genome.fa.s3.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  156  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46645670--46645708	17	2.4	15	84	16	51	43	10	2	43	1.52
46645670--46645709	16	2.4	18	88	12	59	45	10	2	42	1.51
46646960--46647066	29	3.7	29	82	2	126	26	15	20	37	1.93
46647736--46647932	32	6.2	32	88	1	180	41	6	14	37	1.72
46647689--46647922	15	15.1	15	73	12	114	39	9	14	36	1.79
46647752--46647932	17	11.3	17	77	12	177	41	5	14	38	1.69
46647737--46647932	64	3.1	64	89	0	286	41	6	14	37	1.71
46649516--46649558	21	2.0	22	86	13	63	23	20	18	37	1.94
46651234--46651286	27	2.0	25	82	7	61	32	16	0	50	1.46
46655820--46655885	21	3.1	21	84	2	78	30	22	16	30	1.96
46655942--46656018	21	3.5	22	80	15	79	38	31	7	22	1.82
46660901--46661436	29	18.2	30	81	7	514	35	1	25	37	1.65
46660868--46661003	58	2.3	58	80	5	141	38	2	25	33	1.71
46660903--46661436	59	9.1	57	81	7	518	35	1	25	37	1.65
46663087--46663244	85	1.9	85	87	2	237	24	24	15	35	1.94
46663083--46663532	209	2.2	209	85	6	583	24	21	17	36	1.94
46663496--46663566	37	1.9	37	91	0	115	25	18	18	38	1.93
46663585--46663691	39	2.7	39	85	0	151	23	19	31	25	1.98
46663706--46663835	40	3.2	40	86	6	199	26	20	20	33	1.97
46664115--46664557	98	4.5	98	82	3	457	18	30	17	33	1.94
46664073--46664557	49	9.9	49	74	6	336	18	30	17	33	1.94
46664073--46664557	197	2.5	196	82	4	548	18	30	17	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46671065--46671410	29	11.6	30	79	6	283	34	3	27	35	1.73
46671065--46671410	60	5.8	59	78	5	304	34	3	27	35	1.73
46673685--46673733	19	2.7	17	80	20	55	48	0	0	51	1.00
46682941--46682984	20	2.1	21	87	8	63	34	0	9	56	1.31
46685731--46685776	15	3.0	15	76	23	51	39	8	6	45	1.61
46689951--46690027	38	2.0	38	100	0	154	41	10	10	37	1.74
46695786--46695836	23	2.2	24	82	10	61	25	9	15	49	1.75
46701937--46703857	640	3.0	639	92	0	3225	30	11	20	37	1.89
46706089--46706130	21	2.0	21	95	0	75	35	19	9	35	1.84
46720664--46720693	10	3.1	10	90	9	53	60	10	10	20	1.57
46726793--46726833	14	3.0	14	89	3	57	31	0	0	68	0.90
46726908--46726987	31	2.6	31	86	5	101	56	2	0	41	1.13
46733026--46733083	25	2.3	27	85	8	77	36	0	0	63	0.94
46738658--46738775	28	4.1	28	67	20	82	30	9	27	32	1.88
46738734--46738864	59	2.2	57	81	10	158	41	8	18	32	1.80
46738821--46738962	59	2.4	58	76	12	146	38	7	17	36	1.77
46738850--46739076	29	7.8	29	74	14	155	37	3	21	37	1.72
46738820--46739069	29	8.6	28	72	13	132	38	4	20	37	1.72
46738918--46739081	59	2.8	57	82	4	186	34	1	25	38	1.67
46741010--46741084	17	4.4	17	73	6	71	50	5	4	40	1.44
46742842--46742900	26	2.3	24	80	16	57	64	0	0	35	0.94
46749013--46749054	21	2.0	21	95	0	75	64	23	0	11	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46770601--46770980	189	2.0	189	100	0	760	29	20	14	35	1.92
46779478--46779538	32	1.9	32	86	6	88	19	24	19	36	1.95
46780598--46780671	25	2.9	25	75	15	62	24	2	4	68	1.19
46791873--46792021	50	3.0	50	81	2	147	36	17	23	22	1.94
46792047--46792345	79	3.8	79	86	0	373	31	25	16	26	1.96
46792047--46792345	39	7.6	40	76	8	220	31	25	16	26	1.96
46792047--46792345	158	1.9	158	86	0	427	31	25	16	26	1.96
46793901--46794076	30	5.9	30	80	2	165	39	18	5	36	1.73
46794096--46794167	26	2.7	29	80	18	84	26	1	4	68	1.16
46794090--46794145	21	2.9	20	80	12	55	25	1	3	69	1.14
46794133--46794172	20	2.0	20	90	0	62	30	0	5	65	1.14
46794096--46794172	29	2.8	27	74	20	70	27	1	5	66	1.21
46795096--46795133	20	1.9	19	89	5	58	68	5	0	26	1.11
46801032--46801104	30	2.4	29	77	8	74	20	15	9	54	1.68
46802669--46802758	34	2.7	31	82	14	101	52	2	0	45	1.13
46802811--46802852	3	14.0	3	100	0	84	33	0	0	66	0.92
46802934--46803017	43	2.0	43	90	0	132	23	19	8	48	1.75
46806273--46806491	97	2.2	98	93	0	368	36	13	15	35	1.86
46808556--46808590	18	1.9	18	88	0	52	54	5	0	40	1.24
46811790--46811916	66	1.9	65	90	1	200	36	14	13	36	1.85
46816544--46816578	13	2.8	13	91	4	54	80	2	0	17	0.84
46816544--46816578	6	5.7	6	86	6	52	80	2	0	17	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46819457--46819551	27	3.3	28	73	15	95	28	14	10	46	1.78
46819426--46819588	59	2.7	59	85	6	188	26	13	11	47	1.77
46821506--46821542	19	2.0	19	89	5	58	10	8	2	78	1.06
46822557--46822604	3	16.0	3	100	0	96	66	0	0	33	0.92
46823710--46823758	21	2.3	22	85	3	64	55	4	0	40	1.19
46825560--46825597	18	2.1	18	95	0	67	13	15	23	47	1.81
46826966--46827104	43	3.2	43	93	2	235	17	30	25	25	1.97
46827418--46827455	11	3.5	11	80	20	53	0	47	23	28	1.52
46827404--46827456	21	2.5	21	93	0	88	0	47	20	32	1.51
46827452--46827598	66	2.2	66	86	3	208	17	23	15	44	1.86
46832519--46832560	22	2.0	21	95	4	75	52	7	0	40	1.29
46832556--46832972	48	8.6	48	93	1	681	45	4	0	49	1.24
46832622--46833006	8	43.6	9	65	25	116	46	4	0	49	1.21
46832555--46832972	97	4.3	96	92	1	674	45	4	0	49	1.24
46832556--46832972	145	2.9	145	95	0	744	45	4	0	49	1.24
46832557--46832906	30	10.9	31	68	13	156	45	4	0	49	1.26
46834519--46834664	44	3.3	43	83	6	168	30	5	47	17	1.70
46834519--46834587	23	3.1	23	64	29	58	27	5	50	15	1.67
46834533--46834603	23	3.2	22	68	22	58	26	5	56	11	1.56
46834653--46834725	26	2.9	24	86	9	110	23	4	41	31	1.73
46834653--46834729	25	3.0	25	86	3	118	23	3	41	31	1.72
46834840--46835152	42	7.4	41	72	15	185	22	26	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46835008--46835108	52	1.9	53	85	2	141	20	28	27	22	1.99
46834967--46835148	93	2.0	93	84	6	244	19	27	27	25	1.99
46835117--46835230	40	2.8	39	79	10	131	20	26	23	29	1.99
46841906--46842037	70	1.9	67	81	6	158	31	10	12	44	1.77
46845677--46845738	6	10.3	6	75	6	54	51	16	12	19	1.76
46845677--46845741	18	3.6	18	73	8	69	52	15	12	20	1.74
46851382--46851517	29	4.7	29	77	13	120	37	2	27	31	1.72
46851345--46851517	59	2.9	58	88	5	258	35	4	28	31	1.76
46851613--46852114	162	3.1	162	89	1	736	43	12	17	26	1.84
46853059--46853095	9	4.1	9	100	0	74	43	0	0	56	0.99
46853062--46853103	18	2.3	18	91	0	66	42	2	2	52	1.27
46853850--46853897	6	7.5	6	80	13	51	33	0	4	62	1.14
46853858--46853949	6	15.2	6	76	15	73	45	0	4	50	1.21
46853872--46853949	11	7.1	11	75	8	61	47	0	3	48	1.20
46853872--46853947	17	4.6	17	80	9	86	47	0	3	48	1.20
46853887--46853957	17	4.4	16	82	12	65	52	1	4	42	1.29
46854245--46854828	76	7.8	76	89	4	852	34	17	14	33	1.90
46854245--46854828	151	3.9	151	91	2	914	34	17	14	33	1.90
46867062--46867154	29	3.2	29	68	22	77	39	2	25	32	1.68
46866999--46867389	58	6.9	58	81	9	457	35	3	29	31	1.76
46867028--46867125	30	3.3	29	70	18	76	39	3	28	28	1.72
46867205--46867358	29	5.3	28	73	23	140	32	3	31	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46867158--46867251	46	2.0	46	87	6	136	26	6	32	34	1.82
46867061--46867366	163	1.9	163	90	2	490	33	3	30	32	1.76
46867226--46867387	29	5.5	29	74	20	158	34	3	30	32	1.73
46867513--46867985	162	2.9	161	91	1	723	44	11	16	26	1.82
46869653--46869847	29	6.8	29	71	13	143	33	4	31	31	1.77
46869661--46869813	29	5.2	29	73	15	145	35	3	30	30	1.76
46869653--46869818	59	2.9	57	88	6	244	33	4	31	30	1.79
46869826--46870269	30	14.8	30	92	2	664	34	2	24	38	1.69
46870123--46870177	19	3.3	19	63	36	54	29	3	27	40	1.73
46871345--46871374	12	2.5	12	88	0	51	40	0	3	56	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171