genome.fa.s3.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  46  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19581920--19581976	27	2.0	27	86	6	78	28	12	10	49	1.73
19586443--19586476	2	17.0	2	100	0	68	50	0	0	50	1.00
19599013--19599048	19	1.9	18	88	5	54	61	0	2	36	1.11
19601333--19601360	2	14.0	2	100	0	56	50	0	0	50	1.00
19608053--19608089	16	2.3	17	86	9	51	45	0	0	54	1.00
19609588--19609909	29	10.9	29	71	17	186	36	1	26	35	1.66
19609589--19609777	59	3.2	57	80	13	199	39	1	25	34	1.63
19609589--19609905	30	10.8	28	70	18	150	36	1	25	35	1.66
19609746--19609904	59	2.7	57	85	7	194	33	1	25	38	1.67
19611568--19611615	25	1.9	25	91	0	78	16	14	47	20	1.82
19611846--19611910	17	3.8	17	76	8	69	47	3	1	47	1.27
19611846--19611910	34	1.9	33	87	3	94	47	3	1	47	1.27
19612270--19612991	200	3.6	200	91	2	1077	20	23	20	35	1.96
19613299--19613486	49	3.8	49	88	2	270	12	25	22	39	1.90
19613298--19613532	98	2.4	99	83	5	289	13	25	22	38	1.91
19613324--19613532	49	4.3	48	84	4	181	13	25	20	39	1.90
19614599--19614678	23	3.5	22	80	11	81	2	11	5	81	0.95
19614599--19614637	14	2.9	13	85	7	51	2	5	5	87	0.75
19619010--19619036	5	5.4	5	100	0	54	37	0	44	18	1.50
19619665--19619710	22	2.2	22	84	7	69	71	4	0	23	1.03
19621289--19621340	19	2.8	19	77	13	54	63	3	0	32	1.12
19622164--19622205	19	2.3	19	87	4	59	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19623213--19623339	31	4.2	31	69	17	97	27	15	10	46	1.78
19631613--19631648	16	2.1	16	90	10	54	44	0	0	55	0.99
19632094--19632136	21	2.0	21	83	16	54	67	4	0	27	1.10
19633235--19633315	30	2.7	31	81	7	96	23	12	19	44	1.85
19635266--19635298	14	2.2	16	89	10	52	27	0	6	66	1.15
19636371--19636403	16	2.0	17	94	5	59	63	0	0	36	0.95
19647068--19647099	15	2.1	15	100	0	64	43	12	18	25	1.85
19650611--19650671	29	2.1	30	82	14	74	31	1	8	59	1.37
19650787--19650840	25	2.1	25	83	10	65	42	9	0	48	1.35
19650802--19650851	25	2.0	25	84	7	66	40	8	2	50	1.43
19651382--19651510	52	2.5	51	81	5	134	38	6	2	51	1.42
19652192--19652216	4	6.2	4	100	0	50	24	28	0	48	1.52
19665871--19666130	61	4.2	61	75	13	237	27	15	14	42	1.86
19665757--19666097	118	2.8	119	80	9	320	26	18	14	39	1.90
19665804--19666098	59	4.9	60	72	10	199	27	17	14	40	1.89
19666022--19666159	62	2.2	61	79	6	143	27	20	13	39	1.89
19665804--19666159	59	5.9	61	73	10	156	28	17	14	40	1.88
19668514--19669016	61	8.5	57	77	8	402	35	16	19	28	1.93
19668514--19668982	120	3.9	118	75	10	411	36	15	18	29	1.92
19668568--19669019	117	3.8	116	77	11	420	36	15	19	28	1.93
19669360--19669438	38	2.1	38	100	0	158	31	15	18	34	1.92
19672164--19672580	181	2.3	181	80	5	475	45	16	14	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19672566--19672594	14	2.1	14	100	0	58	58	6	27	6	1.50
19678904--19678955	28	2.0	25	81	11	59	71	7	7	13	1.31
19683763--19683805	21	2.0	21	95	0	77	51	4	20	23	1.66
19687586--19687629	22	2.0	22	95	0	79	40	29	4	25	1.75
19690025--19690064	18	2.2	18	100	0	80	25	5	27	42	1.75
19693764--19693790	7	3.9	7	100	0	54	70	0	0	29	0.88
19693913--19693970	30	1.9	30	89	6	91	51	0	0	48	1.00
19699464--19699541	40	2.0	40	92	0	129	29	11	24	34	1.91
19721535--19721749	28	7.5	28	71	13	132	34	1	30	33	1.67
19721495--19721751	59	4.4	59	86	9	332	33	1	30	34	1.67
19721614--19721763	30	5.1	29	75	16	132	35	0	28	35	1.63
19722134--19722174	15	2.7	15	92	0	64	7	19	56	17	1.64
19722642--19722666	13	1.9	13	100	0	50	40	0	0	60	0.97
19722761--19722808	24	2.0	24	95	0	87	45	14	4	35	1.64
19734488--19734581	29	3.2	29	69	16	77	32	1	30	35	1.65
19734472--19734627	30	5.3	31	65	21	93	37	1	28	33	1.65
19734468--19734729	59	4.4	58	81	8	278	36	1	27	34	1.68
19734484--19734729	118	2.1	119	86	0	341	35	1	27	34	1.67
19734592--19734687	30	3.2	30	68	22	76	39	3	23	33	1.71
19735463--19735492	14	2.2	14	94	5	53	0	16	0	83	0.65
19735977--19736024	24	2.0	24	95	0	87	45	14	4	35	1.64
19736764--19736822	6	9.8	6	75	14	59	54	0	5	40	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19736765--19736822	17	3.6	17	79	13	77	55	0	5	39	1.22
19736802--19736833	11	2.9	11	95	0	55	59	3	0	37	1.13
19737033--19737100	30	2.3	29	82	5	82	45	0	0	54	0.99
19738792--19738825	17	2.0	17	94	0	59	35	0	32	32	1.58
19745889--19746029	43	3.3	43	95	1	248	29	29	19	22	1.98
19747444--19747521	35	2.3	35	97	2	149	38	19	20	21	1.94
19747509--19747734	43	5.3	43	92	1	357	27	30	18	23	1.98
19749172--19749397	43	5.3	43	92	1	357	27	30	18	23	1.97
19752389--19752730	41	8.4	41	83	3	406	17	25	23	33	1.96
19752409--19752482	24	3.4	24	63	24	63	16	28	24	31	1.96
19752389--19752730	123	2.8	123	85	3	465	17	25	23	33	1.96
19754240--19754301	23	2.7	23	82	2	70	66	6	4	22	1.35
19756838--19757173	173	2.0	171	92	2	557	36	9	12	41	1.75
19758265--19758580	41	7.8	42	77	6	246	22	25	30	21	1.99
19758203--19758580	40	9.4	39	76	8	230	24	25	29	20	1.99
19758605--19758644	5	7.8	5	88	5	53	57	0	0	42	0.98
19758605--19758643	16	2.5	16	83	4	53	58	0	0	41	0.98
19758602--19758642	21	2.0	21	95	0	73	56	0	0	43	0.99
19758604--19758649	21	2.2	21	88	0	65	63	0	0	36	0.95
19758658--19758693	18	2.0	18	88	0	54	19	52	8	19	1.70
19758695--19759760	358	3.0	358	97	1	2014	19	22	13	43	1.87
19761945--19762104	8	17.6	9	66	22	52	43	1	5	49	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19761947--19762232	18	15.3	18	66	20	90	43	2	6	48	1.40
19762057--19762104	17	2.8	17	77	3	60	45	0	2	52	1.12
19761888--19762263	112	3.3	111	94	4	664	43	2	6	47	1.43
19762256--19762292	12	3.2	12	85	14	51	40	2	0	56	1.13
19762310--19762346	18	2.1	18	89	0	56	37	0	0	62	0.96
19762395--19762461	33	2.1	33	94	2	118	44	5	5	43	1.53
19767977--19768035	21	2.8	20	79	5	64	38	23	37	0	1.55
19783320--19783350	14	2.3	13	94	5	53	0	9	0	90	0.46
19786216--19786279	26	2.4	27	82	5	78	62	17	7	12	1.52
19794135--19794263	65	2.0	66	85	1	179	37	8	13	40	1.76
19799612--19799695	42	2.0	42	88	0	123	19	36	10	33	1.86
19801685--19801724	17	2.5	15	81	14	53	57	2	2	37	1.26
19802283--19802349	28	2.4	27	74	18	64	37	7	0	55	1.28
19804955--19804994	11	3.7	11	84	15	57	42	0	7	50	1.30
19809284--19809379	32	3.0	32	75	15	99	18	12	15	53	1.73
19823651--19823778	63	2.0	63	100	0	256	28	30	10	30	1.91
19831954--19831980	6	4.5	6	100	0	54	37	18	29	14	1.91
19835991--19836023	4	8.2	4	100	0	66	48	0	0	51	1.00
19839037--19839066	6	5.0	6	100	0	60	0	33	33	33	1.58
19839912--19839949	20	1.9	20	88	0	58	68	2	2	26	1.16
19846938--19846967	6	5.0	6	100	0	60	0	0	16	83	0.65
19849423--19849447	6	4.2	6	100	0	50	48	0	36	16	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19850409--19850470	30	2.1	28	82	5	70	25	25	4	43	1.74
19857910--19857956	21	2.3	21	89	7	71	46	6	0	46	1.28
19857920--19857965	20	2.3	20	85	7	58	50	4	0	45	1.21
19861030--19861060	5	6.2	5	100	0	62	0	61	0	38	0.96
19872753--19872880	24	5.3	24	86	0	175	43	10	34	10	1.75
19872753--19872880	48	2.7	48	88	0	193	43	10	34	10	1.75
19875852--19875925	28	2.6	29	79	14	91	56	2	5	35	1.36
19882273--19882305	2	16.5	2	93	0	57	48	0	51	0	1.00
19887426--19887487	30	2.0	31	87	3	90	24	20	20	33	1.97
19904727--19904808	41	2.0	41	88	6	123	24	12	18	45	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171