genome.fa.s3.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  115  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36653463--36653664	39	5.2	39	75	2	172	26	17	18	37	1.93
36653465--36653664	78	2.6	78	75	1	204	26	17	18	37	1.93
36656479--36656570	38	2.2	44	76	20	99	35	4	2	57	1.31
36656571--36656639	32	2.1	32	81	7	77	42	5	2	49	1.41
36656659--36656684	11	2.4	11	100	0	52	23	7	0	69	1.14
36660416--36660449	17	2.0	17	100	0	68	29	11	23	35	1.90
36662638--36662691	24	2.2	24	86	0	72	50	3	20	25	1.65
36668164--36668228	30	2.2	30	80	0	76	36	4	0	58	1.19
36669194--36669250	30	1.9	30	89	7	89	40	8	7	43	1.63
36671165--36671276	54	2.1	54	96	0	206	37	21	3	37	1.71
36672288--36672374	36	2.4	36	74	0	84	33	8	24	34	1.85
36673616--36673701	28	3.2	27	78	4	84	23	19	4	52	1.65
36673619--36673713	27	3.5	26	74	8	91	24	16	5	53	1.63
36673626--36673747	55	2.2	54	82	5	138	25	18	4	51	1.65
36676404--36676526	28	4.5	27	76	12	90	24	20	3	52	1.61
36677785--36677824	20	2.0	20	95	0	71	32	35	2	30	1.71
36678356--36678512	10	15.0	10	69	22	67	38	2	19	38	1.66
36678368--36678512	59	2.5	59	94	1	247	38	2	20	38	1.67
36678474--36678507	9	3.7	9	84	7	50	38	2	17	41	1.65
36678428--36678487	26	2.4	26	78	15	74	40	3	20	36	1.69
36678361--36678550	58	3.3	58	86	4	249	37	3	20	38	1.69
36687312--36687370	29	2.0	29	83	0	73	44	6	0	49	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36690376--36690409	18	1.9	18	88	5	52	32	2	0	64	1.08
36690391--36690433	21	2.0	21	91	8	70	30	0	2	67	1.03
36690517--36690553	18	2.1	18	100	0	74	72	5	0	21	1.04
36694279--36694478	109	1.8	109	93	0	346	40	16	14	29	1.88
36694827--36694865	6	6.5	6	96	0	60	79	0	5	15	0.90
36696399--36696468	5	14.2	5	75	8	54	5	1	18	74	1.09
36696880--36697535	45	15.1	45	82	5	596	23	15	26	34	1.95
36696909--36697536	91	7.2	91	83	6	602	24	15	26	33	1.95
36696880--36697535	136	5.0	136	81	8	640	23	15	26	34	1.95
36699300--36699346	17	2.8	17	81	12	60	2	17	2	78	0.94
36701750--36701797	21	2.2	21	88	7	69	77	0	12	10	1.00
36716263--36716287	13	1.9	13	100	0	50	24	16	12	48	1.79
36724038--36724076	18	2.1	19	85	4	53	38	10	2	48	1.51
36724823--36724924	26	3.8	27	83	10	129	24	17	4	52	1.64
36726912--36726992	36	2.2	36	82	0	108	30	9	23	35	1.87
36732095--36732160	34	1.9	34	84	6	89	19	21	13	45	1.85
36732114--36732160	17	2.8	17	76	0	58	17	21	14	46	1.83
36734979--36735024	19	2.3	21	88	7	69	36	6	19	36	1.78
36734930--36735069	24	6.1	24	68	23	79	36	5	19	39	1.73
36734928--36735083	65	2.3	66	88	7	226	37	4	18	39	1.71
36734967--36735054	20	4.1	21	69	21	74	37	6	17	38	1.76
36736810--36737167	123	2.9	123	92	1	576	42	8	11	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36743874--36744361	122	4.0	122	92	2	782	42	8	11	38	1.71
36744220--36744266	22	2.2	22	85	11	62	53	4	12	29	1.58
36747511--36747549	19	2.1	19	90	4	62	28	7	10	53	1.62
36751486--36751548	31	2.0	31	96	0	117	34	15	11	38	1.83
36754913--36755042	28	4.8	27	76	10	104	22	16	6	55	1.63
36754920--36755042	55	2.2	55	83	8	153	22	17	5	54	1.63
36757691--36757774	28	3.1	27	81	5	107	20	19	5	54	1.64
36757724--36757791	28	2.4	28	75	7	66	19	20	5	54	1.64
36757696--36757819	57	2.2	54	83	9	144	21	20	5	52	1.67
36759159--36759245	36	2.4	36	82	3	122	33	9	24	33	1.87
36759620--36759736	35	3.4	35	68	19	93	41	4	20	34	1.72
36759679--36759717	10	3.8	10	82	3	51	41	2	20	35	1.66
36759612--36759759	68	2.2	68	89	3	219	40	4	20	35	1.71
36776336--36776360	2	12.5	2	100	0	50	48	0	0	52	1.00
36777715--36777786	28	2.6	27	84	6	90	22	15	9	52	1.71
36779756--36779823	31	2.3	29	82	10	75	22	14	2	60	1.48
36779771--36779831	29	2.0	30	87	6	88	21	18	3	57	1.54
36785746--36786358	49	12.6	48	80	7	519	33	16	32	17	1.92
36785746--36786357	99	6.3	98	80	7	563	33	16	33	17	1.92
36786146--36786378	50	4.7	50	78	8	201	33	16	31	17	1.93
36786177--36786434	99	2.6	99	81	7	240	37	15	28	18	1.92
36786692--36787275	123	4.8	123	86	2	708	35	15	25	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36786704--36787227	245	2.1	245	86	2	735	34	16	25	23	1.95
36787205--36787321	47	2.5	46	88	4	171	36	14	25	23	1.93
36789057--36789165	29	3.7	29	81	10	96	24	11	4	58	1.52
36789084--36789162	31	2.6	30	83	15	92	18	16	3	60	1.50
36791494--36791523	14	2.2	14	94	5	53	36	10	23	30	1.87
36796995--36797067	33	2.3	31	77	15	78	45	6	0	47	1.29
36797051--36797083	9	3.6	9	95	4	57	42	0	0	57	0.98
36799431--36799722	147	2.0	147	95	1	523	28	23	19	27	1.98
36799823--36799985	27	6.0	27	75	7	141	20	19	4	55	1.61
36802053--36802191	36	3.9	36	86	6	183	20	28	13	37	1.91
36808757--36809004	116	2.1	116	89	1	372	37	25	10	26	1.88
36809496--36809596	35	2.8	36	81	4	114	24	25	11	37	1.90
36815258--36815385	56	2.3	55	83	5	159	26	29	21	21	1.99
36817942--36818073	52	2.5	52	90	0	210	28	15	23	32	1.95
36825236--36825302	29	2.3	29	87	5	82	34	7	1	56	1.36
36825299--36825362	30	2.1	31	82	8	78	60	1	3	34	1.22
36825419--36825488	21	3.5	20	66	23	56	44	1	4	50	1.30
36825420--36825482	19	3.2	19	70	14	56	46	1	4	47	1.33
36826019--36826061	19	2.3	19	87	0	59	37	6	2	53	1.41
36826166--36826203	18	2.1	18	95	0	67	28	5	0	65	1.14
36826181--36826227	22	2.4	19	82	13	51	27	2	0	70	0.99
36829959--36829996	19	2.0	19	89	0	58	44	13	7	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36838835--36838914	39	2.1	39	88	9	119	42	26	12	18	1.86
36846186--36846235	6	8.3	6	82	12	50	82	0	14	4	0.82
36850455--36850493	21	1.9	21	89	5	62	12	12	7	66	1.43
36856256--36856280	13	1.9	13	100	0	50	24	16	12	48	1.79
36859113--36859147	18	1.9	18	88	0	52	37	25	20	17	1.94
36859176--36859212	18	2.1	18	100	0	74	32	29	21	16	1.95
36866046--36866095	20	2.5	20	80	6	57	36	14	12	38	1.83
36869518--36869570	23	2.3	23	90	0	79	62	0	30	7	1.23
36872805--36872895	16	6.1	16	71	18	61	24	16	8	50	1.73
36872818--36872853	17	2.1	17	89	0	54	25	16	8	50	1.73
36873382--36873444	31	2.1	29	85	8	83	57	17	4	20	1.58
36873817--36873847	14	2.1	15	94	5	55	77	3	6	12	1.08
36876908--36876996	28	3.2	28	82	1	99	26	21	7	43	1.80
36877158--36877265	27	3.9	26	72	12	74	33	27	9	29	1.88
36877155--36877245	27	3.4	26	75	11	85	31	26	7	34	1.85
36885106--36885194	27	3.3	27	79	0	97	25	25	12	35	1.91
36888170--36888242	34	2.2	34	87	2	112	35	12	30	21	1.90
36890066--36890159	27	3.5	26	77	9	100	35	23	17	24	1.95
36890578--36890631	21	2.6	21	79	5	56	33	24	14	27	1.94
36890715--36890758	21	2.1	21	83	8	54	38	25	9	27	1.86
36900125--36900150	8	3.2	8	100	0	52	42	11	0	46	1.40
36900122--36900173	16	3.2	16	81	5	59	36	7	7	48	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36900622--36900670	23	2.2	22	85	7	64	48	6	10	34	1.62
36912619--36912662	22	2.0	22	95	0	79	43	11	9	36	1.72
36914587--36914713	64	2.0	64	95	0	227	40	13	12	33	1.82
36923084--36923126	18	2.4	18	88	7	61	48	0	0	51	1.00
36924119--36924150	7	4.7	7	96	3	57	43	28	0	28	1.55
36928226--36928416	23	8.3	23	82	1	249	30	4	16	48	1.66
36928231--36928408	91	1.9	92	85	3	243	31	3	16	48	1.64
36928500--36928596	36	2.7	36	90	0	149	25	11	23	39	1.88
36934320--36934367	21	2.3	21	100	0	96	35	27	14	22	1.93
36935961--36936087	51	2.5	52	88	3	177	33	14	23	28	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171