genome.fa.s3.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  160  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47587568--47587900	59	5.7	58	75	7	280	36	3	23	36	1.72
47587588--47587896	29	10.6	29	76	11	245	37	2	22	37	1.68
47588739--47588763	12	2.1	12	100	0	50	40	0	0	60	0.97
47589225--47589268	20	2.2	20	100	0	88	9	4	40	45	1.56
47589474--47589540	6	11.7	6	71	15	52	50	1	4	43	1.31
47589474--47589518	18	2.6	18	89	3	65	51	2	4	42	1.34
47589517--47589558	17	2.4	18	84	11	61	52	4	4	38	1.44
47591534--47591594	31	1.9	33	83	6	81	16	3	3	77	1.04
47591528--47591583	14	3.8	14	75	13	58	17	1	1	78	0.92
47592337--47592390	27	2.0	28	85	3	74	55	0	0	44	0.99
47592688--47592884	59	3.3	58	82	5	223	27	11	11	49	1.73
47593081--47593164	31	2.8	30	78	10	91	52	5	10	30	1.60
47593966--47594166	100	2.0	99	99	0	393	59	7	7	24	1.51
47601793--47601857	28	2.3	29	81	10	80	41	12	1	44	1.51
47604659--47604745	23	3.7	23	75	6	77	6	4	20	67	1.32
47604659--47604744	12	7.3	12	72	5	68	6	4	19	68	1.31
47608748--47608809	30	2.0	30	84	6	79	45	8	0	46	1.32
47612925--47612969	6	7.5	6	89	0	63	46	0	31	22	1.52
47615338--47615374	3	12.3	3	100	0	74	32	0	0	67	0.91
47615990--47616048	24	2.5	23	78	8	64	27	1	1	69	1.07
47616005--47616048	17	2.5	18	88	3	63	25	0	0	75	0.81
47618107--47618435	89	3.7	87	83	8	369	37	23	1	38	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47618110--47618436	30	11.0	29	80	8	345	37	22	1	38	1.64
47618109--47618436	59	5.5	58	79	10	322	37	22	1	38	1.64
47623207--47623286	17	4.6	17	87	1	106	35	0	6	58	1.23
47623207--47623299	17	5.8	17	75	12	97	36	0	5	58	1.21
47623225--47623340	23	5.0	23	75	10	101	38	0	6	53	1.34
47623208--47623299	6	16.0	6	75	8	66	36	0	5	57	1.22
47623918--47623962	24	1.9	23	86	13	65	42	2	0	55	1.12
47625046--47625371	30	11.2	28	74	16	197	36	23	2	38	1.67
47625056--47625393	29	11.6	28	77	11	256	36	23	2	37	1.67
47625055--47625394	116	2.9	115	80	10	352	36	24	2	37	1.67
47625083--47625477	29	13.6	28	71	12	187	34	23	3	37	1.72
47626725--47626894	85	2.0	85	100	0	340	43	17	17	21	1.88
47628019--47628680	49	13.5	48	72	11	416	38	17	25	18	1.92
47628019--47628651	98	6.4	98	85	2	804	38	17	25	18	1.93
47628960--47629062	46	2.3	46	85	6	138	37	25	14	22	1.92
47629925--47629960	11	3.3	11	84	0	54	77	11	0	11	0.99
47630991--47631193	59	3.5	59	87	4	284	34	27	1	35	1.68
47630991--47631194	29	7.0	29	86	4	257	34	27	2	35	1.70
47630991--47631223	59	4.0	58	81	5	220	33	27	2	36	1.71
47636221--47636282	20	3.2	19	75	8	63	59	29	0	11	1.32
47641540--47641657	60	2.0	60	84	3	157	33	21	12	32	1.91
47641606--47641896	52	5.6	52	88	0	411	37	23	12	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47643785--47644046	138	1.9	139	85	7	372	26	18	4	50	1.67
47643785--47644092	138	2.2	139	81	7	333	25	17	4	51	1.65
47651192--47651228	19	1.9	19	100	0	74	37	27	13	21	1.91
47679399--47679433	16	2.1	17	89	5	54	68	11	5	14	1.37
47683678--47683731	19	2.9	19	86	2	65	53	5	0	40	1.24
47691336--47691878	29	18.5	30	69	14	140	34	4	25	35	1.78
47691359--47691794	59	7.4	58	77	7	323	34	5	25	34	1.80
47691674--47691908	88	2.7	89	78	10	234	32	2	27	37	1.72
47691449--47691789	175	1.9	177	82	5	433	35	4	24	35	1.77
47691723--47691908	59	3.2	58	79	6	198	32	2	26	38	1.69
47691394--47691911	29	17.7	29	66	17	171	35	4	24	35	1.75
47691713--47691950	29	8.1	29	75	10	155	33	3	26	36	1.73
47691807--47691928	59	2.1	59	81	3	138	36	4	22	37	1.73
47693582--47693676	17	5.5	17	81	2	109	56	5	3	34	1.37
47693988--47694492	209	2.4	208	82	3	559	22	23	18	36	1.95
47694299--47694616	123	2.6	123	86	2	406	21	23	18	35	1.96
47694090--47694776	332	2.1	332	89	2	1049	22	23	18	35	1.95
47694412--47694991	209	2.8	209	88	1	849	22	22	18	36	1.95
47706971--47707224	29	8.7	29	68	15	130	32	7	26	33	1.84
47706970--47707388	59	7.2	59	76	6	318	34	5	25	33	1.81
47706970--47707223	117	2.2	116	80	2	267	32	7	26	33	1.84
47707146--47707369	117	1.9	117	86	1	315	35	4	24	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47707275--47707389	30	3.9	30	76	13	112	36	2	24	36	1.69
47707205--47707397	29	6.6	30	69	20	106	36	3	23	36	1.71
47708081--47708159	17	4.6	17	80	3	95	56	5	3	34	1.39
47708078--47708158	24	3.3	23	68	21	65	54	4	3	37	1.40
47720532--47720734	100	2.0	100	97	0	379	37	21	9	31	1.86
47723363--47723447	38	2.2	37	80	10	91	25	15	24	34	1.95
47726990--47727032	15	3.1	14	77	16	54	0	32	0	67	0.91
47734534--47734565	16	2.0	17	88	11	50	71	9	12	6	1.29
47741950--47742012	22	2.9	23	83	9	87	49	14	17	19	1.80
47747756--47747935	52	3.5	51	88	3	261	26	14	24	35	1.94
47752840--47753029	52	3.7	52	86	0	256	25	15	25	33	1.95
47753559--47753598	21	1.9	21	89	0	62	30	17	20	32	1.95
47762922--47762966	19	2.3	20	85	14	67	31	0	2	66	1.04
47763697--47763997	100	3.0	100	95	0	525	27	10	27	33	1.90
47765541--47765599	25	2.2	27	85	8	77	27	10	5	57	1.52
47767262--47767578	29	10.8	29	68	17	158	35	2	27	34	1.72
47767252--47767540	59	4.9	59	85	4	377	36	2	28	32	1.69
47767410--47767513	31	3.5	31	75	20	114	36	0	29	32	1.64
47767508--47767601	29	3.2	29	77	11	84	29	7	23	39	1.82
47767262--47767578	59	5.4	59	82	7	324	35	2	27	34	1.72
47767252--47767599	176	2.0	177	85	2	468	35	3	27	33	1.74
47769357--47769411	24	2.3	24	96	0	101	27	21	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47769463--47769518	17	3.3	17	74	18	62	51	5	1	41	1.35
47769463--47769538	34	2.2	35	81	6	93	51	6	1	40	1.36
47769794--47769847	27	2.0	27	85	3	74	61	3	27	7	1.40
47769904--47769947	21	2.1	21	95	0	79	34	9	2	54	1.44
47770913--47770957	17	2.8	16	80	6	54	55	2	0	42	1.12
47772082--47772599	29	17.6	29	85	6	537	33	24	3	38	1.72
47772082--47772575	59	8.4	58	83	6	498	34	24	3	38	1.72
47776170--47776607	81	5.4	81	83	6	548	27	19	35	16	1.94
47776331--47776404	24	3.4	24	63	24	63	25	21	36	16	1.94
47776170--47776624	41	11.2	41	85	5	527	28	20	34	16	1.94
47776170--47776624	118	3.8	117	81	7	416	28	20	34	16	1.94
47780545--47780804	42	6.1	43	85	3	314	28	19	26	26	1.99
47780561--47780805	85	2.9	84	85	5	332	28	21	25	25	1.99
47788125--47788310	52	3.6	52	91	0	291	23	15	26	34	1.94
47795863--47795931	32	2.2	32	100	0	138	21	24	14	39	1.91
47798721--47798759	17	2.3	17	90	0	60	46	25	12	15	1.81
47802922--47802973	18	2.6	19	77	22	54	28	1	3	65	1.21
47804654--47804679	6	4.3	6	100	0	52	50	0	0	50	1.00
47826063--47826119	21	2.7	21	94	0	96	19	14	24	42	1.88
47832833--47832874	19	2.2	20	83	12	52	26	2	2	69	1.13
47839773--47839999	29	7.8	28	67	16	95	35	7	25	31	1.83
47839848--47840174	59	5.6	59	78	7	317	38	6	23	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47839857--47840204	117	2.9	116	78	8	355	39	5	23	31	1.78
47839780--47840238	59	7.8	58	76	10	269	37	5	24	32	1.78
47840156--47840265	29	3.8	29	88	1	157	36	1	22	39	1.65
47839955--47840273	29	10.9	28	70	11	133	37	4	23	34	1.75
47841399--47841443	19	2.4	19	81	7	56	37	0	4	57	1.19
47843217--47843445	58	4.0	58	81	11	174	33	6	28	31	1.83
47843279--47843470	29	6.6	29	78	9	194	33	5	27	33	1.81
47843279--47843476	87	2.2	89	84	6	260	33	5	27	33	1.80
47843279--47843470	59	3.3	58	82	9	237	33	5	27	33	1.81
47843771--47843837	32	2.1	33	83	8	84	61	7	10	20	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171