genome.fa.s3.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  137  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42419311--42419348	19	2.0	20	89	5	60	50	5	2	42	1.39
42418678--42419822	378	3.0	378	91	3	1796	38	9	12	39	1.76
42419691--42419728	19	2.0	20	89	5	60	50	5	2	42	1.39
42423277--42423321	21	2.3	18	85	11	54	33	2	2	62	1.20
42423206--42423350	10	14.8	10	68	24	78	31	2	2	63	1.20
42426390--42426442	26	2.0	26	96	0	97	20	33	18	26	1.96
42431278--42431348	31	2.4	29	88	4	97	39	4	0	56	1.19
42431276--42431346	11	6.5	11	73	15	58	39	4	0	56	1.19
42431325--42431359	17	2.1	17	88	0	52	45	2	0	51	1.16
42431422--42431455	17	2.0	17	100	0	68	41	23	23	11	1.87
42432341--42432390	11	4.4	12	78	12	52	74	2	8	16	1.15
42432341--42432392	23	2.3	22	84	12	70	75	1	7	15	1.12
42433095--42433185	29	3.1	30	84	4	123	37	26	3	32	1.73
42433191--42433288	30	3.3	29	69	19	87	29	30	3	36	1.73
42433182--42433316	59	2.3	59	92	0	225	31	28	2	37	1.72
42433209--42433408	30	6.5	30	66	29	93	30	28	3	38	1.73
42433221--42433313	29	3.2	29	67	24	77	29	26	3	40	1.71
42433276--42433354	38	2.1	38	100	0	158	29	27	2	40	1.69
42433217--42433413	97	2.0	97	92	1	324	29	28	3	38	1.74
42433314--42433445	59	2.3	58	88	4	185	28	31	6	34	1.81
42433336--42433438	30	3.5	28	74	11	82	31	28	4	35	1.78
42445599--42445775	31	5.3	31	69	16	122	35	16	20	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42445555--42446210	68	9.0	69	79	13	542	33	16	18	30	1.93
42445541--42446269	76	9.9	75	86	5	749	33	16	18	30	1.94
42445541--42446265	153	4.9	149	87	6	864	33	16	18	30	1.94
42446510--42446580	31	2.4	29	88	4	97	39	4	0	56	1.19
42446508--42446578	11	6.5	11	73	15	58	39	4	0	56	1.19
42446557--42446591	17	2.1	17	88	0	52	45	2	0	51	1.16
42446654--42446687	17	2.0	17	100	0	68	41	23	23	11	1.87
42447422--42447452	13	2.4	13	94	0	53	6	45	35	12	1.68
42447584--42447633	11	4.4	12	78	12	52	74	2	8	16	1.15
42447584--42447635	23	2.3	22	84	12	70	75	1	7	15	1.12
42448329--42448506	30	6.0	30	84	4	218	38	24	1	35	1.65
42448338--42448529	60	3.2	59	83	5	210	37	26	1	34	1.66
42448540--42448616	29	2.6	30	82	8	88	32	25	1	40	1.64
42451266--42451291	12	2.2	12	100	0	52	69	7	0	23	1.14
42451268--42451347	41	2.0	41	84	0	106	63	10	3	22	1.41
42454810--42454842	17	1.9	17	93	0	57	36	0	0	63	0.95
42457984--42458022	20	1.9	21	89	5	62	74	0	0	25	0.82
42458189--42458218	15	2.1	15	93	6	53	43	0	0	56	0.99
42458464--42458518	20	2.8	20	77	2	58	58	0	0	41	0.98
42458459--42458521	20	3.3	18	76	12	54	53	0	0	46	1.00
42458819--42458852	17	1.9	18	88	5	52	50	0	0	50	1.00
42459326--42459376	18	2.7	19	73	11	52	62	3	0	33	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42459468--42459536	19	3.7	18	71	21	52	59	10	0	30	1.30
42459542--42459574	9	3.7	9	84	15	50	60	6	3	30	1.36
42464147--42464210	33	1.9	33	100	0	128	28	25	25	21	1.99
42467402--42467502	49	2.0	50	92	3	168	47	13	19	18	1.82
42469607--42469658	25	2.1	25	100	0	104	25	11	11	51	1.71
42474734--42474780	22	2.3	21	82	10	62	29	0	6	63	1.19
42475153--42475186	2	17.0	2	100	0	68	50	0	0	50	1.00
42480872--42480925	7	7.7	7	85	0	72	20	20	29	29	1.98
42480872--42480925	21	2.6	21	90	0	90	20	20	29	29	1.98
42481663--42481721	18	3.3	18	78	7	66	20	1	27	50	1.57
42486651--42486679	9	3.2	9	100	0	58	24	10	44	20	1.82
42486879--42486927	24	2.0	24	100	0	98	36	22	12	28	1.90
42490293--42490337	23	2.0	23	86	8	65	24	4	4	66	1.29
42490171--42490979	164	5.0	160	78	7	745	29	11	10	48	1.73
42490234--42490967	327	2.2	325	83	3	900	29	12	9	47	1.73
42490998--42491304	161	1.9	160	87	0	452	27	11	9	51	1.69
42491355--42491942	161	3.7	159	80	7	629	30	10	7	51	1.65
42496585--42496793	28	7.5	28	84	2	143	22	14	23	39	1.91
42496585--42496793	56	3.7	56	79	2	213	22	14	23	39	1.91
42496585--42496793	84	2.5	84	82	1	249	22	14	23	39	1.91
42496728--42496855	28	4.6	28	71	9	73	27	14	25	33	1.94
42498821--42498876	19	2.9	20	82	12	64	62	0	3	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42498799--42498872	39	1.9	38	86	8	105	59	1	2	36	1.20
42498810--42498876	20	3.5	19	78	8	73	59	1	2	35	1.22
42500144--42500171	13	2.2	13	100	0	56	28	0	21	50	1.49
42507773--42507823	25	2.0	26	92	3	86	66	9	7	15	1.43
42512832--42512982	28	5.4	28	76	3	124	40	23	15	20	1.90
42512847--42513026	84	2.1	85	81	3	202	38	24	16	20	1.92
42512962--42513035	29	2.6	28	81	8	78	40	22	14	21	1.90
42515661--42515698	19	2.0	19	94	0	67	18	0	13	68	1.21
42522920--42522944	12	2.1	12	100	0	50	44	24	0	32	1.54
42527007--42527035	10	3.0	10	95	5	51	27	20	0	51	1.47
42527393--42527512	38	3.2	38	92	2	190	34	25	17	22	1.96
42530400--42530435	15	2.4	15	95	0	63	50	5	36	8	1.56
42531528--42531573	24	1.9	24	95	0	83	45	19	6	28	1.75
42535247--42535423	28	6.3	28	74	0	111	18	17	23	40	1.91
42535947--42535999	22	2.4	22	93	0	97	24	7	24	43	1.80
42564396--42564430	15	2.4	14	86	9	52	17	11	5	65	1.43
42573590--42574072	164	2.9	163	82	4	578	29	11	9	49	1.70
42574034--42574139	54	2.0	54	83	7	135	29	9	14	47	1.75
42574231--42574721	166	3.0	163	83	5	621	28	13	10	47	1.75
42574250--42574765	163	3.1	164	81	4	594	29	13	10	46	1.76
42574925--42575347	163	2.6	162	80	4	474	28	11	11	48	1.74
42573586--42575433	693	2.7	687	82	4	2287	29	12	10	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42575318--42575607	144	2.0	144	81	4	343	28	14	10	47	1.76
42579414--42579492	26	2.8	27	76	16	81	60	0	3	35	1.15
42583997--42584038	21	2.1	21	86	8	61	33	4	4	57	1.41
42592179--42592225	13	3.4	14	82	14	53	61	0	0	38	0.96
42594654--42595136	164	2.9	163	82	4	587	29	11	9	49	1.71
42595098--42595203	54	2.0	54	83	7	135	29	9	14	47	1.75
42595295--42595785	166	3.0	163	83	5	603	28	13	10	47	1.75
42595318--42595829	163	3.1	163	81	4	575	29	13	10	46	1.76
42595989--42596411	163	2.6	162	80	4	474	28	11	11	48	1.74
42594650--42596497	693	2.7	687	82	4	2278	29	12	10	47	1.74
42596382--42596671	144	2.0	144	82	4	352	27	14	10	47	1.77
42600591--42600657	27	2.4	28	82	9	84	62	0	4	32	1.15
42603608--42603665	28	2.1	28	87	3	82	62	1	3	32	1.22
42603599--42603628	8	3.6	8	95	4	51	53	3	0	43	1.17
42603607--42603666	27	2.2	26	82	8	75	60	1	3	35	1.23
42604788--42604829	21	2.1	21	86	8	61	33	4	4	57	1.41
42607741--42607842	21	4.7	22	76	12	88	40	0	0	58	1.04
42607757--42607820	9	6.8	9	76	16	51	39	1	0	59	1.07
42607749--42607811	20	3.2	20	84	8	85	36	1	0	61	1.05
42607744--42607824	21	3.8	20	79	12	90	38	1	0	60	1.05
42607740--42607842	30	3.4	31	74	18	101	39	0	0	59	1.04
42607968--42608006	21	1.9	21	94	5	71	30	25	10	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42608263--42608287	13	1.9	13	100	0	50	48	8	16	28	1.74
42613572--42613618	13	3.4	14	82	14	53	61	0	0	38	0.96
42613628--42613682	24	2.3	24	96	3	103	29	23	10	36	1.89
42616067--42616554	164	3.0	164	81	5	574	30	11	9	48	1.71
42616711--42617201	166	3.0	163	84	4	628	28	13	10	47	1.75
42616730--42617245	163	3.1	164	82	3	601	29	13	10	46	1.76
42616067--42617913	692	2.7	690	83	3	2266	29	12	10	47	1.74
42617405--42617827	163	2.6	162	81	4	483	28	11	11	48	1.74
42617798--42618087	144	2.0	144	82	4	352	27	14	10	47	1.77
42621975--42622026	9	5.7	9	83	2	59	59	1	1	36	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171