genome.fa.s3.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  101  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32614879--32615207	117	2.8	114	77	9	315	34	4	24	35	1.76
32614938--32615194	29	8.7	29	71	14	172	35	5	25	34	1.78
32617054--32617146	17	5.4	16	81	11	87	52	3	2	41	1.29
32617054--32617131	6	13.5	6	70	12	56	50	2	2	44	1.29
32617085--32617131	23	2.0	23	88	8	69	53	4	0	42	1.20
32617796--32617840	19	2.4	19	81	7	56	37	0	4	57	1.19
32629173--32629241	36	1.9	36	84	0	93	34	7	26	31	1.84
32638730--32638780	25	2.1	25	96	3	95	35	7	15	41	1.76
32640056--32640167	38	3.0	38	87	3	149	29	19	24	26	1.98
32645141--32645183	22	2.0	22	85	0	59	53	6	0	39	1.28
32645866--32645908	12	3.5	12	90	3	59	18	74	0	6	1.04
32645874--32645908	6	5.8	6	89	0	52	17	77	0	5	0.96
32650479--32650534	15	3.5	15	75	13	58	50	0	1	48	1.11
32653616--32653659	23	1.9	23	85	0	61	38	2	4	54	1.33
32654576--32654620	17	2.6	17	83	13	56	40	0	6	53	1.27
32656922--32656962	18	2.3	18	87	4	57	56	12	7	24	1.61
32661339--32661619	36	7.8	36	86	0	364	24	16	23	34	1.95
32661360--32661649	108	2.7	108	85	3	361	24	15	24	35	1.94
32663310--32663372	16	3.9	16	81	8	74	34	4	30	30	1.78
32663550--32663673	59	2.1	58	83	8	153	50	4	1	43	1.30
32687506--32689213	873	2.0	873	88	0	2583	29	21	20	27	1.98
32690212--32690249	17	2.2	17	86	9	51	15	13	15	55	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32695500--32695552	20	2.7	21	80	11	60	66	0	0	33	0.92
32696913--32696967	27	2.0	27	89	0	83	27	9	34	29	1.87
32697329--32697369	22	1.9	22	90	5	66	63	17	9	9	1.51
32697869--32697893	11	2.3	11	100	0	50	76	0	0	24	0.80
32697864--32697966	45	2.3	45	77	15	115	63	0	0	34	1.08
32697958--32698038	39	2.1	37	84	8	101	58	2	6	33	1.36
32698014--32698049	18	2.0	18	89	10	56	66	5	5	22	1.34
32698225--32698394	21	8.7	20	69	20	85	30	5	2	61	1.32
32698286--32698377	10	9.4	10	72	14	59	31	3	1	64	1.17
32698249--32698370	57	2.1	58	89	4	185	30	5	2	61	1.32
32699071--32699118	23	2.0	23	84	4	60	33	2	18	45	1.61
32704220--32704245	3	8.7	3	100	0	52	30	0	0	69	0.89
32704492--32704688	89	2.2	88	83	5	254	39	21	8	30	1.82
32704704--32704766	15	3.8	17	74	13	51	63	1	3	31	1.19
32704740--32704971	106	2.1	108	87	9	346	58	3	1	36	1.27
32704770--32704984	105	2.0	108	89	6	330	56	5	2	34	1.37
32705390--32705461	10	7.5	10	70	9	51	30	5	1	62	1.26
32705390--32705460	19	3.7	19	77	11	65	30	5	1	61	1.27
32705353--32705460	56	1.9	57	86	5	157	32	5	0	61	1.26
32708057--32708139	9	9.6	9	72	16	59	68	2	1	27	1.09
32708118--32708160	18	2.3	18	84	8	50	74	9	2	13	1.16
32708263--32708311	18	2.8	19	85	11	61	71	0	2	26	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32708330--32708395	19	3.6	18	78	17	64	28	9	3	59	1.43
32708718--32708926	89	2.4	88	79	9	232	37	9	17	35	1.82
32714767--32714850	9	9.1	9	71	23	68	52	1	0	46	1.08
32714765--32714850	19	4.6	21	73	20	68	51	1	0	47	1.08
32714768--32714852	26	3.1	27	89	6	136	54	1	0	44	1.07
32715303--32715375	15	4.6	15	71	24	51	2	10	15	71	1.25
32715300--32715372	23	3.0	23	81	11	83	2	9	16	71	1.24
32715300--32715365	26	2.7	24	88	6	89	3	9	16	71	1.25
32715623--32715693	16	4.6	16	69	11	58	46	1	0	52	1.09
32715653--32715696	16	2.8	16	89	6	63	50	0	0	50	1.00
32719602--32719652	24	2.1	24	82	7	59	50	7	3	37	1.50
32720878--32721104	26	8.7	26	80	6	237	38	15	22	23	1.92
32720878--32721089	78	2.7	78	84	5	286	39	15	21	23	1.91
32723331--32723360	12	2.5	12	94	0	51	43	13	33	10	1.77
32728150--32728221	24	3.0	24	71	18	67	37	9	1	51	1.44
32737377--32737577	26	7.7	26	79	2	190	36	16	22	24	1.94
32737377--32737549	78	2.2	78	84	0	211	36	16	21	25	1.94
32739718--32739748	2	15.5	2	100	0	62	51	0	0	48	1.00
32740942--32741018	6	13.2	6	73	10	70	41	2	1	54	1.22
32740944--32741006	23	2.8	22	85	7	81	41	3	1	53	1.26
32754227--32754395	50	3.4	50	84	0	230	32	18	33	14	1.92
32754176--32754394	100	2.2	99	83	3	269	32	17	33	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32754739--32754834	39	2.5	40	77	8	108	20	28	19	31	1.97
32754913--32756230	208	6.3	208	86	0	1631	37	18	21	22	1.94
32756627--32756715	6	15.3	6	69	11	60	39	2	2	56	1.24
32756642--32756715	17	4.3	17	85	1	103	39	2	2	55	1.28
32759965--32760003	17	2.3	17	90	0	60	46	35	12	5	1.65
32761682--32761754	16	4.6	16	66	19	53	26	41	0	32	1.56
32761682--32761760	27	3.1	27	65	26	73	25	40	0	34	1.56
32761683--32761786	48	2.2	48	94	0	190	26	41	0	31	1.56
32767063--32767284	29	7.6	29	69	22	142	35	2	29	32	1.72
32767102--32767255	30	5.2	30	69	22	128	33	1	29	35	1.66
32767064--32767295	59	4.0	59	93	1	371	34	2	30	32	1.71
32767919--32767976	28	2.1	28	93	0	98	17	48	18	15	1.82
32768405--32768438	10	3.4	10	87	0	50	41	0	0	58	0.98
32769207--32769270	6	11.3	6	72	12	55	56	3	0	40	1.15
32769207--32769270	17	3.9	16	79	6	65	56	3	0	40	1.15
32769207--32769251	16	2.7	17	86	6	65	57	2	0	40	1.11
32769198--32769257	27	2.2	27	84	0	75	53	1	1	43	1.20
32769210--32769264	27	2.0	27	89	0	83	56	3	0	40	1.17
32769895--32769933	14	2.7	15	88	7	55	48	12	0	38	1.42
32770656--32770689	16	2.1	16	88	0	50	50	5	0	44	1.26
32773671--32774288	309	2.0	308	91	2	1001	33	14	22	29	1.93
32774405--32774639	120	2.0	120	94	0	416	28	16	28	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32775237--32775293	21	2.7	21	78	5	62	31	7	22	38	1.81
32778212--32778453	30	8.1	29	81	5	207	35	23	2	37	1.70
32778210--32778454	60	4.1	60	77	4	237	35	24	2	36	1.70
32778209--32778453	90	2.7	91	80	5	275	36	24	2	36	1.70
32783830--32784405	39	14.8	37	67	13	241	25	30	19	24	1.98
32783816--32784468	78	8.4	78	84	1	770	24	30	19	24	1.98
32784660--32784934	124	2.2	124	94	0	469	35	18	23	22	1.96
32786570--32786924	30	12.0	29	82	5	363	35	24	1	38	1.66
32786570--32786924	89	4.0	87	84	6	401	35	24	1	38	1.66
32795298--32795355	24	2.4	25	85	11	84	74	0	0	25	0.82
32795314--32795343	14	2.1	15	93	6	53	76	0	0	23	0.78
32795378--32795441	26	2.6	23	83	11	74	68	3	0	28	1.04
32795378--32795443	15	4.1	16	79	13	73	68	3	0	28	1.05
32795447--32795496	21	2.4	22	83	12	70	58	6	0	36	1.23
32795464--32795560	29	3.3	29	72	4	88	58	6	3	31	1.38
32796013--32796067	27	2.0	27	82	6	67	32	0	3	63	1.12
32796040--32796090	20	2.7	20	81	6	61	35	0	3	60	1.15
32796121--32796155	17	2.1	17	89	10	54	25	0	2	71	1.00
32812535--32812563	12	2.4	12	100	0	58	65	0	34	0	0.93
32812982--32813022	17	2.4	18	80	19	52	14	17	17	51	1.77
32813509--32816123	588	4.5	588	81	5	2740	37	12	16	33	1.87
32816653--32816682	14	2.2	14	94	5	53	36	10	23	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32818203--32818233	16	1.9	16	93	0	53	0	22	0	77	0.77
32827169--32827198	14	2.2	14	94	5	53	36	10	23	30	1.87
32829066--32829134	34	2.0	34	97	0	129	30	8	13	47	1.72
32833262--32833370	46	2.3	46	80	1	128	42	28	13	15	1.85
32833284--32833372	23	3.9	23	71	0	79	42	26	12	17	1.85
32856621--32856651	3	10.3	3	92	0	53	70	0	0	29	0.87
32856831--32856864	16	2.1	16	88	5	50	55	8	0	35	1.31
32858649--32858708	21	2.9	21	80	2	68	38	20	5	36	1.74
32861637--32861680	21	2.1	21	91	0	70	27	20	22	29	1.99
32861464--32861795	175	1.9	174	82	3	416	28	17	18	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171