genome.fa.s3.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  153  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45871608--45871739	23	5.7	23	86	2	167	28	12	19	40	1.87
45871705--45871750	23	2.0	23	83	8	58	39	10	17	32	1.84
45874272--45874300	13	2.1	14	93	6	51	58	0	0	41	0.98
45874267--45874299	9	3.9	9	88	11	52	57	0	0	42	0.98
45882942--45883007	23	2.8	24	93	2	116	57	4	0	37	1.19
45883079--45883122	23	2.0	23	86	4	63	68	0	2	29	1.02
45884477--45884505	3	10.0	3	92	7	51	31	0	0	68	0.89
45885791--45885853	24	2.6	24	84	0	90	52	11	12	23	1.71
45887782--45887844	24	2.6	24	87	0	99	53	11	11	23	1.68
45892495--45892544	26	1.9	26	83	0	64	42	18	2	38	1.61
45893672--45893725	21	2.7	21	88	5	76	27	0	5	66	1.13
45893690--45893726	12	3.3	12	78	21	53	24	0	8	67	1.17
45893744--45893781	19	2.0	20	85	15	53	36	2	2	57	1.26
45914715--45914901	52	3.6	52	82	0	185	34	24	15	26	1.95
45921989--45922139	52	2.9	52	81	0	167	35	22	15	26	1.94
45924030--45924323	52	5.6	52	86	6	405	37	22	13	25	1.92
45924030--45924323	105	2.8	104	84	7	407	37	22	13	25	1.92
45924030--45924323	158	1.9	157	89	3	466	37	22	13	25	1.92
45924787--45924818	16	2.0	16	93	0	55	25	18	3	53	1.59
45931509--45931538	15	2.1	14	93	6	51	43	0	0	56	0.99
45931733--45931758	2	13.0	2	100	0	52	50	0	0	50	1.00
45938581--45938606	3	8.7	3	100	0	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45939564--45939591	2	14.0	2	100	0	56	50	0	0	50	1.00
45944075--45944115	21	2.0	21	90	9	66	53	12	12	21	1.70
45949467--45949542	21	3.7	20	77	13	75	53	2	3	39	1.33
45949470--45949519	18	2.6	19	87	6	66	54	0	6	40	1.25
45950564--45950794	29	7.9	30	66	18	103	33	28	2	35	1.71
45950606--45950943	29	11.5	28	67	21	158	32	27	3	36	1.75
45950575--45950943	59	6.3	59	88	1	501	32	28	3	35	1.74
45950575--45950987	118	3.5	118	85	2	521	31	28	4	35	1.78
45950575--45950985	59	7.0	58	84	4	452	31	28	4	35	1.78
45952574--45952598	11	2.3	11	100	0	50	52	0	16	32	1.44
45952721--45952768	22	2.3	20	85	7	60	47	2	0	50	1.12
45969368--45969449	24	3.4	24	82	0	101	26	12	15	45	1.82
45970916--45971014	30	3.5	29	65	15	73	46	0	2	51	1.12
45973805--45973919	42	2.7	42	94	0	194	21	25	25	27	1.99
45980892--45980929	15	2.5	15	79	12	51	31	2	10	55	1.48
45980892--45980929	14	2.5	15	83	8	51	31	2	10	55	1.48
45988687--45988730	7	6.3	7	97	0	79	75	0	11	13	1.06
45989960--45989997	3	12.7	3	100	0	76	0	34	0	65	0.93
45995361--45995511	76	2.0	75	86	2	212	28	9	23	38	1.87
45995997--45996064	29	2.3	29	100	0	136	48	0	5	45	1.26
46000377--46000811	217	2.0	217	94	0	753	32	17	25	24	1.97
46002735--46002912	87	2.0	87	81	2	205	31	16	6	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46014710--46014856	61	2.4	61	98	0	285	36	12	19	30	1.90
46015683--46015794	52	2.1	54	85	4	149	30	24	8	37	1.84
46021135--46021482	173	2.0	173	93	0	597	33	16	18	30	1.94
46022513--46022553	17	2.5	17	81	14	50	17	4	2	75	1.08
46022513--46022566	6	9.8	5	79	15	54	20	3	1	74	1.07
46022513--46022566	22	2.4	22	90	3	81	20	3	1	74	1.07
46022529--46022566	17	2.3	16	90	4	58	21	0	2	76	0.91
46023503--46023543	16	2.6	16	85	14	59	80	0	9	9	0.91
46026155--46026195	21	2.0	20	85	4	55	56	9	0	34	1.32
46027802--46027826	13	1.9	13	100	0	50	64	16	4	16	1.44
46039619--46039865	127	1.9	127	93	0	422	39	10	12	37	1.78
46040471--46040542	29	2.7	26	78	17	76	55	1	2	40	1.23
46040478--46040545	27	2.4	29	83	9	79	52	1	2	42	1.25
46040552--46040639	46	1.9	46	86	6	126	59	2	5	32	1.34
46057948--46057985	15	2.4	16	86	4	51	34	0	0	65	0.93
46057948--46057995	16	3.1	15	80	14	53	31	0	0	68	0.90
46066958--46066995	13	2.9	13	84	0	58	65	10	7	15	1.45
46080320--46080367	12	3.8	13	86	13	57	66	2	31	0	1.03
46080308--46080691	192	2.0	191	93	1	653	49	6	32	11	1.65
46080512--46080559	12	3.8	13	84	15	57	64	2	33	0	1.05
46086191--46086219	15	1.9	15	100	0	58	31	13	20	34	1.92
46088399--46088500	36	2.8	36	93	0	168	30	29	14	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46088525--46088595	36	2.0	36	91	0	115	38	22	12	26	1.90
46090411--46090451	19	2.2	19	86	4	57	36	21	19	21	1.95
46091846--46091879	14	2.4	14	95	0	59	47	11	0	41	1.40
46101688--46101744	19	3.0	19	82	10	64	54	5	0	40	1.23
46101718--46101765	24	2.0	24	88	4	71	41	2	0	56	1.11
46101714--46101855	56	2.6	55	94	1	239	48	1	0	50	1.09
46102714--46102774	23	2.7	23	84	0	86	39	6	11	42	1.67
46103015--46103060	20	2.3	21	85	7	60	52	10	4	32	1.56
46103405--46103473	21	3.3	23	76	13	60	36	4	2	56	1.34
46104524--46104754	90	2.6	90	82	7	272	41	22	6	29	1.80
46104851--46104908	19	3.1	19	71	0	62	62	3	3	31	1.29
46105035--46105087	19	2.8	19	75	13	56	67	1	7	22	1.25
46105117--46105249	56	2.3	58	83	6	166	30	5	3	60	1.37
46105343--46105556	89	2.4	89	86	6	285	31	7	19	41	1.79
46107368--46107436	31	2.2	32	80	10	81	36	5	11	46	1.64
46107368--46107436	30	2.3	31	82	7	79	36	5	11	46	1.64
46112510--46112537	10	2.8	10	100	0	56	46	0	42	10	1.38
46117648--46117791	71	2.0	71	100	0	288	40	15	14	29	1.87
46118206--46118246	20	2.1	20	86	13	59	48	0	0	51	1.00
46125975--46126028	15	3.6	15	80	7	56	48	0	51	0	1.00
46126013--46126072	27	2.2	26	83	13	77	63	0	36	0	0.95
46126039--46126078	16	2.4	16	87	4	62	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46126093--46126139	20	2.3	20	82	7	60	72	2	25	0	0.96
46133967--46133999	13	2.4	14	90	5	50	45	0	3	51	1.16
46147781--46147813	17	1.9	17	93	0	57	12	3	3	81	0.91
46155978--46156026	7	6.6	7	86	13	55	2	26	0	71	0.97
46155978--46156017	8	5.2	8	93	6	57	2	25	0	72	0.97
46155978--46156026	15	3.3	14	86	13	55	2	26	0	71	0.97
46156611--46156654	18	2.5	17	85	3	52	59	13	11	15	1.62
46170657--46170687	2	15.5	2	100	0	62	48	0	0	51	1.00
46174226--46174361	72	1.9	71	83	7	177	17	24	21	36	1.94
46176324--46176459	72	1.9	71	83	7	177	17	24	21	36	1.94
46180523--46180658	72	1.9	71	86	4	193	17	24	22	35	1.95
46185796--46185928	72	1.9	71	83	10	173	19	21	21	38	1.94
46187906--46188041	72	1.9	71	81	4	166	19	25	19	34	1.96
46188961--46189097	72	1.9	71	80	4	159	21	23	18	36	1.95
46190018--46190153	72	1.9	71	83	4	175	19	23	21	36	1.95
46191074--46191209	72	1.9	72	87	4	204	16	25	22	36	1.94
46193185--46193320	72	1.9	71	84	4	184	17	21	24	36	1.94
46194238--46194373	72	1.9	71	84	4	184	17	25	22	35	1.95
46197789--46197836	19	2.6	18	83	6	60	41	0	58	0	0.98
46197783--46197836	6	8.8	6	89	4	72	40	0	59	0	0.98
46197899--46197939	11	3.8	11	87	3	57	53	0	0	46	1.00
46198747--46198774	6	4.7	6	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46198760--46199138	202	1.9	202	82	7	477	47	5	3	43	1.42
46201562--46201746	39	4.7	39	79	4	185	25	20	21	33	1.97
46201522--46201741	78	2.8	77	82	5	248	25	18	21	34	1.96
46201991--46202149	73	2.2	73	89	0	237	30	28	15	25	1.96
46202709--46202787	37	2.1	37	88	0	113	39	24	7	29	1.82
46206349--46206497	42	3.5	42	82	5	167	29	11	38	20	1.88
46206447--46206606	84	1.9	84	86	0	230	30	10	38	20	1.87
46206626--46206689	30	2.1	30	94	0	110	31	10	35	21	1.88
46211056--46211121	16	4.1	17	70	14	50	31	25	27	15	1.95
46211150--46211198	18	2.7	18	83	0	53	34	16	32	16	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171