
40476614--40476661	13	3.8	12	81	8	60	70	0	0	29	0.87
40476619--40476671	26	2.1	25	82	3	61	67	1	0	30	1.01
40478102--40478166	10	6.7	10	75	7	53	55	1	6	36	1.34
40478292--40478353	28	2.2	28	83	8	74	33	1	6	58	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40483309--40483352	23	1.9	23	85	0	61	27	6	0	65	1.17
40484165--40484355	29	6.5	28	75	13	152	32	28	3	36	1.73
40484191--40484303	60	1.9	60	87	3	165	31	31	1	34	1.68
40484368--40484593	58	3.9	58	78	2	231	29	26	9	34	1.87
40484368--40484593	29	7.8	29	74	14	146	29	26	9	34	1.87
40484902--40484926	10	2.5	10	100	0	50	16	20	8	56	1.65
40488673--40488718	17	2.7	17	89	0	74	39	0	2	58	1.10
40491264--40491457	97	2.0	97	83	6	241	35	14	19	30	1.91
40491837--40492177	29	11.6	30	79	9	271	32	3	26	37	1.73
40491856--40492177	60	5.5	59	78	8	284	33	2	26	37	1.71
40496869--40497043	36	4.8	38	77	7	166	37	16	21	24	1.93
40496891--40497043	38	4.2	37	75	7	134	37	16	20	24	1.93
40496891--40497043	73	2.1	72	86	2	216	37	16	20	24	1.93
40498168--40498492	126	2.6	126	86	0	443	30	21	20	28	1.98
40498492--40498884	141	2.8	139	83	4	452	32	22	17	27	1.96
40500061--40500217	28	5.5	28	67	21	78	38	5	22	33	1.78
40500061--40500218	58	2.7	58	79	13	157	37	5	22	33	1.78
40500199--40500377	29	6.2	29	76	8	143	34	5	25	34	1.78
40500199--40500332	57	2.3	58	83	1	162	35	4	23	36	1.75
40502259--40502322	17	3.8	17	83	8	85	53	4	0	42	1.22
40502659--40503040	206	1.9	206	91	0	629	23	23	18	34	1.96
40504111--40504221	54	2.1	54	88	3	163	12	21	13	52	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40515366--40515395	2	15.0	2	100	0	60	50	0	0	50	1.00
40516234--40516332	30	3.3	29	70	18	78	26	14	14	45	1.82
40522537--40522573	18	2.1	18	90	10	58	64	5	0	29	1.15
40523141--40523176	18	1.9	19	88	5	56	30	0	2	66	1.06
40524475--40524533	10	6.0	10	80	4	66	55	0	5	38	1.22
40524687--40524734	17	2.9	16	81	9	60	27	2	6	64	1.28
40530963--40531375	30	14.1	29	72	14	156	36	3	24	36	1.72
40531005--40531397	30	13.4	30	74	12	219	35	3	24	37	1.71
40530947--40531108	59	2.8	58	82	8	161	39	4	21	34	1.73
40531134--40531383	59	4.3	57	80	11	249	34	2	25	37	1.69
40532414--40532468	9	5.7	10	76	21	55	34	1	1	61	1.17
40532436--40532470	18	1.9	18	100	0	70	34	0	2	62	1.10
40532512--40532560	22	2.3	22	82	3	55	59	2	6	32	1.34
40533131--40533187	30	1.9	30	89	3	89	10	5	36	47	1.61
40533292--40533325	12	2.8	12	90	0	59	67	0	0	32	0.91
40533752--40533874	49	2.5	48	81	3	131	26	26	13	34	1.93
40533654--40533951	134	2.2	134	84	2	366	24	24	14	36	1.93
40533888--40534254	172	2.1	172	90	1	574	22	22	17	38	1.93
40534060--40534612	205	2.7	205	86	3	732	22	22	17	37	1.94
40546758--40547175	30	14.1	29	75	13	216	35	4	24	35	1.75
40546731--40547163	59	7.3	59	77	10	329	34	4	24	36	1.76
40546872--40547160	60	4.9	57	80	8	294	33	3	26	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40546877--40547184	30	10.4	29	80	11	256	33	3	25	36	1.75
40548396--40548444	22	2.3	22	82	3	55	59	2	6	32	1.34
40549175--40549208	6	5.7	6	85	0	50	58	0	0	41	0.98
40551393--40551706	103	3.1	102	89	1	493	37	25	5	31	1.78
40554485--40554519	15	2.3	15	90	9	54	34	17	14	34	1.90
40560838--40560881	14	2.8	17	76	20	58	68	4	0	27	1.09
40560775--40560874	14	7.4	13	73	16	62	68	7	1	24	1.21
40560821--40560881	31	2.0	29	84	6	77	67	4	0	27	1.11
40560925--40560994	26	2.7	25	76	10	70	77	1	2	18	0.97
40560946--40560993	20	2.6	18	86	6	60	77	2	2	18	0.97
40562142--40562509	30	12.4	30	71	14	140	35	4	23	36	1.77
40562142--40562509	59	6.2	60	73	11	219	35	4	23	36	1.77
40562220--40562352	60	2.2	59	85	4	169	35	2	23	39	1.67
40563554--40563603	3	17.0	3	80	12	59	34	0	2	64	1.05
40564233--40564270	16	2.2	19	86	13	55	18	10	18	52	1.73
40564282--40564327	6	8.0	6	83	9	60	50	2	2	45	1.26
40564282--40564352	17	4.2	17	85	3	81	50	4	1	43	1.30
40564282--40564352	34	2.1	34	86	0	97	50	4	1	43	1.30
40564283--40564327	11	3.9	12	85	8	58	51	2	2	44	1.26
40564294--40564337	23	1.9	23	86	9	63	54	4	0	40	1.21
40564647--40565360	209	3.4	209	89	0	1025	22	22	17	36	1.94
40574205--40574246	22	1.9	22	90	0	66	28	14	16	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40575389--40575424	18	1.9	19	88	5	56	61	8	8	22	1.51
40576368--40576513	42	3.2	42	73	19	148	23	17	21	36	1.94
40577912--40578029	41	2.8	40	79	12	114	18	11	36	33	1.88
40577948--40578029	41	2.0	41	90	0	128	18	13	35	32	1.90
40577978--40578175	53	3.7	53	82	1	227	18	16	35	29	1.93
40578774--40578829	29	1.9	29	92	0	94	25	21	14	39	1.91
40584802--40584832	13	2.5	13	94	5	55	29	0	12	58	1.35
40587355--40587587	79	3.0	79	84	4	292	24	16	26	32	1.96
40595820--40595894	30	2.6	29	83	8	98	48	1	1	49	1.18
40595833--40595894	30	2.1	30	90	6	99	51	1	1	45	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171