genome.fa.s3.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  170  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50410061--50410129	34	2.0	34	94	0	120	42	20	10	27	1.84
50417588--50417623	17	2.2	17	90	5	56	58	5	27	8	1.50
50418297--50418351	17	3.2	17	76	19	69	40	10	9	40	1.72
50418283--50418351	34	2.0	34	94	5	122	37	11	7	43	1.69
50427440--50427549	56	2.0	56	96	0	202	30	24	6	39	1.80
50427666--50427704	19	2.0	20	85	9	55	17	0	35	46	1.49
50429312--50429340	3	9.7	3	100	0	58	0	34	0	65	0.93
50433307--50433639	165	2.0	166	96	0	614	27	14	14	43	1.85
50436470--50436506	3	12.3	3	100	0	74	67	0	32	0	0.91
50436407--50436543	73	1.9	73	96	0	256	51	5	30	11	1.62
50447298--50447339	22	1.9	22	90	0	66	45	0	0	54	0.99
50452455--50452517	2	31.5	2	96	0	117	47	0	1	50	1.10
50462394--50462522	42	3.1	42	87	0	168	36	16	24	22	1.94
50464550--50464597	25	1.9	25	95	0	87	33	27	14	25	1.94
50465283--50465328	23	2.0	23	100	0	92	47	13	8	30	1.72
50469270--50469299	16	1.9	16	93	6	53	33	20	0	46	1.51
50474559--50474644	42	2.0	42	90	0	136	36	18	20	24	1.95
50481368--50481425	27	2.1	27	96	0	107	29	20	18	31	1.97
50486884--50487171	24	12.0	24	85	3	375	30	19	20	30	1.97
50491396--50491542	24	6.1	24	93	0	258	26	19	24	29	1.99
50494392--50494458	26	2.6	26	100	0	134	40	2	16	40	1.64
50496388--50496421	16	2.1	16	88	0	50	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50496469--50496538	19	3.8	17	78	16	68	30	0	2	67	1.05
50496517--50496550	16	2.1	17	94	5	61	32	0	0	67	0.91
50505313--50505376	31	2.1	31	84	0	83	32	10	14	42	1.80
50512734--50512759	7	3.7	7	100	0	52	61	0	0	38	0.96
50517516--50517557	15	2.6	16	81	14	50	33	0	7	59	1.25
50517518--50517565	24	2.0	24	88	8	71	31	2	6	60	1.33
50519027--50519085	29	2.0	30	83	9	77	52	10	5	32	1.57
50523248--50523277	14	2.1	14	100	0	60	23	13	20	43	1.86
50523519--50523560	21	2.0	20	86	4	57	30	14	7	47	1.71
50532143--50532175	17	1.9	17	93	0	57	54	3	0	42	1.15
50535198--50535247	15	3.3	15	85	2	64	0	28	0	72	0.86
50535200--50535236	11	3.4	11	84	0	56	0	27	0	72	0.84
50538738--50538793	22	2.5	23	85	8	80	41	21	28	8	1.83
50538782--50538845	27	2.4	26	82	7	83	42	18	21	17	1.89
50540699--50540783	43	2.0	43	80	0	98	32	11	24	30	1.91
50542516--50542554	6	6.5	6	87	0	51	51	0	23	25	1.49
50542520--50542558	12	3.2	12	77	0	51	46	0	28	25	1.53
50542520--50542558	18	2.2	18	90	0	60	46	0	28	25	1.53
50544163--50544202	21	1.9	21	84	0	53	12	7	30	50	1.68
50545870--50545925	26	2.1	27	83	6	69	46	1	7	44	1.41
50551295--50551599	115	2.6	113	89	5	434	50	13	4	31	1.60
50553431--50553491	32	1.9	32	86	0	86	29	6	11	52	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50563938--50563971	12	2.8	12	90	0	50	58	0	23	17	1.38
50563943--50563987	6	7.5	6	84	0	54	48	0	28	22	1.50
50563939--50563987	18	2.7	18	83	0	62	51	0	26	22	1.49
50565415--50565467	11	4.6	11	76	6	52	45	1	0	52	1.11
50565415--50565458	17	2.7	16	82	6	61	40	2	0	56	1.11
50565418--50565495	29	2.7	29	80	5	79	41	2	2	53	1.28
50566324--50566375	3	17.0	3	92	4	86	63	0	1	34	1.06
50567363--50567639	60	4.6	60	87	5	341	38	22	4	34	1.75
50567364--50567652	30	9.6	30	79	4	307	37	23	4	34	1.75
50568706--50568746	21	1.9	22	85	5	57	41	7	12	39	1.70
50572926--50572954	12	2.4	12	100	0	58	62	0	37	0	0.96
50581352--50581382	5	6.0	5	92	7	53	0	19	0	80	0.71
50587353--50587440	36	2.4	36	90	1	122	32	25	19	22	1.97
50587650--50587694	22	2.1	22	88	12	67	55	8	8	26	1.60
50587703--50587744	19	2.2	19	86	0	57	71	16	9	2	1.23
50592726--50592772	20	2.2	22	85	7	62	48	4	2	44	1.34
50592730--50592763	17	2.0	17	88	0	50	50	2	2	44	1.32
50622858--50622915	21	2.8	21	87	7	84	48	10	0	41	1.37
50623274--50623338	30	2.2	30	91	0	103	21	3	15	60	1.49
50627618--50627650	18	1.9	17	88	11	50	18	0	6	75	1.00
50638143--50638205	28	2.2	29	91	2	101	49	0	0	50	1.00
50638218--50638257	6	6.5	6	82	5	53	2	15	2	80	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50638218--50638257	19	2.2	18	86	4	53	2	15	2	80	0.93
50639679--50639728	24	2.0	24	88	3	73	60	0	0	40	0.97
50646863--50646895	15	2.1	17	88	11	52	60	3	9	27	1.42
50648057--50648164	51	2.1	51	82	3	128	37	18	4	39	1.72
50651508--50651549	21	2.0	21	90	0	66	26	21	21	30	1.98
50654627--50654915	52	5.6	52	87	1	411	34	23	15	26	1.94
50656945--50657063	23	5.1	23	76	8	123	42	22	23	11	1.87
50660212--50660270	21	2.8	21	84	7	75	35	27	11	25	1.91
50660234--50660283	21	2.4	21	86	0	64	34	26	12	28	1.92
50661020--50661259	52	4.6	52	89	0	345	35	22	15	27	1.94
50664239--50664317	17	4.6	17	80	0	95	41	1	3	53	1.27
50664268--50664331	23	3.0	22	68	25	57	43	3	3	50	1.33
50666075--50666353	29	9.5	29	73	8	199	30	24	2	42	1.68
50666075--50666353	30	9.5	30	74	9	200	30	24	2	42	1.68
50666043--50666506	59	7.9	58	78	9	367	31	24	2	40	1.70
50666068--50666441	29	12.8	29	68	10	154	31	24	2	41	1.68
50669724--50669850	24	5.4	24	75	7	93	70	18	2	7	1.22
50669724--50669825	12	8.6	12	76	10	93	70	18	2	7	1.24
50669822--50669879	19	3.1	19	92	2	91	74	17	1	6	1.12
50669827--50669880	18	2.9	18	94	2	90	75	16	1	5	1.07
50669827--50669895	18	3.6	19	84	7	86	72	15	2	8	1.21
50672299--50672351	21	2.5	21	84	0	70	41	28	9	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50672980--50673320	52	6.6	52	86	0	430	35	23	15	26	1.94
50678200--50678314	38	3.0	38	88	0	176	19	20	29	30	1.97
50680592--50680642	21	2.5	20	81	9	57	49	1	0	49	1.12
50688500--50688524	13	1.9	13	100	0	50	0	52	0	48	1.00
50690090--50690114	11	2.3	11	100	0	50	0	16	0	84	0.63
50690083--50690114	16	2.0	16	93	0	55	0	18	3	78	0.89
50714980--50715056	29	2.6	29	85	4	91	33	10	10	45	1.72
50715180--50715267	31	2.9	31	79	3	99	37	13	13	35	1.84
50721825--50721870	24	1.9	23	86	8	65	56	6	4	32	1.45
50723512--50723549	2	19.0	2	100	0	76	50	0	0	50	1.00
50728441--50728487	12	4.0	11	89	8	67	85	0	2	12	0.70
50728438--50728487	20	2.5	20	87	9	66	84	0	4	12	0.76
50728441--50728486	6	7.7	6	81	18	60	84	0	2	13	0.71
50729611--50729747	46	3.0	46	87	2	197	32	19	18	29	1.96
50730988--50731087	38	2.5	40	74	11	107	23	20	27	30	1.98
50731013--50731091	37	2.1	38	83	2	97	22	20	25	31	1.98
50738117--50738195	37	2.1	38	83	2	97	22	20	25	31	1.98
50739184--50739308	45	2.8	46	85	6	159	32	20	17	29	1.95
50739318--50741975	209	12.7	209	83	2	2830	37	16	21	23	1.93
50739318--50741975	626	4.2	626	82	3	2875	37	16	21	23	1.93
50739318--50741975	417	6.4	417	83	3	2863	37	16	21	23	1.93
50741681--50741851	48	3.6	48	88	0	245	36	16	23	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50741685--50741858	95	1.8	96	83	1	233	38	17	23	20	1.93
50741562--50741975	219	1.9	219	92	1	704	35	17	23	23	1.95
50747149--50747239	30	2.9	30	80	18	98	70	4	2	23	1.16
50747156--50747248	3	31.7	3	71	20	63	69	3	2	24	1.14
50747743--50747995	117	2.2	117	80	5	278	21	24	22	31	1.98
50747965--50748134	75	2.3	77	77	8	188	30	20	18	31	1.96
50787119--50787166	22	2.2	22	88	0	69	25	4	10	60	1.47
50788967--50789166	30	6.7	30	69	17	105	35	4	27	34	1.76
50788910--50789172	60	4.4	60	85	5	306	34	3	28	33	1.75
50789088--50789194	30	3.6	30	72	19	91	30	2	28	37	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171