genome.fa.s3.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032247.1 Gossypioides kirkii chromosome KI_05
Parameters: 2 7 7 80 10 50 1000
Length:  50980411

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   

This is table  150  of  171  ( 20472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45209406--45209605	86	2.3	88	79	6	219	38	26	2	33	1.70
45209525--45209620	29	3.3	29	75	13	88	35	30	3	31	1.73
45216153--45216210	13	4.4	14	80	8	59	36	25	20	17	1.94
45216165--45216203	7	5.7	7	90	6	62	30	25	25	17	1.97
45216153--45216210	20	2.9	20	89	0	89	36	25	20	17	1.94
45223179--45223811	201	3.1	200	85	5	851	34	17	24	23	1.96
45224161--45224201	17	2.4	17	87	0	55	43	0	4	51	1.23
45224342--45224399	28	2.1	28	83	6	73	39	32	3	24	1.72
45224991--45225051	30	2.0	31	84	9	81	34	24	6	34	1.81
45225033--45225203	59	2.9	59	81	9	183	37	24	2	35	1.71
45224991--45225273	29	9.6	29	72	15	140	36	24	3	36	1.73
45225109--45225308	59	3.4	59	80	10	223	35	24	3	37	1.72
45225373--45225437	28	2.3	29	83	5	87	38	32	6	23	1.79
45230417--45230450	17	2.1	17	88	5	52	67	2	0	29	1.05
45230484--45230535	11	4.8	10	75	13	50	42	0	1	55	1.10
45230484--45230535	17	3.1	17	86	2	79	42	0	1	55	1.10
45231272--45231334	3	20.3	3	77	6	63	55	1	0	42	1.09
45231272--45231342	15	5.0	15	75	18	71	54	1	0	43	1.08
45232458--45232807	29	11.9	29	70	11	223	32	24	1	40	1.64
45232470--45232962	59	8.4	59	83	7	421	32	25	2	39	1.69
45232529--45232919	29	13.3	29	67	18	131	33	25	1	39	1.67
45232698--45232963	29	9.0	29	66	14	96	31	27	3	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45232502--45233015	59	8.7	58	81	7	303	31	25	3	39	1.72
45254039--45254091	27	2.0	28	82	14	67	54	11	16	16	1.70
45259933--45259973	18	2.2	19	87	12	59	43	2	0	53	1.13
45266456--45266481	12	2.2	12	100	0	52	57	7	15	19	1.62
45268454--45268591	23	5.9	22	80	12	118	10	25	23	39	1.87
45268454--45268567	46	2.5	45	79	12	142	10	24	24	40	1.87
45283203--45283323	61	2.0	61	88	3	181	31	7	15	45	1.74
45289930--45290018	43	2.1	43	86	0	124	25	8	19	46	1.79
45290518--45290574	21	2.7	20	89	5	78	36	21	22	19	1.95
45295903--45295975	13	6.0	12	75	13	60	53	1	0	45	1.09
45300559--45300595	14	2.6	14	86	0	56	64	2	0	32	1.07
45302578--45302977	43	9.3	42	83	4	437	31	28	17	23	1.97
45302590--45302978	129	3.0	129	84	3	491	31	28	16	23	1.96
45305216--45305274	17	3.4	17	69	17	57	32	0	6	61	1.22
45305341--45305420	41	2.0	41	82	2	99	27	21	20	31	1.98
45311563--45311609	24	2.0	24	91	0	76	27	12	4	55	1.56
45311571--45311625	24	2.3	24	83	0	65	29	14	7	49	1.70
45313931--45314016	44	2.0	44	97	0	163	37	18	23	20	1.94
45314130--45314236	26	3.8	26	80	8	88	41	19	27	12	1.87
45314138--45314246	29	3.8	29	80	5	116	39	19	26	14	1.90
45314283--45314369	44	2.0	44	81	4	104	34	19	29	16	1.93
45317048--45317080	16	2.1	16	94	0	57	24	18	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45317085--45317183	44	2.2	44	89	3	146	30	21	34	14	1.93
45318469--45318553	37	2.3	37	93	0	143	38	16	16	28	1.90
45319813--45319852	20	2.0	20	85	9	55	65	0	2	32	1.06
45322440--45322530	45	2.0	45	100	0	182	26	19	18	35	1.95
45323353--45323395	22	2.0	22	86	9	61	34	0	11	53	1.37
45323356--45323416	28	2.2	27	77	8	68	39	0	4	55	1.21
45323378--45323453	6	12.8	6	72	13	59	39	3	1	55	1.27
45323378--45323452	17	4.6	17	81	9	93	38	4	1	56	1.27
45324174--45324204	16	1.9	16	93	0	53	29	3	0	67	1.06
45325044--45325542	162	3.1	162	91	1	788	27	16	11	44	1.82
45325617--45325894	29	9.6	27	67	24	124	33	29	2	33	1.73
45325617--45325911	59	5.0	59	91	2	452	32	30	3	33	1.75
45325875--45325949	38	2.0	38	81	0	87	33	26	6	33	1.83
45325915--45326006	28	3.2	28	71	10	80	33	32	5	28	1.80
45329258--45329282	7	3.6	7	100	0	50	16	72	0	12	1.13
45330795--45330847	26	2.0	28	88	7	83	50	11	16	20	1.76
45334132--45334606	237	2.0	237	99	0	932	35	20	14	30	1.92
45348169--45348200	16	1.9	17	93	6	57	59	0	3	37	1.13
45357047--45357086	17	2.4	18	80	16	50	72	17	0	10	1.11
45358399--45358453	23	2.4	23	87	0	92	30	23	20	25	1.98
45360340--45360381	19	2.2	20	91	4	68	23	7	23	45	1.78
45364782--45364836	28	2.0	28	82	7	67	56	9	3	30	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45368999--45369051	20	2.7	20	85	8	65	60	0	0	39	0.97
45382000--45382090	17	5.4	16	77	16	78	41	3	2	52	1.30
45382012--45382071	6	10.5	6	74	16	56	43	3	0	53	1.17
45382000--45382090	34	2.7	33	78	13	96	41	3	2	52	1.30
45382014--45382072	11	5.3	11	77	18	59	42	3	0	54	1.17
45382030--45382088	28	2.1	28	87	6	84	44	1	1	52	1.21
45382012--45382090	23	3.5	23	78	16	85	43	2	1	53	1.22
45382842--45382883	12	3.5	12	83	0	57	59	4	7	28	1.44
45383942--45384206	29	9.0	30	69	9	125	35	23	3	37	1.71
45383932--45384078	30	4.9	29	71	6	98	38	20	4	36	1.72
45384002--45384365	58	6.2	59	80	7	313	33	26	3	36	1.72
45384030--45384197	87	1.9	87	81	12	202	34	27	1	35	1.68
45384058--45384371	117	2.7	117	83	5	352	32	28	3	35	1.73
45384061--45384307	29	8.5	29	70	18	131	33	27	2	37	1.69
45389003--45389043	18	2.3	18	87	8	57	75	0	24	0	0.80
45389003--45389043	16	2.4	18	88	8	59	75	0	24	0	0.80
45391091--45391545	50	9.1	49	68	12	203	38	21	25	14	1.92
45391082--45391547	100	4.7	100	87	2	582	38	21	25	15	1.92
45391082--45391547	201	2.3	199	85	2	623	38	21	25	15	1.92
45391658--45392182	52	11.3	49	61	25	151	32	14	18	34	1.91
45392199--45392737	52	11.5	50	63	29	167	33	15	16	34	1.90
45392620--45392774	40	3.6	40	70	23	125	32	15	16	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45392848--45393003	52	3.2	51	68	24	156	32	17	18	31	1.94
45391647--45393064	92	15.4	92	94	0	2198	32	15	17	33	1.92
45393300--45393516	118	1.9	113	87	4	317	33	23	23	20	1.97
45394010--45394168	17	9.4	17	83	8	166	40	3	3	52	1.35
45393992--45394120	34	3.8	34	80	11	140	39	3	3	52	1.38
45394010--45394168	51	3.1	52	86	7	211	40	3	3	52	1.35
45394092--45394150	28	2.1	28	84	6	75	40	3	3	52	1.35
45394913--45394955	12	3.6	12	87	0	59	53	2	11	32	1.50
45394921--45394957	15	2.5	15	90	0	56	56	0	10	32	1.34
45395494--45395524	14	2.3	14	94	5	55	61	0	38	0	0.96
45395490--45395533	24	1.9	22	90	9	70	61	0	38	0	0.96
45396021--45396126	30	3.5	30	82	0	140	35	23	3	36	1.73
45396002--45396275	59	4.6	57	76	10	185	35	26	3	34	1.73
45396071--45396272	29	6.9	27	71	15	111	35	27	1	35	1.68
45396071--45396439	58	6.3	58	78	10	303	33	27	3	35	1.73
45396284--45396376	29	3.2	29	75	17	102	31	24	4	39	1.75
45396643--45396828	95	1.9	96	80	7	218	31	18	12	37	1.88
45399740--45399855	38	3.0	38	78	3	99	29	17	10	43	1.82
45401104--45402589	433	3.4	433	99	0	2945	35	12	16	35	1.87
45408953--45408979	4	6.8	4	100	0	54	77	0	0	22	0.76
45416299--45416454	82	1.9	82	95	0	285	24	19	16	39	1.91
45432600--45432645	21	2.1	22	96	4	85	43	8	13	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45439091--45439221	60	2.1	61	83	5	158	22	17	18	41	1.90
45446176--45446306	60	2.1	61	80	5	140	23	18	17	40	1.91
45453086--45453216	60	2.1	61	83	5	158	22	17	18	41	1.90
45459853--45459880	3	9.3	3	100	0	56	67	0	32	0	0.91
45466247--45466329	41	2.0	41	86	6	114	30	0	22	46	1.52
45466276--45466406	55	2.3	58	90	7	225	29	0	22	47	1.57
45467737--45467956	59	3.8	58	83	7	259	35	5	27	31	1.78
45467865--45468076	88	2.4	88	86	3	257	36	5	25	32	1.79
45467923--45468079	30	5.3	30	78	11	162	38	4	23	33	1.75
45467913--45468076	89	1.9	88	92	1	274	39	4	24	32	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171