genome.fa.s3.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  121  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38546507--38546791	141	2.0	142	93	0	491	43	13	13	30	1.82
38546810--38546860	24	2.1	24	92	0	84	58	9	9	21	1.58
38548764--38548822	24	2.5	24	88	0	91	49	11	13	25	1.76
38552075--38552129	21	2.6	21	86	13	85	47	18	14	20	1.83
38552144--38552222	22	3.4	22	80	13	95	43	25	24	7	1.80
38552135--38552213	26	3.2	26	82	14	112	39	24	26	10	1.87
38564063--38564128	33	1.9	36	87	9	102	53	4	33	9	1.53
38564898--38564938	16	2.7	16	81	7	50	39	0	21	39	1.54
38565154--38565269	23	5.0	23	78	8	117	11	24	22	42	1.86
38565236--38565347	23	4.9	23	79	8	88	12	25	20	41	1.87
38565257--38565343	23	3.8	23	82	10	99	13	25	22	37	1.91
38573915--38573960	25	1.9	23	86	8	65	32	4	6	56	1.45
38579716--38579775	27	2.3	27	88	2	86	21	20	25	33	1.97
38579998--38580407	205	2.0	205	96	0	748	31	11	19	37	1.88
38586691--38586743	27	2.0	27	85	7	72	28	18	16	35	1.93
38594338--38594439	31	3.3	31	87	0	141	33	22	2	41	1.69
38608960--38609017	29	2.0	29	93	0	98	43	20	3	32	1.69
38614767--38614809	9	4.8	9	76	0	50	34	11	27	25	1.91
38616156--38616214	16	3.4	17	75	15	57	6	25	1	66	1.26
38616097--38616283	96	1.9	97	81	5	227	11	26	2	59	1.46
38618370--38618437	9	7.6	9	69	0	55	36	10	26	26	1.88
38618371--38618437	27	2.5	27	82	0	89	37	10	25	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38633129--38633232	52	2.0	52	98	0	199	49	9	16	25	1.76
38634809--38634946	29	4.9	29	80	7	142	49	10	18	22	1.77
38636999--38637057	21	2.8	21	100	0	118	32	23	5	38	1.77
38637615--38637685	36	2.0	36	85	0	97	42	12	5	39	1.67
38637883--38639022	45	26.3	45	76	12	945	42	16	6	34	1.74
38638017--38638077	29	2.1	29	84	0	77	42	16	1	39	1.58
38637972--38638200	74	3.1	73	84	4	287	44	15	3	35	1.64
38638091--38638160	33	2.1	33	91	0	113	45	17	2	34	1.63
38638535--38638796	36	6.7	36	76	15	172	41	16	7	33	1.77
38638643--38638988	72	4.5	73	73	15	270	41	17	7	32	1.78
38637926--38639022	199	5.3	202	81	10	975	42	16	6	34	1.74
38638842--38638991	36	4.2	36	82	0	183	42	19	7	31	1.79
38639222--38639412	57	3.3	56	86	5	240	50	12	15	20	1.76
38639214--38639390	28	6.2	28	86	2	219	49	11	16	22	1.77
38639885--38639922	3	12.7	3	94	0	67	65	0	2	31	1.06
38647307--38647385	39	2.0	39	97	0	149	27	7	29	35	1.84
38657021--38657266	37	6.6	37	85	0	312	30	31	23	14	1.94
38657021--38657266	111	2.2	111	88	0	357	30	31	23	14	1.94
38659247--38659390	41	3.5	41	78	9	141	17	16	39	26	1.91
38661968--38662353	52	7.5	52	87	0	499	27	13	23	36	1.92
38661968--38662353	206	1.9	206	86	2	560	27	13	23	36	1.92
38673213--38673258	19	2.3	20	81	3	58	13	6	13	67	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38673466--38673524	18	3.4	17	76	17	57	15	23	10	50	1.74
38673526--38673550	2	12.5	2	100	0	50	52	0	0	48	1.00
38674441--38674480	21	2.0	21	90	5	64	25	15	15	45	1.84
38681824--38681876	18	2.8	19	77	5	72	43	3	18	33	1.68
38684110--38684155	15	2.9	16	83	6	58	28	10	0	60	1.30
38697826--38697873	24	2.0	24	95	0	87	47	6	4	41	1.48
38702854--38702908	22	2.6	21	88	5	92	20	20	12	47	1.82
38705885--38705984	36	2.8	36	87	0	137	38	12	25	25	1.90
38709817--38709841	6	4.2	6	100	0	50	84	16	0	0	0.63
38720314--38720342	3	9.7	3	100	0	58	31	0	0	68	0.89
38722957--38723016	28	2.1	28	82	11	70	36	0	1	61	1.06
38722956--38723015	27	2.2	27	80	13	70	35	0	1	63	1.05
38727124--38727155	16	2.0	16	100	0	64	50	0	12	37	1.41
38728787--38729142	101	3.5	101	87	2	439	26	19	17	35	1.95
38728796--38729142	51	6.9	50	69	17	200	26	19	18	35	1.95
38729132--38729512	149	2.5	148	84	3	440	23	21	18	35	1.95
38729808--38729977	49	3.5	49	76	7	175	21	26	14	37	1.92
38729785--38729998	98	2.2	97	79	5	243	23	23	15	37	1.93
38730977--38731015	13	3.1	12	85	7	51	5	5	2	87	0.75
38735458--38735498	18	2.2	18	87	12	57	65	2	0	31	1.05
38736401--38736439	20	2.0	20	89	0	60	25	7	17	48	1.74
38736452--38736489	12	2.9	13	88	7	51	26	0	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38738161--38738201	19	2.0	20	82	17	50	19	2	4	73	1.13
38740475--38740638	86	1.9	86	84	0	220	26	21	19	32	1.97
38740477--38740645	43	3.9	43	82	0	176	28	20	18	31	1.97
38740918--38741055	66	2.1	66	84	0	177	15	24	18	40	1.90
38750270--38750340	8	8.6	8	75	6	61	52	1	2	43	1.24
38750271--38750381	42	2.6	42	92	0	177	45	0	5	47	1.31
38753448--38753497	22	2.3	23	75	10	59	64	0	2	34	1.05
38754373--38754422	16	2.9	17	74	14	50	64	6	2	28	1.28
38755065--38755183	41	2.9	42	82	8	147	21	26	10	42	1.84
38755184--38755291	40	2.7	40	86	0	144	23	18	19	38	1.93
38755495--38755599	47	2.2	46	81	9	115	27	14	20	38	1.91
38760798--38760861	29	2.2	30	83	8	78	62	3	3	31	1.26
38760889--38760937	24	2.0	24	88	0	71	22	30	10	36	1.87
38761333--38761376	22	2.0	23	86	8	65	38	6	0	54	1.27
38761382--38761427	19	2.4	19	88	0	65	28	0	4	67	1.10
38761402--38761456	25	2.2	26	81	12	62	30	0	3	65	1.10
38761462--38761527	8	7.9	8	74	14	53	31	4	0	63	1.14
38761451--38761515	34	1.9	34	87	0	94	32	4	1	61	1.26
38761379--38761515	16	7.9	17	69	17	59	32	2	3	62	1.25
38761445--38761524	34	2.4	34	80	4	90	30	5	1	63	1.23
38761505--38761560	18	3.2	17	79	18	62	19	10	1	67	1.29
38761602--38761646	10	4.6	10	79	20	51	24	2	6	66	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38763484--38763565	31	2.6	31	76	7	85	50	8	18	23	1.74
38766507--38766543	19	1.9	19	88	0	56	32	0	2	64	1.07
38769564--38769615	3	17.3	3	95	0	95	34	1	0	63	1.06
38770048--38770547	148	3.4	149	86	3	652	44	3	9	43	1.52
38781618--38782742	562	2.0	562	99	0	2223	21	31	16	31	1.95
38795287--38795317	16	1.9	16	100	0	62	83	0	12	3	0.75
38796012--38796087	33	2.3	32	84	6	100	80	0	18	1	0.79
38796017--38796084	19	3.8	17	83	14	84	79	0	19	1	0.81
38796010--38796074	7	9.6	7	75	12	64	81	0	16	1	0.77
38796947--38797286	49	7.0	49	77	2	283	37	14	24	22	1.92
38796980--38797285	147	2.1	147	81	3	357	37	15	24	22	1.93
38796980--38797286	98	3.1	98	76	1	319	37	15	24	22	1.93
38797288--38797403	42	2.8	42	84	11	134	40	12	25	20	1.88
38797512--38797985	99	5.0	92	68	13	294	34	15	23	26	1.95
38797559--38797926	99	3.8	95	73	14	313	34	16	23	25	1.95
38797512--38797985	192	2.5	191	87	2	671	34	15	23	26	1.95
38797820--38798142	170	1.9	170	84	3	436	36	17	19	26	1.94
38797628--38798347	362	2.0	362	83	3	923	35	16	21	26	1.94
38798226--38798564	93	3.6	92	76	7	297	35	16	21	26	1.95
38804216--38804265	16	3.2	16	83	5	50	48	0	8	44	1.32
38804229--38804277	16	3.1	16	85	2	55	53	0	8	38	1.31
38813692--38813719	13	2.2	13	100	0	56	25	46	7	21	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38818232--38818286	24	2.3	24	93	0	92	5	20	3	70	1.22
38822456--38822527	24	3.0	24	100	0	144	33	25	12	29	1.92
38836368--38836439	29	2.5	30	80	8	87	25	51	11	12	1.72
38837761--38837808	18	2.8	17	78	9	53	10	8	6	75	1.20
38842234--38842265	17	1.9	17	93	6	57	78	6	12	3	1.06
38844190--38844752	49	11.6	49	71	8	346	37	17	26	19	1.93
38844200--38844816	98	6.4	98	82	4	725	36	17	26	19	1.94
38844200--38844846	195	3.3	196	83	5	778	36	17	26	19	1.93
38844787--38844895	49	2.2	48	81	3	110	36	15	29	18	1.92
38844802--38844916	49	2.3	49	80	0	131	36	20	26	15	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171