genome.fa.s3.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  159  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47284872--47284896	11	2.3	11	100	0	50	44	44	0	12	1.41
47290044--47290105	23	2.7	23	77	2	63	50	1	3	45	1.27
47290836--47290881	21	2.2	21	88	0	65	10	4	17	67	1.37
47290859--47290923	24	2.6	25	85	4	87	12	4	12	70	1.30
47290878--47290929	12	4.3	12	75	0	59	9	3	15	71	1.27
47290936--47290987	23	2.3	23	83	6	61	17	7	7	67	1.39
47310724--47310752	15	2.0	15	93	6	51	55	0	0	44	0.99
47316545--47316587	21	2.0	21	100	0	86	18	4	27	48	1.68
47320011--47320058	24	1.9	26	84	16	66	45	0	22	31	1.53
47320119--47320248	22	5.5	22	82	7	107	12	23	22	42	1.87
47320181--47320259	26	3.0	26	96	0	149	8	30	21	39	1.84
47321049--47321106	24	2.4	23	86	11	73	67	0	3	29	1.07
47321625--47321663	16	2.5	16	83	4	53	33	0	0	66	0.92
47323892--47323935	11	4.0	11	78	0	52	70	15	9	4	1.30
47327396--47327488	31	3.0	31	87	1	134	26	11	11	49	1.74
47328077--47328117	3	13.7	3	86	0	55	58	0	39	2	1.11
47328336--47328364	2	14.5	2	100	0	58	51	0	0	48	1.00
47328543--47328598	23	2.7	21	78	10	62	42	0	5	51	1.24
47340398--47340467	31	2.3	31	85	7	90	37	1	0	61	1.05
47341209--47341233	2	12.5	2	100	0	50	48	0	0	52	1.00
47343225--47343280	28	2.0	28	96	0	103	37	10	16	35	1.83
47352631--47352657	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47352657--47352697	2	20.5	2	100	0	82	51	0	48	0	1.00
47354104--47354151	18	2.6	19	78	12	55	50	0	0	50	1.00
47355338--47355397	2	30.5	2	96	3	113	50	0	0	50	1.00
47356121--47356286	60	2.8	57	79	7	183	22	14	12	50	1.77
47356497--47356580	31	2.7	30	85	7	114	51	11	10	26	1.71
47356563--47356613	25	2.0	25	85	7	68	64	13	1	19	1.37
47356497--47356626	31	4.4	30	76	12	108	53	12	8	25	1.66
47362032--47362089	23	2.5	24	80	5	57	27	20	20	31	1.98
47362810--47362840	9	3.4	9	90	0	53	0	12	0	87	0.55
47362847--47362871	10	2.5	10	100	0	50	0	8	0	92	0.40
47362813--47362882	37	2.0	34	83	8	86	7	17	4	71	1.25
47363543--47363605	31	2.0	31	90	3	99	46	17	11	25	1.81
47363851--47363901	23	2.1	24	85	7	68	64	0	5	29	1.17
47372450--47372800	30	11.8	29	83	4	328	39	1	24	34	1.66
47372451--47372802	59	5.9	59	83	4	368	38	1	24	34	1.66
47373365--47373402	16	2.3	16	90	4	58	13	7	0	78	0.94
47374739--47374934	97	2.0	97	89	0	302	31	20	16	32	1.95
47375084--47375349	98	2.7	98	84	5	367	18	25	16	39	1.92
47375044--47375354	49	6.4	48	74	8	259	18	26	16	39	1.91
47380394--47380507	29	3.9	29	94	0	201	49	9	14	27	1.74
47381371--47381704	30	11.1	30	81	7	207	38	2	25	33	1.70
47381356--47381731	60	6.3	58	78	7	290	39	2	23	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47381410--47381731	30	10.8	29	82	6	326	38	1	24	35	1.67
47382370--47382402	10	3.7	9	88	11	50	12	6	0	81	0.85
47394340--47394389	10	4.8	10	73	26	50	46	12	0	42	1.41
47397523--47397559	12	2.9	13	88	8	58	29	0	0	70	0.88
47397619--47397678	15	4.0	14	75	14	57	35	1	3	60	1.23
47397621--47397678	23	2.5	22	75	8	62	34	1	3	60	1.24
47397965--47398031	37	1.9	32	82	14	80	59	2	1	35	1.22
47401978--47402017	20	2.0	20	85	4	55	42	2	2	52	1.28
47402510--47402549	20	1.9	20	85	10	53	52	5	5	37	1.45
47415586--47415634	18	2.8	18	78	12	57	30	14	30	24	1.94
47415595--47415626	17	1.9	16	93	6	55	21	18	34	25	1.96
47418511--47418688	74	2.4	73	82	8	193	25	30	17	26	1.97
47435610--47435645	18	2.0	18	94	0	63	58	2	0	38	1.13
47435613--47435662	25	2.0	25	92	0	82	64	2	0	34	1.05
47436975--47437102	20	6.7	19	75	15	97	54	7	0	38	1.28
47437019--47437086	35	1.9	35	82	5	84	54	5	0	39	1.25
47437068--47437106	20	2.0	19	85	14	53	64	5	0	30	1.15
47438507--47438536	2	15.0	2	100	0	60	50	0	0	50	1.00
47442232--47442295	11	5.8	11	73	14	53	73	4	1	20	1.09
47442318--47442364	15	3.1	15	81	6	51	74	8	2	14	1.15
47447791--47447837	23	2.1	22	88	11	69	70	2	0	27	0.99
47447817--47447867	18	2.9	18	82	2	59	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47449131--47449173	21	2.0	21	86	8	61	4	30	0	65	1.13
47450036--47450503	234	2.0	234	96	0	866	30	12	13	42	1.82
47450672--47450696	10	2.5	10	100	0	50	36	0	0	64	0.94
47450830--47450866	17	2.2	17	90	4	58	70	0	0	29	0.88
47459823--47460081	29	8.8	29	66	22	80	38	2	25	33	1.69
47459922--47460194	59	4.7	58	77	12	265	38	1	24	35	1.64
47459922--47460204	29	9.6	28	69	19	141	38	1	25	35	1.65
47459922--47460204	30	9.6	30	71	13	187	38	1	25	35	1.65
47462013--47462099	6	15.0	6	74	11	74	54	2	1	42	1.20
47462015--47462109	29	3.3	27	72	13	75	55	3	1	40	1.23
47462044--47462099	23	2.4	23	88	5	78	55	3	1	39	1.28
47462013--47462125	17	6.2	17	77	11	100	53	4	0	40	1.27
47465582--47466330	381	2.0	376	85	3	1031	29	21	18	30	1.97
47473549--47473595	23	2.0	25	87	8	71	53	6	4	36	1.46
47474022--47474130	56	1.9	56	81	3	130	25	29	22	22	1.99
47474150--47474199	26	1.9	26	87	0	73	38	24	20	18	1.93
47478598--47478640	21	2.0	22	86	4	61	30	4	23	41	1.74
47483956--47484021	29	2.3	29	91	0	105	27	16	18	37	1.92
47485817--47485959	43	3.4	42	77	11	148	29	25	18	26	1.98
47487095--47487230	36	3.8	36	92	0	209	24	26	16	32	1.96
47489526--47489949	41	10.3	41	73	6	295	20	26	22	30	1.98
47491191--47491371	41	4.4	41	90	0	263	24	25	11	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47493710--47493881	41	4.2	41	91	0	254	25	25	9	39	1.86
47493710--47493926	82	2.6	82	84	2	274	25	25	10	38	1.87
47504686--47504710	2	12.5	2	100	0	50	48	0	0	52	1.00
47510524--47510580	23	2.5	23	88	0	87	19	21	29	29	1.97
47516604--47516660	23	2.5	23	91	0	87	22	21	26	29	1.99
47521444--47521486	20	2.1	20	83	12	52	55	6	0	37	1.27
47523166--47523237	31	2.3	31	78	4	83	45	15	9	29	1.78
47534323--47534347	12	2.1	12	100	0	50	32	0	8	60	1.26
47535320--47535358	17	2.3	17	86	8	53	46	23	12	17	1.83
47544182--47544243	28	2.2	29	82	8	74	67	3	6	22	1.28
47546470--47546656	52	3.6	52	81	4	189	34	22	15	27	1.95
47548376--47548934	47	11.9	47	80	3	437	26	15	21	35	1.94
47548919--47549105	42	4.5	41	77	4	176	27	12	28	31	1.93
47548919--47549104	84	2.2	85	78	4	198	27	12	28	31	1.93
47550267--47550291	9	2.8	9	100	0	50	0	20	0	80	0.72
47550809--47550841	15	2.2	15	94	0	57	0	15	0	84	0.61
47556602--47556843	27	8.8	27	76	9	170	54	5	16	23	1.63
47556574--47556820	56	4.4	56	81	10	238	53	6	17	23	1.66
47556642--47556757	28	4.2	27	74	9	92	56	7	13	21	1.62
47563022--47563078	24	2.4	24	93	0	96	24	12	10	52	1.70
47564982--47565032	24	2.1	24	88	0	75	25	11	7	54	1.63
47565739--47565795	28	2.0	28	96	0	105	31	12	5	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47566810--47566856	20	2.3	20	81	0	58	12	25	31	29	1.93
47566971--47567009	19	2.1	19	100	0	78	38	10	15	35	1.81
47579948--47580496	209	2.6	208	88	3	777	23	22	19	34	1.96
47580575--47580670	39	2.5	39	79	3	113	27	21	32	18	1.97
47581045--47581476	50	8.7	49	74	10	164	17	31	15	35	1.91
47581235--47581476	99	2.4	99	78	3	254	16	30	16	35	1.92
47582423--47582496	11	6.5	11	77	11	60	5	10	4	79	1.02
47582418--47582495	34	2.3	34	82	4	86	5	11	3	79	1.02
47582445--47582500	23	2.5	23	88	5	80	8	10	0	80	0.91
47587484--47587605	29	4.3	29	80	8	126	30	5	29	34	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171