genome.fa.s3.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  138  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42621974--42622037	9	6.9	9	77	16	51	59	3	1	35	1.23
42621986--42622045	28	2.2	27	85	8	77	63	3	3	30	1.27
42629541--42629580	3	13.7	3	94	5	73	0	30	0	70	0.88
42639576--42639865	51	5.7	49	87	4	269	28	25	12	33	1.93
42639626--42639865	102	2.4	102	90	1	365	28	25	12	33	1.93
42645004--42645045	16	2.6	16	96	0	75	28	30	9	30	1.89
42646699--42646933	51	4.6	49	86	7	206	29	25	11	32	1.92
42646749--42646937	51	3.7	51	89	2	272	29	26	11	31	1.92
42656684--42656730	13	3.4	14	82	14	53	61	0	0	38	0.96
42657920--42657966	13	3.4	14	82	14	53	61	0	0	38	0.96
42660391--42660875	163	3.0	162	82	4	611	28	10	10	50	1.70
42660595--42661162	288	2.0	288	83	4	727	28	11	10	50	1.70
42660885--42661655	165	4.7	164	79	4	707	29	12	9	47	1.74
42661877--42662830	164	5.7	164	76	10	651	30	12	8	48	1.71
42661877--42662483	328	1.8	329	82	4	785	28	13	9	47	1.74
42662167--42662823	340	1.9	340	81	5	781	31	11	8	48	1.69
42661877--42662821	504	1.9	491	79	10	1058	30	12	8	48	1.71
42663926--42663960	2	17.5	2	100	0	70	51	0	0	48	1.00
42665922--42666151	113	2.0	113	96	0	424	30	20	7	42	1.79
42666448--42666490	22	2.0	21	82	13	52	44	23	6	25	1.78
42666818--42666879	29	2.1	30	81	3	72	66	0	4	29	1.12
42672300--42672347	24	2.0	24	100	0	96	29	16	8	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42673201--42673253	26	2.0	26	85	3	70	58	1	3	35	1.27
42676229--42676401	91	1.9	91	92	2	294	29	9	26	35	1.87
42688585--42688946	138	2.6	139	84	2	478	30	14	8	46	1.73
42689292--42689846	167	3.3	164	84	4	607	29	11	10	47	1.74
42689490--42690991	387	3.9	386	89	0	2186	29	11	10	47	1.74
42689512--42690991	773	1.9	770	88	2	2225	29	11	10	47	1.74
42690233--42690619	167	2.3	165	79	6	408	31	11	9	48	1.71
42690620--42691020	165	2.4	166	80	1	466	29	10	10	48	1.72
42692138--42692185	24	2.0	24	100	0	96	29	0	25	45	1.53
42695830--42696301	49	9.7	48	65	17	134	16	25	18	38	1.92
42695816--42696292	97	4.9	96	86	1	580	17	25	19	38	1.93
42702198--42702250	26	2.0	26	100	0	106	37	15	15	32	1.88
42713178--42713232	23	2.3	24	84	6	67	67	12	9	10	1.43
42721377--42721497	28	4.4	28	82	3	129	28	28	20	22	1.99
42721373--42721497	15	9.0	15	71	15	90	28	27	21	23	1.99
42721373--42721497	55	2.3	56	80	2	137	28	27	21	23	1.99
42729903--42729959	23	2.5	23	81	13	73	43	24	0	31	1.54
42733928--42733970	21	2.0	21	86	0	59	11	16	4	67	1.38
42733938--42733993	26	2.1	28	80	12	64	8	12	3	75	1.17
42736599--42736638	16	2.4	17	91	4	64	70	5	2	22	1.19
42740050--42740074	13	1.9	13	100	0	50	8	0	4	88	0.64
42755437--42755717	59	4.8	57	75	14	209	41	4	22	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42755405--42755717	59	5.3	58	73	15	200	41	4	22	31	1.75
42755377--42755583	29	7.1	29	71	15	133	37	4	25	32	1.77
42757503--42757595	17	5.4	17	82	6	116	53	3	1	41	1.24
42757503--42757595	6	16.2	6	68	20	56	53	3	1	41	1.24
42757522--42757584	11	5.4	12	74	11	51	53	4	1	39	1.31
42757523--42757577	11	4.8	11	78	14	58	56	3	1	38	1.28
42758002--42758154	39	3.9	39	73	8	141	22	18	31	27	1.97
42758631--42758732	48	2.1	47	81	1	114	12	29	21	36	1.91
42758668--42758898	98	2.4	98	85	0	320	11	24	22	41	1.87
42758668--42758895	49	4.7	49	77	6	205	11	24	23	40	1.88
42758668--42758966	98	3.1	94	81	8	298	12	24	23	40	1.89
42758877--42759032	48	3.2	48	72	9	129	16	24	21	37	1.93
42758851--42759094	98	2.5	98	81	4	280	13	25	22	38	1.91
42758527--42759060	49	11.0	48	71	11	202	14	25	20	39	1.91
42760320--42760397	22	3.7	21	79	6	86	1	17	0	80	0.77
42760325--42760397	7	10.3	7	80	12	78	1	15	0	83	0.71
42760325--42760397	29	2.6	29	84	6	96	1	15	0	83	0.71
42765878--42766204	29	11.0	29	73	13	222	39	3	26	30	1.73
42765857--42766201	59	5.8	59	80	12	320	39	4	26	30	1.75
42765850--42765958	29	3.7	29	75	9	96	32	7	28	32	1.84
42765857--42766234	30	12.7	31	73	16	252	38	4	26	31	1.75
42765878--42766234	118	3.0	118	82	11	401	38	3	26	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42767997--42768035	7	5.4	7	84	6	51	15	0	10	74	1.07
42767997--42768037	15	2.9	14	85	7	55	14	0	12	73	1.11
42770762--42770904	68	2.1	68	92	2	236	19	17	9	53	1.71
42770900--42770942	21	2.0	21	86	0	59	11	16	4	67	1.38
42770910--42770965	26	2.1	28	80	12	64	8	12	3	75	1.17
42773531--42773572	16	2.5	17	88	7	59	69	4	2	23	1.20
42775061--42775092	3	10.7	3	100	0	64	68	0	0	31	0.90
42776838--42776862	13	1.9	13	100	0	50	8	0	4	88	0.64
42792208--42792495	58	4.9	58	77	8	239	40	4	25	29	1.75
42792245--42792495	29	8.6	30	67	16	91	41	4	25	29	1.74
42793523--42793588	3	22.0	3	81	6	71	31	6	0	62	1.20
42794329--42794422	17	5.4	18	77	8	88	52	4	1	42	1.28
42794329--42794422	35	2.7	34	79	9	100	52	4	1	42	1.28
42794817--42795071	137	1.9	138	84	4	345	24	18	32	25	1.97
42795348--42795927	48	11.9	48	77	7	445	13	25	22	38	1.90
42795433--42795927	98	5.1	98	81	5	443	11	25	23	39	1.89
42795452--42795731	146	1.9	147	86	3	404	11	24	25	39	1.88
42795452--42795828	146	2.6	144	81	6	368	11	24	24	39	1.89
42802710--42803030	117	2.7	117	82	8	361	39	4	25	30	1.76
42802710--42803030	59	5.5	56	80	8	286	39	4	25	30	1.76
42802710--42803017	29	10.5	28	69	17	139	38	4	26	29	1.77
42802881--42803033	30	5.2	30	72	9	134	43	5	21	29	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42804080--42804106	3	9.0	3	100	0	54	66	0	0	33	0.92
42804105--42804131	3	9.0	3	100	0	54	33	0	0	66	0.92
42804590--42804650	25	2.4	25	83	5	79	24	13	40	21	1.88
42804900--42805010	17	6.4	17	81	7	134	54	3	0	41	1.24
42804900--42805010	35	3.2	33	82	10	125	54	3	0	41	1.24
42804900--42804978	6	13.7	6	71	17	60	51	2	1	44	1.23
42804932--42804978	23	2.0	23	88	8	69	53	4	0	42	1.20
42804900--42805010	52	2.1	52	88	0	159	54	3	0	41	1.24
42804920--42804975	11	4.9	11	79	14	60	57	3	1	37	1.27
42811398--42811466	29	2.3	30	85	5	86	50	15	13	20	1.77
42814531--42814581	22	2.2	24	83	13	63	60	3	0	35	1.15
42815259--42815349	41	2.2	40	84	1	119	52	6	1	39	1.35
42819491--42819558	35	1.9	35	82	5	84	47	10	10	32	1.71
42820018--42820210	97	2.0	97	84	4	255	37	15	17	29	1.91
42820498--42820944	29	15.2	30	72	17	287	35	5	25	33	1.78
42820449--42820923	59	8.1	59	82	6	402	34	5	25	33	1.80
42820494--42820943	30	15.3	31	71	20	238	35	5	26	33	1.79
42822080--42822117	16	2.4	16	82	4	51	36	0	2	60	1.11
42822805--42822855	13	3.9	14	72	12	54	21	7	25	45	1.79
42822873--42822952	17	4.6	17	76	1	70	51	5	2	41	1.37
42824832--42824945	39	2.9	39	86	0	147	42	17	14	25	1.88
42824869--42825019	39	3.9	38	77	3	104	37	18	17	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42827381--42827550	23	7.3	23	76	12	134	45	20	20	12	1.84
42827381--42827520	69	2.0	67	83	8	174	45	20	20	13	1.84
42836811--42837606	101	7.9	99	78	5	633	27	19	17	35	1.94
42836757--42837203	50	8.9	50	66	11	164	25	19	19	35	1.95
42837216--42837585	201	1.8	201	81	2	465	30	19	16	33	1.94
42836810--42837576	50	15.3	50	65	13	272	27	19	17	35	1.94
42845572--42845656	25	3.3	26	77	12	77	68	7	1	23	1.21
42845830--42845864	3	11.7	3	88	11	54	71	0	0	28	0.86
42846316--42846399	42	2.0	42	90	0	132	29	13	27	29	1.94
42848303--42848339	18	2.1	18	89	0	56	48	0	24	27	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171