genome.fa.s3.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  118  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37586330--37586390	22	2.7	23	74	7	70	57	18	0	24	1.40
37587491--37587577	14	6.3	14	77	6	79	36	24	18	20	1.95
37587662--37587722	23	2.7	21	83	16	86	24	1	26	47	1.61
37588989--37589205	109	2.0	109	83	3	276	32	13	13	40	1.84
37594592--37594668	37	2.1	37	92	4	129	32	12	33	20	1.91
37599264--37599390	56	2.3	57	87	6	188	20	21	34	23	1.96
37599339--37599435	43	2.2	43	85	1	131	17	20	37	24	1.94
37599428--37599460	12	2.8	12	95	0	57	21	36	36	6	1.78
37599383--37599512	65	2.0	66	84	3	172	20	22	36	21	1.95
37599505--37599622	53	2.2	53	77	4	121	20	16	34	27	1.95
37600073--37600170	40	2.5	40	84	3	117	38	20	17	23	1.93
37601532--37601580	21	2.4	22	86	10	68	22	6	2	69	1.21
37612318--37612343	12	2.2	12	100	0	52	23	0	7	69	1.14
37613119--37613163	19	2.4	19	88	7	65	40	0	4	55	1.20
37616816--37616875	18	3.5	17	75	18	54	18	5	0	76	0.96
37619193--37619239	21	2.2	22	88	3	69	19	10	0	70	1.16
37619184--37619239	22	2.4	23	77	14	62	17	12	0	69	1.18
37621526--37621748	88	2.5	88	77	9	222	38	19	10	32	1.85
37623452--37623500	21	2.2	24	85	10	68	57	0	0	42	0.99
37628065--37628099	18	1.9	18	88	11	54	28	11	0	60	1.32
37632284--37632575	145	2.0	146	96	0	541	33	15	8	42	1.78
37632872--37632902	12	2.7	12	95	5	55	19	16	6	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37636716--37636837	60	2.1	59	83	7	149	54	13	6	24	1.63
37639218--37639257	18	2.2	18	86	0	53	70	7	2	20	1.24
37641995--37642025	4	8.0	4	92	7	55	48	0	0	51	1.00
37643546--37643600	27	2.1	26	86	3	74	49	10	7	32	1.65
37643565--37643613	25	1.9	26	83	4	64	53	16	6	24	1.66
37644171--37644204	13	2.8	12	86	8	50	35	0	5	58	1.22
37644298--37644330	16	2.1	16	100	0	66	42	9	18	30	1.81
37644300--37644336	16	2.5	15	91	8	58	43	5	18	32	1.73
37648125--37648499	30	12.8	29	78	11	299	33	25	6	34	1.82
37648383--37648480	29	3.5	27	82	9	117	33	28	6	31	1.82
37648383--37648498	56	2.1	56	83	6	146	33	29	6	30	1.84
37648383--37648487	28	3.8	28	82	6	124	31	30	7	30	1.85
37648805--37649095	97	3.0	97	92	1	467	26	18	16	37	1.92
37653628--37653670	12	3.8	11	82	11	52	86	0	13	0	0.58
37653617--37653673	19	3.0	18	85	12	78	85	0	12	1	0.66
37654601--37654838	50	5.0	49	72	13	138	32	14	32	19	1.92
37654741--37654839	50	2.0	51	89	2	155	34	16	31	18	1.93
37655097--37655240	39	3.7	37	70	10	110	22	29	21	26	1.99
37655093--37655302	78	2.7	78	83	4	246	22	30	20	26	1.98
37655093--37655302	39	5.4	38	68	7	104	22	30	20	26	1.98
37655192--37655323	39	3.4	38	75	7	124	25	28	21	25	1.99
37655389--37655750	172	2.1	171	89	1	546	36	15	24	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37655548--37656267	209	3.4	209	88	0	1064	36	18	22	21	1.95
37655885--37656040	85	1.8	85	87	0	231	34	17	25	23	1.96
37657274--37657484	112	1.8	112	84	6	280	34	12	4	48	1.61
37658310--37658578	30	9.2	30	76	12	213	34	27	4	33	1.78
37658322--37658662	28	11.7	30	76	13	213	33	27	6	32	1.82
37658334--37658511	59	3.1	58	81	9	211	34	25	5	34	1.79
37658981--37659271	97	3.0	95	89	5	431	27	18	16	37	1.92
37669263--37669296	15	2.3	15	89	0	50	20	5	32	41	1.76
37670948--37671012	24	2.7	24	70	2	58	20	6	7	66	1.39
37671049--37671105	11	5.1	11	75	12	62	14	12	22	50	1.75
37671076--37671104	12	2.5	12	94	5	51	13	10	24	51	1.72
37671789--37671837	21	2.3	21	82	0	62	42	30	16	10	1.81
37672275--37672309	12	3.0	12	91	4	54	17	8	17	57	1.64
37673664--37673811	73	2.0	73	90	0	233	37	16	20	26	1.93
37681987--37686570	216	21.3	216	84	3	5285	39	14	17	28	1.89
37682647--37686570	646	6.1	646	83	3	4587	39	14	17	28	1.89
37687031--37687180	80	1.9	80	95	0	273	27	14	23	34	1.94
37687623--37687742	48	2.5	48	94	1	206	51	15	9	24	1.71
37688053--37688713	216	3.1	216	92	0	1054	39	14	18	27	1.89
37688545--37688885	172	2.0	172	84	0	448	37	14	20	26	1.92
37688324--37689101	388	2.0	388	84	1	1029	38	13	19	27	1.90
37690003--37691764	216	8.2	216	80	4	1873	39	14	16	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37690003--37691743	431	4.1	431	84	3	2296	39	14	16	29	1.88
37693418--37693457	17	2.4	17	82	0	53	82	0	10	7	0.84
37698296--37698376	40	2.0	40	92	0	135	29	16	27	27	1.97
37699859--37733734	216	157.1	216	82	2	39083	38	14	18	27	1.91
37699859--37741795	432	97.3	430	82	3	47869	38	14	18	27	1.90
37699859--37741795	648	64.9	644	84	3	47521	38	14	18	27	1.90
37733795--37741795	216	37.2	216	83	3	9040	39	14	18	27	1.90
37743746--37743938	43	4.6	42	82	6	142	26	26	12	34	1.92
37743788--37743938	43	3.5	43	85	2	171	25	27	13	33	1.94
37744855--37744886	16	2.0	16	93	0	55	25	18	3	53	1.59
37750416--37750613	83	2.4	85	81	8	235	27	24	10	37	1.88
37750407--37750613	43	4.9	43	79	6	201	28	23	11	37	1.89
37750414--37750637	43	5.3	43	78	7	183	27	24	11	37	1.89
37751566--37751597	16	2.0	16	93	0	55	25	18	3	53	1.59
37752735--37753667	216	4.3	216	84	4	1172	39	13	18	28	1.88
37752737--37754221	432	3.5	431	81	8	1701	39	13	18	28	1.88
37753249--37754078	410	2.0	409	84	5	1077	38	14	18	28	1.90
37753659--37754228	215	2.7	212	86	6	765	39	14	18	27	1.89
37754491--37754621	48	2.8	48	94	1	219	23	9	14	51	1.72
37754500--37754636	48	2.9	47	86	5	161	22	10	14	51	1.73
37755065--37755228	80	2.1	79	89	2	249	35	19	15	29	1.93
37755683--37756426	216	3.5	215	88	2	1118	40	13	17	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37756538--37756680	15	9.5	15	64	8	58	33	28	20	17	1.95
37756514--37756651	30	4.6	30	90	0	195	31	28	21	18	1.97
37756535--37756680	60	2.4	60	81	4	161	33	28	20	17	1.95
37756539--37756667	30	4.3	31	84	5	88	32	30	20	16	1.95
37762568--37762625	30	1.9	30	96	0	107	37	12	22	27	1.89
37767294--37767340	18	2.6	18	80	10	60	10	12	2	74	1.16
37772652--37772800	50	2.9	50	79	6	131	37	12	14	35	1.84
37775278--37775337	30	2.0	30	96	0	111	30	15	13	41	1.85
37775281--37775354	30	2.5	29	82	12	80	33	16	12	37	1.85
37777202--37777529	169	1.9	169	85	1	442	38	14	20	26	1.90
37777558--37777598	21	2.0	20	86	13	57	51	14	9	24	1.72
37777558--37777793	123	1.9	123	88	0	355	40	14	16	27	1.88
37777371--37777989	331	1.8	333	86	2	891	39	15	18	26	1.90
37777681--37779722	216	9.5	216	87	2	2722	40	14	17	27	1.89
37777681--37779722	433	4.8	431	86	2	2710	40	14	17	27	1.89
37779609--37779649	20	2.0	21	90	4	66	46	19	12	21	1.82
37779614--37779844	123	1.9	123	86	0	327	38	14	19	28	1.90
37781907--37782054	71	2.0	73	85	7	201	50	10	14	25	1.74
37795925--37795968	20	2.2	20	84	8	54	63	20	4	11	1.44
37795945--37795992	23	2.0	24	92	4	80	75	16	2	6	1.11
37795959--37796015	12	4.8	12	78	4	53	71	17	3	7	1.22
37795945--37796003	20	2.7	21	84	10	66	72	16	3	6	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37795945--37796015	23	3.0	23	83	4	61	71	16	2	8	1.22
37795957--37796056	32	3.2	31	83	5	103	70	17	5	8	1.30
37796038--37796106	20	3.5	20	90	5	97	69	18	7	4	1.29
37799209--37799296	46	1.9	46	83	4	115	25	7	11	55	1.62
37804628--37804762	17	7.5	17	79	12	135	37	2	4	56	1.32
37804628--37804762	35	3.7	35	80	9	153	37	2	4	56	1.32
37804663--37804741	11	6.9	11	80	9	79	37	1	3	56	1.25
37804657--37804729	23	3.2	23	88	3	103	39	0	4	56	1.19
37804657--37804747	6	15.7	6	78	11	91	39	1	3	56	1.23
37806453--37806658	30	6.9	30	76	10	158	34	25	3	36	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171