genome.fa.s3.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  93  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30254989--30255066	30	2.5	31	81	12	88	44	1	1	52	1.17
30258324--30258363	19	2.1	19	85	4	53	30	7	5	57	1.48
30260544--30260600	30	1.9	30	82	7	71	56	0	12	31	1.36
30269286--30269349	30	2.1	30	82	5	76	48	4	6	40	1.49
30269834--30269882	23	2.1	23	88	3	71	73	4	8	14	1.21
30270698--30270740	19	2.3	19	84	8	52	58	4	0	37	1.19
30271310--30271500	103	1.9	102	86	5	278	25	26	13	34	1.93
30272193--30272247	4	13.8	4	78	21	62	78	0	3	18	0.90
30272191--30272252	13	4.6	13	72	20	56	79	0	3	17	0.87
30272191--30272249	7	7.6	7	85	14	64	79	0	3	16	0.86
30276289--30276328	21	1.9	21	89	0	62	25	17	15	42	1.88
30276296--30276339	21	2.1	21	82	0	52	27	15	15	40	1.88
30278707--30278749	19	2.3	19	84	8	52	58	4	0	37	1.19
30278770--30278798	10	3.0	10	95	5	51	89	0	0	10	0.48
30288310--30288344	6	5.8	6	100	0	70	31	0	68	0	0.90
30288561--30288614	24	2.2	25	80	9	67	44	9	12	33	1.75
30293073--30293103	14	2.2	14	94	0	53	41	0	9	48	1.36
30293658--30293698	13	2.9	14	77	22	50	41	0	0	58	0.98
30293658--30293694	15	2.3	17	86	13	60	37	0	0	62	0.96
30294298--30294329	9	3.4	9	95	4	55	34	0	0	65	0.93
30299183--30299215	15	2.4	14	90	10	50	66	3	0	30	1.06
30299333--30299370	15	2.6	14	81	18	51	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30299485--30299560	38	2.0	38	100	0	152	31	15	10	42	1.81
30299686--30299735	23	2.2	23	82	7	57	58	6	6	30	1.46
30302802--30302832	14	2.2	14	94	0	53	64	3	0	32	1.09
30307932--30308031	17	5.3	19	75	22	95	61	2	3	34	1.23
30310415--30310451	17	2.2	17	90	4	58	59	0	2	37	1.12
30315982--30316028	23	2.1	21	92	7	76	65	0	6	27	1.16
30317008--30317067	27	2.2	26	82	11	68	60	0	0	40	0.97
30317026--30317066	21	1.9	22	90	5	66	58	0	0	41	0.98
30334922--30334997	29	2.6	28	74	14	73	36	7	2	52	1.45
30335981--30336009	3	9.7	3	100	0	58	31	0	0	68	0.89
30346141--30346169	5	5.8	5	100	0	58	79	0	0	20	0.74
30370046--30370520	242	2.0	241	93	1	817	42	9	21	26	1.83
30372435--30372483	19	2.4	21	77	19	59	40	2	0	57	1.10
30372737--30372821	3	29.3	3	81	11	106	65	1	30	2	1.12
30375043--30375097	19	2.9	19	88	0	74	23	27	16	32	1.96
30377970--30378007	17	2.2	18	95	4	69	52	0	0	47	1.00
30378134--30378182	18	2.5	19	77	12	55	40	0	0	59	0.98
30380891--30381207	80	4.0	80	86	4	444	33	25	17	23	1.96
30380891--30381207	159	2.0	160	87	3	460	33	25	17	23	1.96
30387549--30387989	194	2.3	194	80	5	489	28	20	26	25	1.99
30391944--30392310	80	4.6	80	86	1	468	34	24	17	23	1.96
30391944--30392310	160	2.3	160	87	1	538	34	24	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30393773--30393797	11	2.3	11	100	0	50	40	16	0	44	1.47
30396528--30396623	12	8.3	12	74	11	76	9	3	16	70	1.26
30396511--30396636	56	2.3	56	81	4	148	11	3	15	69	1.33
30396753--30396837	38	2.2	38	82	12	102	29	0	7	63	1.21
30397625--30397679	17	3.4	16	85	9	67	50	0	0	49	1.00
30398704--30398735	16	2.0	16	93	0	55	18	21	18	40	1.91
30399590--30399905	30	10.7	30	73	10	222	37	20	1	40	1.61
30399590--30400060	89	5.3	87	77	9	334	35	23	1	39	1.64
30399612--30400060	30	15.2	28	70	13	199	35	23	1	39	1.64
30399612--30400060	60	7.6	58	74	11	274	35	23	1	39	1.64
30400319--30400503	95	1.9	96	81	6	225	30	20	14	35	1.91
30408971--30409084	53	2.2	53	95	3	205	31	7	6	54	1.54
30421263--30421300	16	2.4	16	91	8	60	65	2	0	31	1.06
30423187--30423247	22	2.8	22	85	7	72	72	3	11	13	1.24
30423213--30423242	15	1.9	16	93	6	53	70	3	13	13	1.30
30424047--30424089	19	2.3	19	84	8	52	58	4	0	37	1.19
30424689--30424888	109	1.8	109	80	2	240	26	22	11	40	1.88
30425535--30425590	14	4.2	13	78	19	53	75	1	1	21	0.99
30429577--30429616	21	1.9	21	89	0	62	27	17	12	42	1.85
30431166--30431226	22	2.8	22	85	7	72	72	3	11	13	1.24
30431192--30431221	15	1.9	16	93	6	53	70	3	13	13	1.30
30432025--30432067	19	2.3	19	84	8	52	58	4	0	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30432915--30432956	20	2.1	20	90	0	66	23	7	0	69	1.13
30436117--30436149	12	2.8	12	90	0	57	6	9	84	0	0.76
30436367--30436651	114	2.5	115	78	6	276	32	11	13	41	1.81
30436478--30436696	114	1.9	115	80	4	255	34	10	11	43	1.75
30443278--30443468	23	8.5	23	71	16	132	42	21	24	11	1.86
30443371--30443468	23	4.2	23	83	10	135	40	23	24	11	1.87
30448241--30448308	9	7.2	9	76	12	57	67	2	2	26	1.19
30450532--30450561	15	1.9	16	93	6	53	36	23	0	40	1.55
30450916--30451093	71	2.5	71	84	0	221	34	25	15	24	1.95
30459613--30459671	3	19.7	3	81	6	57	5	0	66	28	1.13
30459797--30459826	3	10.0	3	100	0	60	66	0	33	0	0.92
30461108--30461163	21	2.4	25	74	17	66	58	0	0	41	0.98
30462085--30462266	96	1.9	95	82	6	224	38	14	18	28	1.91
30462628--30462725	29	3.3	29	75	10	92	30	6	24	38	1.80
30465026--30465630	200	3.0	200	88	2	854	21	23	19	35	1.96
30466692--30466786	44	2.2	44	94	0	163	11	23	12	52	1.71
30477225--30477404	96	1.9	96	81	4	220	37	13	19	29	1.91
30477720--30477857	29	4.8	28	73	14	93	36	4	24	34	1.75
30477784--30477948	29	5.6	30	83	5	194	33	1	24	39	1.66
30477755--30477945	59	3.3	59	83	6	212	33	2	25	38	1.70
30481655--30481704	18	2.8	18	79	11	66	36	20	14	30	1.91
30482295--30482329	6	5.8	6	96	0	52	57	8	34	0	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30482878--30483898	383	2.7	381	86	2	1427	42	16	14	27	1.87
30484521--30484570	20	2.6	19	78	12	57	62	6	0	32	1.20
30487472--30487503	3	10.3	3	93	6	55	0	34	0	65	0.93
30487837--30487911	30	2.5	30	81	12	82	30	0	22	46	1.52
30488726--30488774	25	2.0	25	84	8	64	20	18	20	40	1.91
30488780--30488819	19	2.1	19	85	0	53	20	22	20	37	1.94
30492612--30492665	26	2.1	26	86	3	74	38	0	0	61	0.96
30492612--30492698	31	3.2	26	76	17	77	40	1	0	58	1.05
30492628--30492682	19	2.8	19	83	8	67	41	0	0	58	0.98
30492640--30492706	31	2.2	31	97	0	125	40	1	0	58	1.07
30509049--30509096	21	2.3	21	85	0	60	16	14	29	39	1.88
30527582--30527645	4	16.2	4	73	12	53	73	1	3	21	1.06
30527582--30527713	12	11.5	11	68	20	67	71	3	4	20	1.20
30527582--30527713	11	12.5	10	65	20	56	71	3	4	20	1.20
30527583--30527679	45	2.2	43	83	14	117	69	3	6	21	1.25
30527669--30527716	6	7.8	6	77	13	53	77	4	0	18	0.93
30529920--30530022	23	4.5	23	85	0	134	25	23	19	32	1.98
30529920--30530022	46	2.2	46	87	0	152	25	23	19	32	1.98
30532746--30532784	18	2.2	18	86	9	53	17	23	2	56	1.53
30533799--30533850	15	3.3	15	73	10	50	44	0	0	55	0.99
30533806--30533859	18	3.2	18	79	10	69	46	0	0	53	1.00
30533807--30533865	18	3.3	18	75	13	59	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30534154--30535242	542	2.0	542	98	0	2124	30	10	21	36	1.88
30535243--30535288	20	2.3	20	82	14	51	54	0	8	36	1.32
30544901--30545065	58	2.9	57	79	2	168	27	10	8	53	1.63
30545168--30545280	58	1.9	59	82	8	142	49	9	13	27	1.73
30545230--30545366	31	4.5	31	75	9	131	49	10	13	25	1.75
30545291--30545345	28	2.0	27	82	10	67	56	7	14	21	1.63
30545179--30545344	89	1.9	89	84	6	228	50	9	14	25	1.73
30546297--30546321	12	2.1	12	100	0	50	56	8	8	28	1.57
30546437--30546481	2	23.0	2	90	4	74	46	0	0	53	1.00
30546427--30546483	10	5.5	10	87	6	69	40	1	0	57	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171