genome.fa.s3.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  162  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48181364--48181470	9	11.6	9	73	18	78	31	0	0	66	1.04
48181376--48181469	19	5.2	17	71	17	66	31	1	1	65	1.06
48181572--48181733	88	1.8	88	81	7	204	35	9	15	40	1.79
48181956--48182008	27	1.9	28	84	3	72	32	1	1	64	1.15
48183016--48183103	12	7.2	12	71	13	54	42	14	13	29	1.84
48182993--48183081	23	3.7	23	82	7	81	41	16	10	31	1.82
48183061--48183087	14	1.9	14	100	0	54	33	14	14	37	1.88
48189972--48190007	15	2.4	15	95	0	63	66	0	8	25	1.19
48192137--48192191	23	2.3	24	84	6	67	74	1	3	20	1.06
48192135--48192193	24	2.5	24	80	5	66	74	1	3	20	1.05
48199066--48199092	8	3.4	8	100	0	54	40	0	0	59	0.98
48201746--48201866	7	17.6	7	71	13	81	48	34	0	16	1.46
48201734--48201783	21	2.4	21	86	3	66	46	36	0	18	1.49
48201746--48201866	48	2.5	48	81	5	154	48	34	0	16	1.46
48201787--48201866	41	2.0	41	82	9	101	50	35	0	15	1.44
48201856--48201926	21	3.3	21	75	13	65	49	25	0	25	1.51
48201885--48201965	21	3.9	21	78	3	74	50	27	0	22	1.49
48201928--48202001	28	2.6	27	70	8	67	47	27	1	24	1.60
48201998--48202050	14	3.8	14	82	9	63	60	24	0	15	1.35
48202026--48202070	21	2.1	21	91	0	72	57	24	2	15	1.49
48205126--48205229	55	1.9	55	93	0	181	29	9	11	49	1.71
48210513--48210574	28	2.2	28	80	11	72	27	1	8	62	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48210596--48210665	23	3.0	22	75	10	68	31	12	12	42	1.81
48210649--48210694	23	2.0	23	83	8	58	43	10	13	32	1.78
48216320--48216374	27	2.0	27	85	0	74	29	5	23	41	1.76
48226630--48226678	21	2.5	20	81	15	57	65	2	2	30	1.15
48239057--48239089	14	2.4	14	90	5	50	42	0	3	54	1.15
48239477--48239570	30	3.2	29	74	17	95	28	32	7	30	1.85
48239471--48239720	58	4.3	60	79	7	248	30	29	7	33	1.84
48239470--48239626	30	5.4	30	66	19	89	30	29	5	34	1.81
48239646--48239716	29	2.5	28	77	11	72	26	30	9	32	1.89
48239491--48239716	59	3.9	58	79	5	158	30	29	7	32	1.84
48242008--48242047	15	2.7	15	84	0	53	32	0	2	65	1.06
48243584--48243631	25	1.9	25	91	0	78	25	12	6	56	1.59
48247504--48247687	43	4.3	43	86	2	228	29	29	15	24	1.96
48256303--48256330	7	4.0	7	100	0	56	85	0	0	14	0.59
48269195--48269257	24	2.6	24	87	0	90	50	6	14	28	1.67
48269342--48269556	105	2.0	105	100	0	430	45	12	12	29	1.79
48279515--48279556	22	2.0	22	90	4	68	64	2	0	33	1.07
48281319--48281821	161	3.1	161	90	2	765	27	17	11	43	1.84
48281940--48282220	29	9.8	29	73	16	166	36	28	1	33	1.66
48282035--48282137	30	3.5	30	70	20	92	38	23	1	35	1.66
48281946--48282299	116	3.1	115	83	7	448	35	29	2	33	1.71
48281946--48282299	59	6.1	58	82	9	400	35	29	2	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48282209--48282301	28	3.2	28	69	13	80	32	29	5	33	1.80
48281946--48282299	58	6.1	59	82	9	397	35	29	2	33	1.71
48282206--48282352	59	2.5	55	79	16	147	27	29	7	34	1.84
48294391--48294725	76	4.4	76	88	0	474	33	14	17	34	1.90
48294696--48294754	29	2.0	29	96	0	109	32	18	8	40	1.81
48294620--48294830	105	2.0	105	87	1	307	33	15	15	36	1.88
48294544--48294905	181	2.0	180	88	3	541	33	15	16	34	1.91
48294725--48295169	76	5.8	76	90	2	680	33	15	17	33	1.92
48295461--48295524	6	11.0	6	77	12	71	46	4	0	48	1.23
48295462--48295503	23	1.9	21	90	9	66	42	4	0	52	1.22
48295483--48295531	12	3.9	12	86	2	53	53	4	0	42	1.20
48296992--48297490	162	3.1	162	91	0	784	26	17	12	43	1.85
48297563--48297750	29	6.5	28	77	14	116	37	26	2	33	1.69
48297593--48297871	29	9.7	28	76	15	200	34	30	2	32	1.71
48297619--48297874	59	4.4	57	80	10	277	34	31	2	32	1.71
48297564--48297866	87	3.5	86	78	12	273	35	28	2	33	1.71
48297563--48297843	116	2.4	117	85	5	367	36	29	2	31	1.71
48297736--48297866	28	4.5	28	71	10	86	34	30	3	32	1.73
48297592--48297909	116	2.7	114	81	9	340	33	30	3	32	1.75
48304228--48304274	20	2.4	19	82	6	58	72	10	4	12	1.25
48304228--48304269	20	2.1	20	86	8	59	73	11	2	11	1.18
48304370--48304440	28	2.5	28	81	9	72	45	9	2	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48310951--48310986	3	11.7	3	88	5	54	33	30	0	36	1.58
48325842--48325876	3	11.7	3	100	0	70	68	0	0	31	0.90
48326267--48326452	93	2.0	93	98	0	363	24	23	39	12	1.90
48326705--48326730	13	2.0	13	100	0	52	46	15	7	30	1.74
48332672--48332703	5	6.6	5	92	7	57	37	62	0	0	0.95
48337832--48337891	26	2.3	24	76	15	66	23	0	10	66	1.21
48345678--48345707	15	1.9	16	93	6	53	53	6	0	40	1.27
48352980--48353034	26	2.1	27	86	10	78	45	0	1	52	1.11
48353551--48353612	16	3.7	16	79	16	63	66	3	0	30	1.08
48353567--48353612	23	2.0	23	86	0	65	67	4	0	28	1.10
48353736--48353776	18	2.2	19	86	4	57	24	0	0	75	0.80
48357577--48357864	148	1.9	147	83	6	368	44	11	20	24	1.83
48359235--48359373	69	2.0	69	100	0	278	36	18	7	37	1.79
48359945--48360025	43	1.9	42	89	2	126	38	20	7	33	1.81
48361463--48361536	28	2.6	28	76	2	76	31	24	21	22	1.99
48361835--48361867	16	2.1	16	94	0	57	33	6	9	51	1.58
48362301--48362550	83	3.0	84	92	0	403	30	8	18	42	1.81
48365273--48365310	17	2.3	16	90	4	58	47	2	0	50	1.15
48366090--48366145	21	2.8	19	82	15	69	48	0	3	48	1.19
48366090--48366146	19	2.9	19	85	12	71	47	0	3	49	1.18
48367338--48367485	30	4.9	30	79	5	165	37	22	1	38	1.63
48367338--48367488	59	2.5	59	82	2	194	38	21	1	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48367315--48367480	89	1.9	90	88	3	255	37	18	3	40	1.66
48367464--48367623	59	2.8	57	77	9	162	28	20	8	43	1.80
48367307--48367515	89	2.3	89	78	4	208	35	20	4	39	1.72
48367464--48367623	58	2.8	56	79	7	167	28	20	8	43	1.80
48379482--48380669	92	12.9	92	96	0	2124	31	14	19	34	1.92
48380936--48380980	11	4.0	11	85	5	63	42	0	2	55	1.12
48380936--48380997	17	3.7	16	85	12	72	43	0	1	54	1.09
48380936--48380979	6	7.7	6	82	10	56	43	0	2	54	1.12
48381734--48381789	21	2.8	19	82	15	69	48	0	3	48	1.19
48381734--48381790	19	2.9	19	85	12	71	47	0	3	49	1.18
48382985--48383155	30	5.7	30	78	6	152	40	21	2	34	1.68
48383016--48383160	59	2.4	58	87	5	209	40	23	3	33	1.71
48383201--48383305	29	3.6	28	73	17	90	37	25	3	33	1.74
48384598--48384670	36	2.0	36	83	0	92	28	17	17	35	1.93
48385978--48386042	6	11.2	6	84	12	91	46	3	0	50	1.17
48385968--48386042	17	4.4	16	88	9	105	45	2	1	50	1.24
48385978--48386040	23	2.8	22	79	15	83	44	3	0	52	1.17
48385968--48386042	12	6.6	11	80	6	71	45	2	1	50	1.24
48387059--48387097	13	2.9	14	85	11	55	74	0	25	0	0.82
48387773--48388007	30	7.9	30	91	1	375	38	25	2	33	1.71
48387831--48387885	15	3.3	19	63	36	54	40	27	3	29	1.73
48387773--48388007	59	3.9	59	93	1	380	38	25	2	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48388020--48388110	28	3.1	29	73	16	98	30	27	4	37	1.76
48392133--48392174	21	2.0	20	86	13	59	35	2	4	57	1.33
48392479--48392505	14	1.9	14	100	0	54	22	11	14	51	1.73
48400688--48400725	20	1.9	20	88	0	58	31	23	15	28	1.96
48409858--48409981	50	2.5	49	75	12	128	33	15	33	17	1.91
48410005--48410129	49	2.5	50	79	5	146	35	17	32	15	1.91
48409866--48410129	99	2.7	98	77	2	294	33	15	33	17	1.91
48410133--48410696	99	5.7	99	78	6	446	35	17	30	16	1.92
48410133--48410664	49	10.8	49	69	8	281	35	17	30	16	1.92
48410133--48410696	296	1.9	296	81	5	692	35	17	30	16	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171