genome.fa.s3.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  37  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16691512--16691554	19	2.3	19	84	11	54	48	4	0	46	1.22
16699327--16699371	9	5.0	9	83	0	54	46	0	4	48	1.22
16701512--16701547	3	12.0	3	100	0	72	33	0	0	66	0.92
16703979--16704057	26	3.0	26	67	17	63	30	8	3	56	1.47
16703962--16704039	26	2.9	27	71	11	70	32	6	7	53	1.55
16706216--16706270	16	3.2	16	71	14	56	52	5	5	36	1.48
16706213--16706270	19	3.2	19	68	22	61	53	5	5	36	1.46
16706984--16707031	23	2.1	23	84	7	62	47	0	0	52	1.00
16720155--16720227	34	2.2	33	79	18	80	60	2	1	35	1.20
16720199--16720244	9	5.2	9	77	12	51	63	0	0	36	0.95
16720198--16720244	18	2.6	19	87	9	64	61	0	0	38	0.96
16720783--16721036	9	27.3	9	72	14	171	33	2	3	60	1.25
16720785--16721001	10	23.5	8	70	22	55	33	2	3	60	1.27
16720795--16720960	65	2.5	65	79	12	185	33	1	4	61	1.23
16720994--16721045	20	2.6	20	93	0	86	32	0	3	63	1.12
16720984--16721043	29	2.0	30	90	6	95	35	0	1	63	1.05
16721074--16721307	116	2.0	116	95	0	423	40	9	9	40	1.71
16722024--16722073	25	2.0	25	84	7	66	38	2	2	58	1.21
16731687--16731715	15	2.0	15	93	6	51	24	34	13	27	1.93
16734184--16734253	31	2.3	31	85	4	99	55	10	1	32	1.42
16748098--16748136	18	2.2	17	86	4	51	51	7	10	30	1.64
16752994--16753019	1	26.0	1	100	0	52	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16753606--16753635	13	2.4	13	94	5	53	0	10	0	90	0.47
16753983--16754090	47	2.3	47	95	1	191	60	3	6	29	1.39
16762437--16762478	2	21.0	2	100	0	84	50	0	0	50	1.00
16762940--16762998	30	2.0	30	93	6	102	35	0	44	20	1.52
16764545--16764579	16	2.2	16	90	10	54	68	0	5	25	1.11
16764634--16764676	15	2.8	15	83	16	61	25	0	2	72	0.97
16771052--16771209	82	1.9	82	87	2	228	32	26	17	22	1.96
16775876--16775916	18	2.3	18	82	0	55	48	4	4	41	1.46
16779286--16779357	28	2.6	28	84	6	92	38	29	9	22	1.86
16782740--16782782	21	2.0	22	86	8	63	48	4	37	9	1.56
16788049--16788073	9	2.8	9	100	0	50	8	0	0	92	0.40
16789001--16789036	2	18.0	2	100	0	72	50	0	0	50	1.00
16795618--16795795	58	3.1	57	90	4	277	46	20	0	33	1.51
16796351--16796376	5	5.2	5	100	0	52	23	19	19	38	1.93
16796666--16796698	17	1.9	17	88	11	50	51	0	0	48	1.00
16797391--16797435	16	2.8	15	86	10	54	68	0	0	31	0.89
16798623--16798719	22	4.3	22	85	5	106	39	23	23	13	1.90
16798619--16798719	45	2.2	46	77	8	118	40	22	23	12	1.89
16807788--16807818	3	10.3	3	100	0	62	0	0	32	67	0.91
16817871--16817906	18	2.0	18	100	0	72	27	22	22	27	1.99
16819996--16820038	21	2.0	21	100	0	86	13	13	4	67	1.38
16826591--16826623	3	11.0	3	100	0	66	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16827633--16827688	22	2.4	23	70	8	60	23	10	5	60	1.50
16827739--16827778	18	2.2	19	86	4	55	47	0	0	52	1.00
16833458--16833510	19	2.8	21	78	21	55	56	5	1	35	1.34
16835002--16835026	13	1.9	13	100	0	50	64	4	0	32	1.12
16835125--16835158	14	2.3	15	90	5	52	26	17	5	50	1.69
16835980--16836009	15	2.0	15	93	0	51	53	3	0	43	1.17
16837036--16837074	19	2.2	17	86	13	53	51	0	5	43	1.24
16849061--16849206	59	2.5	58	83	6	161	30	15	11	41	1.83
16849110--16849297	100	1.9	100	83	7	247	28	20	12	38	1.89
16849245--16849443	61	3.3	59	78	12	174	26	18	14	40	1.89
16849208--16849517	60	5.2	60	75	8	217	26	19	14	39	1.90
16853352--16853935	85	6.9	85	87	5	826	44	5	3	46	1.44
16853351--16853935	257	2.3	253	90	4	912	44	5	3	46	1.44
16853352--16853935	168	3.4	169	89	4	838	44	5	3	46	1.44
16856341--16856432	30	3.1	30	84	4	98	23	7	4	64	1.38
16856352--16856448	30	3.3	29	86	1	104	25	7	4	62	1.39
16856395--16856448	17	3.5	17	69	23	55	22	11	3	62	1.43
16857262--16857874	60	10.3	59	75	11	440	38	15	17	28	1.90
16857262--16857872	59	10.3	59	74	12	361	38	15	17	28	1.90
16857262--16857881	118	5.2	117	75	11	408	38	15	17	28	1.90
16859230--16859347	58	2.0	58	96	0	218	30	13	19	36	1.90
16870249--16870306	21	2.8	20	84	10	80	22	5	27	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16876769--16876832	13	4.9	13	74	14	51	37	15	6	40	1.73
16876769--16876830	26	2.4	27	81	8	74	37	16	6	40	1.74
16881928--16882017	31	2.9	31	89	0	144	35	5	12	46	1.65
16885876--16885914	17	2.3	17	90	0	60	46	25	12	15	1.81
16887836--16887872	15	2.5	15	100	0	74	10	21	10	56	1.64
16894627--16894656	2	15.0	2	100	0	60	0	50	0	50	1.00
16902813--16902848	2	18.0	2	88	0	54	50	0	2	47	1.15
16903498--16903523	2	13.0	2	100	0	52	50	0	0	50	1.00
16903825--16903851	2	13.5	2	100	0	54	51	0	48	0	1.00
16909083--16909229	39	3.8	39	82	6	131	35	19	12	33	1.89
16918149--16918187	19	2.2	18	86	9	53	30	25	33	10	1.89
16929967--16930041	31	2.4	31	88	0	114	49	9	17	24	1.75
16941714--16941752	13	3.1	13	81	3	53	66	0	25	7	1.18
16971592--16971653	30	2.1	30	84	6	81	22	27	0	50	1.50
16976454--16976485	4	8.0	4	100	0	64	25	0	50	25	1.50
16979731--16979787	25	2.2	26	90	3	89	10	14	38	36	1.80
16980801--16980853	20	2.7	18	75	16	52	35	1	7	54	1.40
16985086--16985400	141	2.2	140	83	4	384	27	17	20	34	1.95
16985132--16985506	141	2.7	134	79	7	409	26	17	21	34	1.95
16985931--16985991	7	8.7	7	77	13	54	47	29	1	21	1.60
16985931--16985991	28	2.2	28	85	5	79	47	29	1	21	1.60
17002438--17002498	24	2.5	24	83	0	77	50	11	11	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17005426--17005464	17	2.3	17	86	0	51	17	10	25	46	1.80
17005525--17005552	5	5.6	5	100	0	56	82	0	0	17	0.68
17006326--17006382	6	9.3	6	92	3	78	15	28	15	40	1.88
17006326--17006383	25	2.4	24	88	2	80	15	27	15	41	1.87
17022465--17022524	25	2.3	26	83	13	70	20	8	5	66	1.37
17027379--17027428	22	2.3	22	75	3	57	64	0	0	36	0.94
17029757--17029795	20	2.0	20	85	5	53	15	58	12	12	1.62
17043236--17043295	18	3.2	18	76	23	61	55	0	40	5	1.22
17063169--17063204	17	2.1	17	94	0	63	41	8	16	33	1.78
17071011--17071070	26	2.3	26	79	0	75	41	16	3	38	1.65
17071008--17071070	13	4.8	13	75	7	65	41	17	3	38	1.65
17073207--17073289	33	2.4	34	76	13	89	51	9	12	26	1.69
17088645--17088889	23	10.5	23	81	10	248	11	23	22	42	1.85
17088645--17088840	48	4.2	46	85	7	252	11	23	22	42	1.86
17088645--17088840	71	2.8	71	92	4	310	11	23	22	42	1.86
17088669--17088888	71	3.1	69	86	10	281	11	23	21	43	1.86
17101864--17101888	13	1.9	13	100	0	50	64	8	20	8	1.46
17102058--17102131	30	2.4	31	82	8	89	45	4	5	44	1.45
17117757--17117805	20	2.5	20	96	0	89	38	12	4	44	1.61
17120947--17120986	18	2.2	18	100	0	80	15	17	30	37	1.90
17128691--17128720	3	10.0	3	100	0	60	0	33	0	66	0.92
17129669--17129760	44	2.1	45	87	2	132	39	5	3	52	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17134309--17134447	58	2.4	58	83	4	165	33	2	29	34	1.70
17134413--17134596	30	6.1	29	83	10	171	31	3	25	39	1.72
17134432--17134597	30	5.5	30	81	8	185	32	3	24	39	1.72
17134339--17134597	61	4.3	60	78	10	205	32	2	27	37	1.71
17135709--17135743	18	1.9	18	94	0	61	45	0	0	54	0.99
17136469--17136525	6	9.8	6	77	7	55	50	5	0	43	1.24
17136469--17136524	17	3.2	17	82	9	69	50	5	0	44	1.25
17136467--17136525	23	2.6	23	83	5	66	52	5	0	42	1.23
17138824--17138853	2	15.0	2	100	0	60	50	0	0	50	1.00
17140207--17140255	25	1.9	26	91	4	82	32	12	10	44	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171